Clc05G22750 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc05G22750
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Glycosyl hydrolase family 35 protein
Location	ClcChr05: 30914719 .. 30915826 (+)
RNA-Seq Expression	Clc05G22750
Synteny	Clc05G22750

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCTTTCTGGGTTTTGCGTTTTGTTTTTCGTCCTCCAAACAACTTTATTGCTGCTTTTCTTTCCCAGCTATATAAATGCCTCCTCCGTCTCCGGTAATTTGGAAGTTAATGTTTGTTTTATCACGTTTTTTACTTCTTTATTTGCTTATCCATTCATATGTACTTTGGCCCATCTGTTTGCCTTATCACTTCGACGTTGATCTTACTGCATTTATATTAATGTCTTCTTATTTGTAATGTTACTTCGGTTTTTTGGTTTTATTGTGCTAAGTTAATTAAAACCCATTGTTCTCCAGGATTTCTAAAGCTAATTCAGAACCATTCTGTTGTCCTTTTAATGTTTCTGTTTTGTAACACTATGTTCTTCTTGTCCTTTCCCTATCTTTAACAATGTTTGTATGCTCATACTAAAGAATGACTGCAGGTTGTATCACTTATTTAAGCAGAACTAGTGCATCAAGTTACAGCATTTGGTTTACCCCTGGCTCATCCATTTTCAAGTCCAATTTAAACATTTTTCTCCTCGTGTATTGAAATTCGAAGTTATTGCATCAAGTATATGATAGACTGATAGAGATTGAGTAGTAACTTTATATGTTATTCTACTGTAGTTTTGCATGTTGATTTTGCTGTGCTTTTGTTGACTGCAATCACAGATGTGGCTCTGAACCAACACCATGTTAATCCAAACAAATGCTTATCTGACATACCATTAAACCGGAAGCTGAAGGTACTTGCTTTTCAAAGCCTTCAAAACCAACGAGTCATTTTCACTTGTGTCATAATAATAATACATCCCTACTTAGAGACGAGCATAGTTTCTTCCATATTAATTGCTTCTTGATCAATGAGATTGGTTACAACTGTCTATAATGAGTGGAATTGAATTCCTTTTTTGGTTCTCAGTTCCAGACTGATGAACACTATAGCCTGGTGAGAAAGAAGGTTCGCCCAGGTGATCTAAATCTTGATGACTACCATCCCATCGATCCAGTTCCAAGTTCAAAGACATCAGTCAAACCCGGGCCGATAGAGCATGGTGCACCTCTCCTGCCTCATATGCCAAATCCTCCACCTCCTGATCAGCCGGGCGATTACGCTTAA

mRNA sequence

ATGAAGCTTTCTGGGTTTTGCGTTTTGTTTTTCGTCCTCCAAACAACTTTATTGCTGCTTTTCTTTCCCAGCTATATAAATGCCTCCTCCGTCTCCGTTTTGCATGTTGATTTTGCTGTGCTTTTGTTGACTGCAATCACAGATGTGGCTCTGAACCAACACCATGTTAATCCAAACAAATGCTTATCTGACATACCATTAAACCGGAAGCTGAAGTTCCAGACTGATGAACACTATAGCCTGGTGAGAAAGAAGGTTCGCCCAGGTGATCTAAATCTTGATGACTACCATCCCATCGATCCAGTTCCAAGTTCAAAGACATCAGTCAAACCCGGGCCGATAGAGCATGGTGCACCTCTCCTGCCTCATATGCCAAATCCTCCACCTCCTGATCAGCCGGGCGATTACGCTTAA

Coding sequence (CDS)

ATGAAGCTTTCTGGGTTTTGCGTTTTGTTTTTCGTCCTCCAAACAACTTTATTGCTGCTTTTCTTTCCCAGCTATATAAATGCCTCCTCCGTCTCCGTTTTGCATGTTGATTTTGCTGTGCTTTTGTTGACTGCAATCACAGATGTGGCTCTGAACCAACACCATGTTAATCCAAACAAATGCTTATCTGACATACCATTAAACCGGAAGCTGAAGTTCCAGACTGATGAACACTATAGCCTGGTGAGAAAGAAGGTTCGCCCAGGTGATCTAAATCTTGATGACTACCATCCCATCGATCCAGTTCCAAGTTCAAAGACATCAGTCAAACCCGGGCCGATAGAGCATGGTGCACCTCTCCTGCCTCATATGCCAAATCCTCCACCTCCTGATCAGCCGGGCGATTACGCTTAA

