Clc05G23460 (gene) Watermelon (cordophanus) v2

Overview
NameClc05G23460
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
LocationClcChr05: 31509914 .. 31512669 (+)
RNA-Seq ExpressionClc05G23460
SyntenyClc05G23460
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCTACGACATGTTCCTCTTCTCTTCTTCCTTTTAACTTTGGATTCTTCTTCTACAATTATGGCAACGTCAAGAGCCATGCTTGGCATAACACCTACTCCAACCACGTCTGCTGAAGTACCTACTCCCACAATTGATGCAAAACCTTCACCACCAGAGTCATCTGAAGCTACGTTCATTGCAAGATCTGACTCGTCAATTTCCATGCCTCCAAGTTTTGGTGACTTTGTTGCTTTTGAGGTTCCTAGTGAAATAGGAGCAAATCCACCAATGCCTAATTGGGTCATTCGAAGTTGTAAGCCTAAAGGTCGAATGAGGTATTCTGCTCCCAGTGATCGTAGGAACAGTGAACCTCTTGTCTCAATTGTATGTTCAAACATGTCATGAAAACCTAAATTTACAAGTCTTATATATACTTATTAAATACTACTTAGTTTCTCTTTGTACTTATATGTCAACTCTTAAAGTGTTTATACTGTACAATGCGAAGTCCAGTTACTATAGAAACCTAATTTGATTAAATTACTTTCGTGGTTAAAGAATTATAGGAGGTCCTGATTGATTTTTATTTATTTAATTTCCAAGAAAAAAAGGCTTCAAAGTTACTTTCAGTGAAGACGATCATTAGTTAGGAGATACCATACCCACTTTTAATTACTATTTTAATTGAATACTCAATAAATTATGAGAAATTAGTAGAAAAGTGGAAATAGAGACAAGCTGAAAGAGAAATTAAAACAAAAAAGAATTGGTCGAAAAGTGGAAATAGAATCGATTAGTGGACTAAAATAATAATCGTTTAGTGGAGTATTGGGCCAACAAGACACAGCCTGTGCTCATTCCACCGACAGGAGAAGGAGGTCACACTGATCTGTGAAACCCAAACTCACGCGATGGCCCAATGAATCCTTCCCTTTGAACCGAACCAATCTTCAACCAACAAAATACCCCCGTTCAGTATACAATCTTGCACAACCAAGCCCAGCATAAGTTTAGACTCCTGCAATTGGATTCCATTTTTTAATAAATTTCTTCTTAAAAACATCTTTTACTCCATGTAATTCGATTTTCTAGGATTTTCAAATTTTCTAATCGATTCTAAGAAGTTGCGCAACTTATGGCTTAGATTATGAGTCCTTTATTATAGAGTAAAATTTGTATATAATATTAGAATTACCAACGGTGTCCAATATGTGGTAAGAAAGATCCCAAATGATCTCAAATTTAAGTTAATAAAATGTGAACTTTCGAGGGAGAGAAATGTTGGTTGGGAAATTGACAAAATGCCCTCCTCTCACTTTATTTTTTTTAAAAAAAAACTTAATTACTTTTCTACCCTTTCCAACTTATTACATACCATTACCACAATTACTAATAAATTAACCAAACTATTTCCATAATTTCTAATAAATTAACCAACTTAAAAAAAAGTACTCTACATAGTCGTGATTTGTCAATACATTACGTAAAAAGTATTGAATATCTAGATCATTTCTTTTCATCTTTTCGAATTAGCTATGTTGACAACATCTTCATCATTCTCAAATTCCAAATAACGATACTTAGCATCTAGTTCATACCTCTTCATACCCTCTACGTCATTCAAATATTTTCTTCTTAGTCTGACATGGGTAGCATCCCTATCTAGTGTTTCAACTCCGTAACCAGATCAAACTCTCTCCACCCAAATGACATTTTCGTGTCCAGTAAACTAAAACTAATAGTATCTCTCCTAGTCTCCCTAACCTCCCTAAGGAGAATATAATGAATTAAGGGTCCATTGAACATAATGTTCGCATCTAATATGGCCCAAAACAAGTTTGCCTAAACATAGCTAATTGGGTAGGAGTTAATTTTTTCCTAAGGCTAGTTTGATCTTTTCCTAAGTGGGCACAGTAAGTTAGGGCAGTAGAAAAAATGGTCATTATGAGAGATTTTGGTAACCAAATCCATCATACCTACATTATTAATGCAAATAATATACATTAATAAATAAAATATTTAGCCAACAAAAAAAAAAATCTAAAATAAAAGAATAAAGGAAATCCTGGTGAATACCTAACTCAGGTAGTGACCGGGCCAAAAAATAGAGAGCTATTATCGATTGAGCCCAGTTAGAACCTGGCCTGGGTAGTGATTGGGCCAAAAAACAGAGAGCATTTACCGACTGAGCCTAATCACTACCTGACCAGGGTAAAGATTGAGCCAAATCCCACCCCTTGGTTTACTATTATATTAGACCCGCCCAAGGTAAAGACCGGGCCAAACCTACTCTGGGTCCCCACCTATGTCGCCCGACTAATACTCGACCAGGGTAAAGATCAGGTCAATATCCTTCTATTGTGTTAGGCTTGGTCAAGACCCGTCCAGAGTAAGACCAAGCCAAACTTACTCCGAGGCGCCCACCAATCTCACCCCGACCAAGGCAAAGACCAGGCCAACATCCTCCTATAGTGTTAGGCCCGGTCAAGACTGGCTCAAGGTAAGATCGGGCCAAAAAACAGAGAGACCCCCACCTACCTCGCTCGGTCAATACCCACCTAGGGCAAGACCAGGCCAAAAAACAGAGAGTTCCCCAACTATCTCACCTGGTCTGTACCCGACCAGGGAAAGGACTAGGCGTACGCTTCCCCCAGTCTATACCCGATGAGGGTTGGGACCGGGAGCCACTTTCGTCTTCCCCAAAGTTACACCCGACCAATATCCGGTTGTCTTCTGATGAAGCCCGATCAAGTATTCATCGATTTTCATAA

