Clc05G24045 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc05G24045
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase-like
Location	ClcChr05: 32116137 .. 32116512 (-)
RNA-Seq Expression	Clc05G24045
Synteny	Clc05G24045

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAGGGGCGTTCAGAGATGGGCTGTTGACATTTCTGAGTGGAACCCTTCTCCCCATGACTTCTCCTCTGCCCTAACTCTACTCCCTCGCCATGAACAGTCCTCCATCCTTAGGTTACCTTCTGCAATTCAAATTTTCCTGTTTTGTGCTTGCCTCTTTTTCTTTTATGTTTGTGTTTGCTCCTTCAGAAATTCATGGTAATCGAAATTTGACTTCTGGAAACGCAAATTTTGAATGAGGAGACATGAGCGTTTTCGATATGATCACTTGTTATTTCATTTCTGTTTGTTTCTCCAGAATCTTGGTATATAAATTGATACTCTTTCTGAGATCAGCTGTGGAGTTCTTGGGTAGTTTGTTGCATAAGATTTGA

mRNA sequence

ATGGAGAGGGGCGTTCAGAGATGGGCTGTTGACATTTCTGAGTGGAACCCTTCTCCCCATGACTTCTCCTCTGCCCTAACTCTACTCCCTCGCCATGAACAGTCCTCCATCCTTAGGTTACCTTCTGCAATTCAAATTTTCCTGTTTTGTGCTTGCCTCTTTTTCTTTTATGTTTGTGTTTGCTCCTTCAGAAATTCATGAATCTTGGTATATAAATTGATACTCTTTCTGAGATCAGCTGTGGAGTTCTTGGGTAGTTTGTTGCATAAGATTTGA

Coding sequence (CDS)

ATGGAGAGGGGCGTTCAGAGATGGGCTGTTGACATTTCTGAGTGGAACCCTTCTCCCCATGACTTCTCCTCTGCCCTAACTCTACTCCCTCGCCATGAACAGTCCTCCATCCTTAGGTTACCTTCTGCAATTCAAATTTTCCTGTTTTGTGCTTGCCTCTTTTTCTTTTATGTTTGTGTTTGCTCCTTCAGAAATTCATGA

Protein sequence

MERGVQRWAVDISEWNPSPHDFSSALTLLPRHEQSSILRLPSAIQIFLFCACLFFFYVCVCSFRNS

Homology

[Close]

BLAST of Clc05G24045 vs. NCBI nr
Match: XP_038891392.1 (L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase-like [Benincasa hispida])

HSP 1 Score: 80.1 bits (196), Expect = 7.9e-12
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 0


Query: 1  MERGVQRWAVDISEWNPSPHDFSSALTLLPRHEQSSILR 40
          MERGVQRWAVDISEWNPSPH+FS ALTLLPRHE SSILR
Sbjct: 1  MERGVQRWAVDISEWNPSPHNFSFALTLLPRHEHSSILR 39

[Close]

BLAST of Clc05G24045 vs. NCBI nr
Match: XP_022968343.1 (L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase-like [Cucurbita maxima])

HSP 1 Score: 79.0 bits (193), Expect = 1.8e-11
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 0


Query: 1  MERGVQRWAVDISEWNPSPHDFSSALTLLPRHEQSSILR 40
          MERGVQRWAVDISEWNPSP +FSSALTLLPRHE SSILR
Sbjct: 1  MERGVQRWAVDISEWNPSPPEFSSALTLLPRHEHSSILR 39

[Close]

BLAST of Clc05G24045 vs. NCBI nr
Match: XP_023542347.1 (L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 79.0 bits (193), Expect = 1.8e-11
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 0


Query: 1  MERGVQRWAVDISEWNPSPHDFSSALTLLPRHEQSSILR 40
          MERGVQRWAVDISEWNPSP +FSSALTLLPRHE SSILR
Sbjct: 1  MERGVQRWAVDISEWNPSPPEFSSALTLLPRHEHSSILR 39

[Close]

BLAST of Clc05G24045 vs. NCBI nr
Match: XP_004135034.1 (L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase isoform X1 [Cucumis sativus] >KGN52190.1 hypothetical protein Csa_007934 [Cucumis sativus])

HSP 1 Score: 78.6 bits (192), Expect = 2.3e-11
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 0


Query: 1  MERGVQRWAVDISEWNPSPHDFSSALTLLPRHEQSSILR 40
          MERGVQRWAVDIS+WNPSP +FSSALTLLPRHE SSILR
Sbjct: 1  MERGVQRWAVDISQWNPSPREFSSALTLLPRHEHSSILR 39

[Close]

BLAST of Clc05G24045 vs. NCBI nr
Match: KAG6573886.1 (L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 77.0 bits (188), Expect = 6.7e-11
Identity = 35/39 (89.74%), Postives = 36/39 (92.31%), Query Frame = 0