Protein sequence

MKLSGFCVLFFVLQTTLLLLFFPSYINASSVSVLHVDFAVLLLTAITDVALNQHHVNPNKCLSDIPLNRKLKFQTDEHYSLVRKKVRPGDLNLDDYHPIDPVPSSKTSVKPGPIEHGAPLLPHMPNPPPPDQPGDYA

Homology

[Close]

BLAST of Clc05G22750 vs. NCBI nr
Match: XP_038899330.1 (uncharacterized protein LOC120086661 [Benincasa hispida] >XP_038899331.1 uncharacterized protein LOC120086661 [Benincasa hispida] >XP_038899332.1 uncharacterized protein LOC120086661 [Benincasa hispida])

HSP 1 Score: 219.2 bits (557), Expect = 2.3e-53
Identity = 114/137 (83.21%), Postives = 115/137 (83.94%), Query Frame = 0


Query: 1   MKLSGFCVLFFVLQTTLLLLFFPSYINASSVSVLHVDFAVLLLTAITDVALNQHHVNPNK 60
           MKLSGF VLFFVLQTTLL+LFFPSYINASS S               DVALN HHVNPNK
Sbjct: 1   MKLSGFWVLFFVLQTTLLMLFFPSYINASSSS---------------DVALNNHHVNPNK 60

Query: 61  CLSDIPLNRKLKFQTDEHYSLVRKKVRPGDLNLDDYHPIDPVPSSKTSVKPGPIEHGAPL 120
           CLSDIPLNRKLKFQTDEHYSL RKKV PGDLNLDDYHPIDPVPSSKTSVKPGPIEHGAPL
Sbjct: 61  CLSDIPLNRKLKFQTDEHYSLGRKKVHPGDLNLDDYHPIDPVPSSKTSVKPGPIEHGAPL 120

Query: 121 LPHMPNPPPPDQPGDYA 138
           LPHMPN PPP QPGDYA
Sbjct: 121 LPHMPNSPPPHQPGDYA 122

[Close]

BLAST of Clc05G22750 vs. NCBI nr
Match: XP_008452636.1 (PREDICTED: uncharacterized protein LOC103493595 [Cucumis melo])

HSP 1 Score: 207.6 bits (527), Expect = 6.8e-50
Identity = 108/137 (78.83%), Postives = 112/137 (81.75%), Query Frame = 0


Query: 1   MKLSGFCVLFFVLQTTLLLLFFPSYINASSVSVLHVDFAVLLLTAITDVALNQHHVNPNK 60
           MKLSGF VLFFVLQTTLLLLFFP YINASS S               D+ALNQHHVN  K
Sbjct: 1   MKLSGFWVLFFVLQTTLLLLFFPGYINASSSS---------------DIALNQHHVNAKK 60

Query: 61  CLSDIPLNRKLKFQTDEHYSLVRKKVRPGDLNLDDYHPIDPVPSSKTSVKPGPIEHGAPL 120
           CLSD+PLNRKLKFQTDEH +L RKKV PGDLNLDDYHPIDPVPSSKTSVKPGPIEH APL
Sbjct: 61  CLSDMPLNRKLKFQTDEHSNLGRKKVHPGDLNLDDYHPIDPVPSSKTSVKPGPIEHSAPL 120

Query: 121 LPHMPNPPPPDQPGDYA 138
           LPHMPNPPPP+QPG YA
Sbjct: 121 LPHMPNPPPPNQPGGYA 122

[Close]

BLAST of Clc05G22750 vs. NCBI nr
Match: XP_011654147.1 (uncharacterized protein LOC105435309 [Cucumis sativus])

HSP 1 Score: 199.1 bits (505), Expect = 2.4e-47
Identity = 106/137 (77.37%), Postives = 108/137 (78.83%), Query Frame = 0


Query: 1   MKLSGFCVLFFVLQTTLLLLFFPSYINASSVSVLHVDFAVLLLTAITDVALNQHHVNPNK 60
           MKLSGF V FFVLQTTLLL FFPSYINASS S               D+ALN HHVN NK
Sbjct: 1   MKLSGFWVFFFVLQTTLLLHFFPSYINASSSS---------------DIALNHHHVNANK 60