mRNA sequence

ATGGCTCTACGACATGTTCCTCTTCTCTTCTTCCTTTTAACTTTGGATTCTTCTTCTACAATTATGGCAACGTCAAGAGCCATGCTTGGCATAACACCTACTCCAACCACGTCTGCTGAAGTACCTACTCCCACAATTGATGCAAAACCTTCACCACCAGAGTCATCTGAAGCTACGTTCATTGCAAGATCTGACTCGTCAATTTCCATGCCTCCAAGTTTTGGTGACTTTGTTGCTTTTGAGGTTCCTAGTGAAATAGGAGCAAATCCACCAATGCCTAATTGGGTCATTCGAAGTTGTAAGCCTAAAGGTCGAATGAGGCTTGGTCAAGACCCGTCCAGAGTAAGACCAAGCCAAACTTACTCCGAGGCGCCCACCAATCTCACCCCGACCAAGGCAAAGACCAGGCCAACATCCTCCTATAGTGTTAGGCCCGGTCAAGACTGGCTCAAGGCCAAAAAACAGAGAGTTCCCCAACTATCTCACCTGGTCTGTACCCGACCAGGGAAAGGACTAGGCGTACGCTTCCCCCAGTCTATACCCGATGAGGGTTGGGACCGGGAGCCACTTTCGTCTTCCCCAAAGTTACACCCGACCAATATCCGGTTGTCTTCTGATGAAGCCCGATCAAGTATTCATCGATTTTCATAA

Coding sequence (CDS)