Query: 1  MERGVQRWAVDISEWNPSPHDFSSALTLLPRHEQSSILR 40
          MERGVQRWAVDISEWNPSP +FSSAL LLPRHE SSILR
Sbjct: 1  MERGVQRWAVDISEWNPSPPEFSSALNLLPRHEHSSILR 39

[Close]

BLAST of Clc05G24045 vs. ExPASy TrEMBL
Match: A0A6J1HXR6 (L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase-like OS=Cucurbita maxima OX=3661 GN=LOC111467608 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 8.5e-12
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 0


Query: 1  MERGVQRWAVDISEWNPSPHDFSSALTLLPRHEQSSILR 40
          MERGVQRWAVDISEWNPSP +FSSALTLLPRHE SSILR
Sbjct: 1  MERGVQRWAVDISEWNPSPPEFSSALTLLPRHEHSSILR 39

[Close]

BLAST of Clc05G24045 vs. ExPASy TrEMBL
Match: A0A0A0KRD2 (ACPS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G614660 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.1e-11
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 0


Query: 1  MERGVQRWAVDISEWNPSPHDFSSALTLLPRHEQSSILR 40
          MERGVQRWAVDIS+WNPSP +FSSALTLLPRHE SSILR
Sbjct: 1  MERGVQRWAVDISQWNPSPREFSSALTLLPRHEHSSILR 39

[Close]

BLAST of Clc05G24045 vs. ExPASy TrEMBL
Match: A0A5A7STW8 (L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001980 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 7.2e-11
Identity = 34/39 (87.18%), Postives = 36/39 (92.31%), Query Frame = 0


Query: 1  MERGVQRWAVDISEWNPSPHDFSSALTLLPRHEQSSILR 40
          MERGVQRWAVDIS+WNPSP +FSS LTLLPRHE SSILR
Sbjct: 1  MERGVQRWAVDISQWNPSPLEFSSVLTLLPRHEHSSILR 39

[Close]

BLAST of Clc05G24045 vs. ExPASy TrEMBL
Match: A0A1S3BGH5 (L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase-like OS=Cucumis melo OX=3656 GN=LOC103489390 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 7.2e-11
Identity = 34/39 (87.18%), Postives = 36/39 (92.31%), Query Frame = 0


Query: 1  MERGVQRWAVDISEWNPSPHDFSSALTLLPRHEQSSILR 40
          MERGVQRWAVDIS+WNPSP +FSS LTLLPRHE SSILR
Sbjct: 1  MERGVQRWAVDISQWNPSPLEFSSVLTLLPRHEHSSILR 39

[Close]

BLAST of Clc05G24045 vs. ExPASy TrEMBL
Match: A0A6J1DBY1 (L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111018686 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 9.4e-11
Identity = 32/39 (82.05%), Postives = 37/39 (94.87%), Query Frame = 0


Query: 1  MERGVQRWAVDISEWNPSPHDFSSALTLLPRHEQSSILR 40
          MERGVQRWAVD+S+W PSPH+FSSAL LLP+HE+SSILR
Sbjct: 1  MERGVQRWAVDVSKWKPSPHEFSSALALLPQHERSSILR 39

The following BLAST results are available for this feature:

BLAST of Clc05G24045 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038891392.1	7.9e-12	92.31	L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase-like [...	[more]
XP_022968343.1	1.8e-11	92.31	L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase-like [...	[more]
XP_023542347.1	1.8e-11	92.31	L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase-like [...	[more]
XP_004135034.1	2.3e-11	89.74	L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase isofor...	[more]
KAG6573886.1	6.7e-11	89.74	L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase, parti...	[more]

BLAST of Clc05G24045 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc05G24045 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HXR6	8.5e-12	92.31	L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase-like O...	[more]
A0A0A0KRD2	1.1e-11	89.74	ACPS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G614660 PE=4 S...	[more]
A0A5A7STW8	7.2e-11	87.18	L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase-like O...	[more]
A0A1S3BGH5	7.2e-11	87.18	L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase-like O...	[more]
A0A6J1DBY1	9.4e-11	82.05	L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase-like i...	[more]

BLAST of Clc05G24045 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR037143	4'-phosphopantetheinyl transferase domain superfamily	GENE3D	3.90.470.20		coord: 2..61 e-value: 9.1E-7 score: 30.5

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc05G24045.1	Clc05G24045.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019878	lysine biosynthetic process via aminoadipic acid
biological_process	GO:0018215	protein phosphopantetheinylation
cellular_component	GO:0005829	cytosol
molecular_function	GO:0008897	holo-[acyl-carrier-protein] synthase activity
molecular_function	GO:0000287	magnesium ion binding