Query: 61  CLSDIPLNRKLKFQTDEHYSLVRKKVRPGDLNLDDYHPIDPVPSSKTSVKPGPIEHGAPL 120
           CLSDI LNRKLKFQTDEH +  RKKV P DLNLDDYHPIDPVPSSKTSVKPGPIEHGAPL
Sbjct: 61  CLSDILLNRKLKFQTDEHCNHGRKKVHPDDLNLDDYHPIDPVPSSKTSVKPGPIEHGAPL 120

Query: 121 LPHMPNPPPPDQPGDYA 138
           LPHMPNPPPP QPG YA
Sbjct: 121 LPHMPNPPPPSQPGGYA 122

[Close]

BLAST of Clc05G22750 vs. NCBI nr
Match: XP_022977124.1 (uncharacterized protein LOC111477287 [Cucurbita maxima])

HSP 1 Score: 188.0 bits (476), Expect = 5.6e-44
Identity = 99/137 (72.26%), Postives = 106/137 (77.37%), Query Frame = 0


Query: 1   MKLSGFCVLFFVLQTTLLLLFFPSYINASSVSVLHVDFAVLLLTAITDVALNQHHVNPNK 60
           MKLSGF V F VLQTTLLL  FPS++NASS S               D+AL+ HHVNPN+
Sbjct: 54  MKLSGFWVFFLVLQTTLLLSCFPSHLNASSTS---------------DMALSHHHVNPNE 113

Query: 61  CLSDIPLNRKLKFQTDEHYSLVRKKVRPGDLNLDDYHPIDPVPSSKTSVKPGPIEHGAPL 120
           CLSD+P NRKLKFQTDEH SL +K V PGDL LDDY  IDPVPSSKTSVKPGPIEHGAPL
Sbjct: 114 CLSDLPFNRKLKFQTDEHNSLGKKMVHPGDLKLDDYPTIDPVPSSKTSVKPGPIEHGAPL 173

Query: 121 LPHMPNPPPPDQPGDYA 138
           LPHMP PPPPDQPGDYA
Sbjct: 174 LPHMPIPPPPDQPGDYA 175

[Close]

BLAST of Clc05G22750 vs. NCBI nr
Match: XP_022937047.1 (uncharacterized protein LOC111443464 [Cucurbita moschata])

HSP 1 Score: 187.2 bits (474), Expect = 9.5e-44
Identity = 99/137 (72.26%), Postives = 106/137 (77.37%), Query Frame = 0


Query: 1   MKLSGFCVLFFVLQTTLLLLFFPSYINASSVSVLHVDFAVLLLTAITDVALNQHHVNPNK 60
           MKLSG  V F VLQTTLLL  FPSY+NASS S               D+AL+ HHV+PN+
Sbjct: 54  MKLSGLWVFFLVLQTTLLLSCFPSYLNASSTS---------------DMALSHHHVSPNE 113

Query: 61  CLSDIPLNRKLKFQTDEHYSLVRKKVRPGDLNLDDYHPIDPVPSSKTSVKPGPIEHGAPL 120
           CLSDIP NRKLKFQTD+H SL +KKV PGDL LDDY  IDPVPSSKTSVKPGPIEHGAPL
Sbjct: 114 CLSDIPFNRKLKFQTDKHNSLGKKKVHPGDLKLDDYPTIDPVPSSKTSVKPGPIEHGAPL 173

Query: 121 LPHMPNPPPPDQPGDYA 138
           LPHMP PPPPDQPGDYA
Sbjct: 174 LPHMPIPPPPDQPGDYA 175

[Close]

BLAST of Clc05G22750 vs. ExPASy TrEMBL
Match: A0A1S3BV38 (uncharacterized protein LOC103493595 OS=Cucumis melo OX=3656 GN=LOC103493595 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 3.3e-50
Identity = 108/137 (78.83%), Postives = 112/137 (81.75%), Query Frame = 0


Query: 1   MKLSGFCVLFFVLQTTLLLLFFPSYINASSVSVLHVDFAVLLLTAITDVALNQHHVNPNK 60
           MKLSGF VLFFVLQTTLLLLFFP YINASS S               D+ALNQHHVN  K
Sbjct: 1   MKLSGFWVLFFVLQTTLLLLFFPGYINASSSS---------------DIALNQHHVNAKK 60