ATGGCTCTACGACATGTTCCTCTTCTCTTCTTCCTTTTAACTTTGGATTCTTCTTCTACAATTATGGCAACGTCAAGAGCCATGCTTGGCATAACACCTACTCCAACCACGTCTGCTGAAGTACCTACTCCCACAATTGATGCAAAACCTTCACCACCAGAGTCATCTGAAGCTACGTTCATTGCAAGATCTGACTCGTCAATTTCCATGCCTCCAAGTTTTGGTGACTTTGTTGCTTTTGAGGTTCCTAGTGAAATAGGAGCAAATCCACCAATGCCTAATTGGGTCATTCGAAGTTGTAAGCCTAAAGGTCGAATGAGGCTTGGTCAAGACCCGTCCAGAGTAAGACCAAGCCAAACTTACTCCGAGGCGCCCACCAATCTCACCCCGACCAAGGCAAAGACCAGGCCAACATCCTCCTATAGTGTTAGGCCCGGTCAAGACTGGCTCAAGGCCAAAAAACAGAGAGTTCCCCAACTATCTCACCTGGTCTGTACCCGACCAGGGAAAGGACTAGGCGTACGCTTCCCCCAGTCTATACCCGATGAGGGTTGGGACCGGGAGCCACTTTCGTCTTCCCCAAAGTTACACCCGACCAATATCCGGTTGTCTTCTGATGAAGCCCGATCAAGTATTCATCGATTTTCATAA

Protein sequence

MALRHVPLLFFLLTLDSSSTIMATSRAMLGITPTPTTSAEVPTPTIDAKPSPPESSEATFIARSDSSISMPPSFGDFVAFEVPSEIGANPPMPNWVIRSCKPKGRMRLGQDPSRVRPSQTYSEAPTNLTPTKAKTRPTSSYSVRPGQDWLKAKKQRVPQLSHLVCTRPGKGLGVRFPQSIPDEGWDREPLSSSPKLHPTNIRLSSDEARSSIHRFS
Homology
[Close]
BLAST of Clc05G23460 vs. NCBI nr
Match: TYK09256.1 (hypothetical protein E5676_scaffold475G002500 [Cucumis melo var. makuwa])

HSP 1 Score: 129.8 bits (325), Expect = 2.8e-26
Identity = 81/135 (60.00%), Postives = 90/135 (66.67%), Query Frame = 0 

Query: 1   MALRHVPLLFFL---LTLDSSSTIMATSRAMLGITPTPTTSAEVPTPTIDAKP--SPPES 60
           MAL   PLLFFL   L L SSST MATSRAML I PTPT S + PT  +DAKP  S P  
Sbjct: 1   MALHRAPLLFFLFLVLALASSSTTMATSRAMLFIAPTPTMSTQAPTLIVDAKPSASSPPL 60

Query: 61  SEATFIAR-SDSSISMPPSFGDFVAFEVPSEIGANPPMPNWVIRSCKPKGRMRLGQDPSR 120
           SEAT +A    SS SMPPSFGDFVAFEVPSE+ ANPP P+W+IRSCKPKGRMR      R
Sbjct: 61  SEATLVAGFGSSSTSMPPSFGDFVAFEVPSEVSANPPTPDWMIRSCKPKGRMRYSAPSDR 120

Query: 121 VRPSQTYSEAPTNLT 130
                  S   +N++
Sbjct: 121 RNSEPLISIVCSNMS 135

[Close]
BLAST of Clc05G23460 vs. NCBI nr
Match: KAE8648853.1 (hypothetical protein Csa_008932 [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 1.8e-25
Identity = 79/118 (66.95%), Postives = 88/118 (74.58%), Query Frame = 0 

Query: 1   MALRHVPLLFF---LLTLDSSSTIMATSRAMLGITPTPTTSAEVPTPTIDAKPSPPES-S 60
           MALRH PLLFF   +L L SSST MATSRAML I          PTPTIDAKPSPP + S
Sbjct: 1   MALRHAPLLFFFLLVLALASSSTTMATSRAMLFIE---------PTPTIDAKPSPPPTVS 60

Query: 61  EATFIARSDSSI--SMPPSFGDFVAFEVPSEIG-ANPPMPNWVIRSCKPKGRMRLGQD 112
           EAT +A   SS+  SMPPSFGDFVAFEVPSE+  ANPPMP+W+IRSCKPKGRMR  ++
Sbjct: 61  EATLVAGFGSSLSTSMPPSFGDFVAFEVPSEVSTANPPMPDWMIRSCKPKGRMRSSEN 109

[Close]
BLAST of Clc05G23460 vs. NCBI nr
Match: KAG6573847.1 (hypothetical protein SDJN03_27734, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 72.4 bits (176), Expect = 5.4e-09
Identity = 50/109 (45.87%), Postives = 62/109 (56.88%), Query Frame = 0 

Query: 22  MATSRAMLGI-----------TPTPTTSAEVPTP-----TIDAKPSPPESSEATFIARSD 81
           MATSRAML +           +P+  +   +PTP     T D + S P + EAT +  S 
Sbjct: 1   MATSRAMLNVVSSDLAMISNSSPSTVSFPVIPTPSTSTTTFDGE-STPSTYEATTVVGSG 60

Query: 82  SSISMPPSFGDFVAFEVPSEIGANPPMPNWVIRSCKPKGRMRLGQDPSR 115
           S+I M P+  DFVAFEVP+ + A PPM N VIRSCKPKGRMR      R
Sbjct: 61  SAIFMSPTSNDFVAFEVPNGMDAKPPMSNRVIRSCKPKGRMRYSAPSDR 108

[Close]
BLAST of Clc05G23460 vs. ExPASy TrEMBL
Match: A0A5D3CFX3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002500 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.4e-26
Identity = 81/135 (60.00%), Postives = 90/135 (66.67%), Query Frame = 0 

Query: 1   MALRHVPLLFFL---LTLDSSSTIMATSRAMLGITPTPTTSAEVPTPTIDAKP--SPPES 60
           MAL   PLLFFL   L L SSST MATSRAML I PTPT S + PT  +DAKP  S P  
Sbjct: 1   MALHRAPLLFFLFLVLALASSSTTMATSRAMLFIAPTPTMSTQAPTLIVDAKPSASSPPL 60

Query: 61  SEATFIAR-SDSSISMPPSFGDFVAFEVPSEIGANPPMPNWVIRSCKPKGRMRLGQDPSR 120
           SEAT +A    SS SMPPSFGDFVAFEVPSE+ ANPP P+W+IRSCKPKGRMR      R
Sbjct: 61  SEATLVAGFGSSSTSMPPSFGDFVAFEVPSEVSANPPTPDWMIRSCKPKGRMRYSAPSDR 120

Query: 121 VRPSQTYSEAPTNLT 130
                  S   +N++
Sbjct: 121 RNSEPLISIVCSNMS 135

[Close]
BLAST of Clc05G23460 vs. ExPASy TrEMBL
Match: A0A0A0KRI3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G622650 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 6.2e-19
Identity = 66/112 (58.93%), Postives = 75/112 (66.96%), Query Frame = 0 

Query: 22  MATSRAMLGITPTPTTSAEVPTPTIDAKPSPPES-SEATFIARSDSSI--SMPPSFGDFV 81
           MATSRAML I          PTPTIDAKPSPP + SEAT +A   SS+  SMPPSFGDFV
Sbjct: 1   MATSRAMLFIE---------PTPTIDAKPSPPPTVSEATLVAGFGSSLSTSMPPSFGDFV 60

Query: 82  AFEVPSEIG-ANPPMPNWVIRSCKPKGRMRLGQDPSRVRPSQTYSEAPTNLT 130
           AFEVPSE+  ANPPMP+W+IRSCKPKGRMR      R       S   +N++
Sbjct: 61  AFEVPSEVSTANPPMPDWMIRSCKPKGRMRYSAPSDRRNSEPLVSIVCSNMS 103

The following BLAST results are available for this feature:
BLAST of Clc05G23460 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK09256.12.8e-2660.00hypothetical protein E5676_scaffold475G002500 [Cucumis melo var. makuwa][more]
KAE8648853.11.8e-2566.95hypothetical protein Csa_008932 [Cucumis sativus][more]
KAG6573847.15.4e-0945.87hypothetical protein SDJN03_27734, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Clc05G23460 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc05G23460 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CFX31.4e-2660.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KRI36.2e-1958.93Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G622650 PE=4 SV=1[more]
BLAST of Clc05G23460 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 113..144
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 105..144
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 173..216
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 33..56

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc05G23460.2Clc05G23460.2mRNA