Query: 61  CLSDIPLNRKLKFQTDEHYSLVRKKVRPGDLNLDDYHPIDPVPSSKTSVKPGPIEHGAPL 120
           CLSD+PLNRKLKFQTDEH +L RKKV PGDLNLDDYHPIDPVPSSKTSVKPGPIEH APL
Sbjct: 61  CLSDMPLNRKLKFQTDEHSNLGRKKVHPGDLNLDDYHPIDPVPSSKTSVKPGPIEHSAPL 120

Query: 121 LPHMPNPPPPDQPGDYA 138
           LPHMPNPPPP+QPG YA
Sbjct: 121 LPHMPNPPPPNQPGGYA 122

[Close]

BLAST of Clc05G22750 vs. ExPASy TrEMBL
Match: A0A0A0L2J3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G642400 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 1.2e-47
Identity = 106/137 (77.37%), Postives = 108/137 (78.83%), Query Frame = 0


Query: 1   MKLSGFCVLFFVLQTTLLLLFFPSYINASSVSVLHVDFAVLLLTAITDVALNQHHVNPNK 60
           MKLSGF V FFVLQTTLLL FFPSYINASS S               D+ALN HHVN NK
Sbjct: 1   MKLSGFWVFFFVLQTTLLLHFFPSYINASSSS---------------DIALNHHHVNANK 60

Query: 61  CLSDIPLNRKLKFQTDEHYSLVRKKVRPGDLNLDDYHPIDPVPSSKTSVKPGPIEHGAPL 120
           CLSDI LNRKLKFQTDEH +  RKKV P DLNLDDYHPIDPVPSSKTSVKPGPIEHGAPL
Sbjct: 61  CLSDILLNRKLKFQTDEHCNHGRKKVHPDDLNLDDYHPIDPVPSSKTSVKPGPIEHGAPL 120

Query: 121 LPHMPNPPPPDQPGDYA 138
           LPHMPNPPPP QPG YA
Sbjct: 121 LPHMPNPPPPSQPGGYA 122

[Close]

BLAST of Clc05G22750 vs. ExPASy TrEMBL
Match: A0A6J1IQK4 (uncharacterized protein LOC111477287 OS=Cucurbita maxima OX=3661 GN=LOC111477287 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 2.7e-44
Identity = 99/137 (72.26%), Postives = 106/137 (77.37%), Query Frame = 0


Query: 1   MKLSGFCVLFFVLQTTLLLLFFPSYINASSVSVLHVDFAVLLLTAITDVALNQHHVNPNK 60
           MKLSGF V F VLQTTLLL  FPS++NASS S               D+AL+ HHVNPN+
Sbjct: 54  MKLSGFWVFFLVLQTTLLLSCFPSHLNASSTS---------------DMALSHHHVNPNE 113

Query: 61  CLSDIPLNRKLKFQTDEHYSLVRKKVRPGDLNLDDYHPIDPVPSSKTSVKPGPIEHGAPL 120
           CLSD+P NRKLKFQTDEH SL +K V PGDL LDDY  IDPVPSSKTSVKPGPIEHGAPL
Sbjct: 114 CLSDLPFNRKLKFQTDEHNSLGKKMVHPGDLKLDDYPTIDPVPSSKTSVKPGPIEHGAPL 173

Query: 121 LPHMPNPPPPDQPGDYA 138
           LPHMP PPPPDQPGDYA
Sbjct: 174 LPHMPIPPPPDQPGDYA 175

[Close]

BLAST of Clc05G22750 vs. ExPASy TrEMBL
Match: A0A6J1FA15 (uncharacterized protein LOC111443464 OS=Cucurbita moschata OX=3662 GN=LOC111443464 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 4.6e-44
Identity = 99/137 (72.26%), Postives = 106/137 (77.37%), Query Frame = 0


Query: 1   MKLSGFCVLFFVLQTTLLLLFFPSYINASSVSVLHVDFAVLLLTAITDVALNQHHVNPNK 60
           MKLSG  V F VLQTTLLL  FPSY+NASS S               D+AL+ HHV+PN+
Sbjct: 54  MKLSGLWVFFLVLQTTLLLSCFPSYLNASSTS---------------DMALSHHHVSPNE 113

Query: 61  CLSDIPLNRKLKFQTDEHYSLVRKKVRPGDLNLDDYHPIDPVPSSKTSVKPGPIEHGAPL 120
           CLSDIP NRKLKFQTD+H SL +KKV PGDL LDDY  IDPVPSSKTSVKPGPIEHGAPL
Sbjct: 114 CLSDIPFNRKLKFQTDKHNSLGKKKVHPGDLKLDDYPTIDPVPSSKTSVKPGPIEHGAPL 173

Query: 121 LPHMPNPPPPDQPGDYA 138
           LPHMP PPPPDQPGDYA
Sbjct: 174 LPHMPIPPPPDQPGDYA 175

[Close]

BLAST of Clc05G22750 vs. ExPASy TrEMBL
Match: A0A6J1DLK4 (uncharacterized protein LOC111021399 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111021399 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 1.1e-40
Identity = 96/138 (69.57%), Postives = 104/138 (75.36%), Query Frame = 0


Query: 1   MKLSGFCVLFFVLQTTLLLLFFPSYINASSVSVLHVDFAVLLLTAITDVALNQHHVNPNK 60
           MKLSGF VLFF+LQ +LLLLFFPSYINAS  SV              D+ALN  H+ PN+
Sbjct: 1   MKLSGFWVLFFLLQMSLLLLFFPSYINASPSSV-------------ADMALNHRHLEPNE 60

Query: 61  CLSDIPLNRKLKFQTDEHYSLVRKKVRPGDLNLDDYHPIDPVPSSKTSVKPGPIEHGAPL 120
             S IPLNRKLKFQ DE+ S  R KV  GDLNLDDYHPIDPVPSSKTSVKPGPIEHG PL
Sbjct: 61  SFSAIPLNRKLKFQNDEYDSPRRNKVHQGDLNLDDYHPIDPVPSSKTSVKPGPIEHGTPL 120

Query: 121 LPHMPNPPPPD--QPGDY 137
           LPH+PNPPPPD  QPGD+
Sbjct: 121 LPHIPNPPPPDQPQPGDF 125

[Close]

BLAST of Clc05G22750 vs. TAIR 10
Match: AT5G01075.1 (Glycosyl hydrolase family 35 protein )

HSP 1 Score: 55.1 bits (131), Expect = 5.2e-08
Identity = 24/41 (58.54%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 91  LNLDDYH-PIDPVPSSKTSVKPGPIEHGAPLLPHMPNPPPP 131
           + L+DY+ P+DP P++K S+KPGPIEHG PL P++P PP P
Sbjct: 28  VGLEDYNFPVDPTPTTKASIKPGPIEHGTPLNPYIPKPPSP 68

The following BLAST results are available for this feature:

BLAST of Clc05G22750 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899330.1	2.3e-53	83.21	uncharacterized protein LOC120086661 [Benincasa hispida] >XP_038899331.1 unchara...	[more]
XP_008452636.1	6.8e-50	78.83	PREDICTED: uncharacterized protein LOC103493595 [Cucumis melo]	[more]
XP_011654147.1	2.4e-47	77.37	uncharacterized protein LOC105435309 [Cucumis sativus]	[more]
XP_022977124.1	5.6e-44	72.26	uncharacterized protein LOC111477287 [Cucurbita maxima]	[more]
XP_022937047.1	9.5e-44	72.26	uncharacterized protein LOC111443464 [Cucurbita moschata]	[more]

BLAST of Clc05G22750 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc05G22750 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BV38	3.3e-50	78.83	uncharacterized protein LOC103493595 OS=Cucumis melo OX=3656 GN=LOC103493595 PE=...	[more]
A0A0A0L2J3	1.2e-47	77.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G642400 PE=4 SV=1	[more]
A0A6J1IQK4	2.7e-44	72.26	uncharacterized protein LOC111477287 OS=Cucurbita maxima OX=3661 GN=LOC111477287...	[more]
A0A6J1FA15	4.6e-44	72.26	uncharacterized protein LOC111443464 OS=Cucurbita moschata OX=3662 GN=LOC1114434...	[more]
A0A6J1DLK4	1.1e-40	69.57	uncharacterized protein LOC111021399 isoform X1 OS=Momordica charantia OX=3673 G...	[more]

BLAST of Clc05G22750 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G01075.1	5.2e-08	58.54	Glycosyl hydrolase family 35 protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 89..137
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 118..137
None	No IPR available	PANTHER	PTHR37249:SF3	BNAANNG14020D PROTEIN	coord: 1..135
None	No IPR available	PANTHER	PTHR37249	OS03G0206201 PROTEIN	coord: 1..135

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc05G22750.2	Clc05G22750.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane