Clc05G22615 (gene) Watermelon (cordophanus) v2

Overview
NameClc05G22615
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
LocationClcChr05: 30845160 .. 30845414 (-)
RNA-Seq ExpressionClc05G22615
SyntenyClc05G22615
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCATTTCCACTCTCCATGGAAGCTCGGCTCCTTCTGTTAATGGCGGTTATCACTCTTCTGGTCTCTGGTGATAACAAAGCGACAATGGGGGTTGCCCTCGTTGATCATCATCCACTGTCAAACATGCAGGAGAAGCACCGGAAGCATCTGCCGTCGCCGTCGTTGCCCCCGCCTTGGAGTCACTCGTTTAATGCTCTCTTTGCAAGCAAGAGGAAGGTTCCAAACACTTGGGATCCGCTCCACAATCGTTGA

mRNA sequence

ATGCCATTTCCACTCTCCATGGAAGCTCGGCTCCTTCTGTTAATGGCGGTTATCACTCTTCTGGTCTCTGGTGATAACAAAGCGACAATGGGGGTTGCCCTCGTTGATCATCATCCACTGTCAAACATGCAGGAGAAGCACCGGAAGCATCTGCCGTCGCCGTCGTTGCCCCCGCCTTGGAGTCACTCGTTTAATGCTCTCTTTGCAAGCAAGAGGAAGGTTCCAAACACTTGGGATCCGCTCCACAATCGTTGA

Coding sequence (CDS)

ATGCCATTTCCACTCTCCATGGAAGCTCGGCTCCTTCTGTTAATGGCGGTTATCACTCTTCTGGTCTCTGGTGATAACAAAGCGACAATGGGGGTTGCCCTCGTTGATCATCATCCACTGTCAAACATGCAGGAGAAGCACCGGAAGCATCTGCCGTCGCCGTCGTTGCCCCCGCCTTGGAGTCACTCGTTTAATGCTCTCTTTGCAAGCAAGAGGAAGGTTCCAAACACTTGGGATCCGCTCCACAATCGTTGA

Protein sequence

MPFPLSMEARLLLLMAVITLLVSGDNKATMGVALVDHHPLSNMQEKHRKHLPSPSLPPPWSHSFNALFASKRKVPNTWDPLHNR
Homology
BLAST of Clc05G22615 vs. NCBI nr
Match: KAE8649873.1 (hypothetical protein Csa_012848, partial [Cucumis sativus])

HSP 1 Score: 115.5 bits (288), Expect = 2.2e-22
Identity = 57/70 (81.43%), Postives = 59/70 (84.29%), Query Frame = 0

Query: 18 ITLLVSGDNKATMG---VALVDHHPLSNMQEKHRKHLPSPSLPPPWSHSFNALFASKRKV 77
          ITLLVSGDNKATMG   VA +D HPLSNMQEKHRKHL   S PPP SH FNALFASKRKV
Sbjct: 1  ITLLVSGDNKATMGAAAVAFIDQHPLSNMQEKHRKHLQLLSSPPPRSHLFNALFASKRKV 60

Query: 78 PNTWDPLHNR 85
          PNTWDP+HNR
Sbjct: 61 PNTWDPIHNR 70

BLAST of Clc05G22615 vs. NCBI nr
Match: KAA0064426.1 (hypothetical protein E6C27_scaffold255G001340 [Cucumis melo var. makuwa] >TYK20161.1 hypothetical protein E5676_scaffold134G002930 [Cucumis melo var. makuwa])

HSP 1 Score: 103.2 bits (256), Expect = 1.1e-18
Identity = 59/72 (81.94%), Postives = 60/72 (83.33%), Query Frame = 0

Query: 7  MEARLLLLMAVITLLVSGDNKATMG--VALVDHHPLSNMQEKHRKHLPSPSLPPPWSHSF 66
          MEARLLLLMAVITLLVSG+NKATMG  VALVD HPLSNMQEKHRKHL   S PP  SH F
Sbjct: 1  MEARLLLLMAVITLLVSGNNKATMGVAVALVDQHPLSNMQEKHRKHLQLLSSPPLRSHLF 60

Query: 67 NALFASKRKVPN 77
          NALFASKRK  N
Sbjct: 61 NALFASKRKSMN 72

BLAST of Clc05G22615 vs. ExPASy TrEMBL
Match: A0A0A0KZW1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G641770 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.4e-27
Identity = 68/81 (83.95%), Postives = 70/81 (86.42%), Query Frame = 0

Query: 7  MEARLLLLMAVITLLVSGDNKATMG---VALVDHHPLSNMQEKHRKHLPSPSLPPPWSHS 66
          MEARLLLLMAVITLLVSGDNKATMG   VA +D HPLSNMQEKHRKHL   S PPP SH 
Sbjct: 1  MEARLLLLMAVITLLVSGDNKATMGAAAVAFIDQHPLSNMQEKHRKHLQLLSSPPPRSHL 60

Query: 67 FNALFASKRKVPNTWDPLHNR 85
          FNALFASKRKVPNTWDP+HNR
Sbjct: 61 FNALFASKRKVPNTWDPIHNR 81

BLAST of Clc05G22615 vs. ExPASy TrEMBL
Match: A0A5D3D9C5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G002930 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 5.4e-19
Identity = 59/72 (81.94%), Postives = 60/72 (83.33%), Query Frame = 0

Query: 7  MEARLLLLMAVITLLVSGDNKATMG--VALVDHHPLSNMQEKHRKHLPSPSLPPPWSHSF 66
          MEARLLLLMAVITLLVSG+NKATMG  VALVD HPLSNMQEKHRKHL   S PP  SH F
Sbjct: 1  MEARLLLLMAVITLLVSGNNKATMGVAVALVDQHPLSNMQEKHRKHLQLLSSPPLRSHLF 60

Query: 67 NALFASKRKVPN 77
          NALFASKRK  N
Sbjct: 61 NALFASKRKSMN 72

BLAST of Clc05G22615 vs. ExPASy TrEMBL
Match: A0A067L375 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_16070 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 8.3e-04
Identity = 33/84 (39.29%), Postives = 47/84 (55.95%), Query Frame = 0

Query: 1  MPFPLSMEARLLLLMAVITLLVSGDNKATMGVALVDHHPLSNMQEKHRKHLPSPSLPPPW 60
          M F    + ++++L+ + +LLVSG+ + TM V   D       QEKH++           
Sbjct: 1  MHFHQFKQKKIIVLILLYSLLVSGEKEETMAVTHADDKQ-PRRQEKHQR----------L 60

Query: 61 SHSFNALFASKRKVPNTWDPLHNR 85
            SF+ LF+SKRKVPN  DPLHNR
Sbjct: 61 RSSFDVLFSSKRKVPNASDPLHNR 73

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8649873.12.2e-2281.43hypothetical protein Csa_012848, partial [Cucumis sativus][more]
KAA0064426.11.1e-1881.94hypothetical protein E6C27_scaffold255G001340 [Cucumis melo var. makuwa] >TYK201... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KZW11.4e-2783.95Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G641770 PE=4 SV=1[more]
A0A5D3D9C55.4e-1981.94Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A067L3758.3e-0439.29Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_16070 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34277:SF1CLAVATA3/ESR (CLE) GENE FAMILY MEMBER MTCLE20coord: 9..84
IPR039316CLAVATA3/ESR (CLE)-related protein 25/26PANTHERPTHR34277CLAVATA3/ESR (CLE)-RELATED PROTEIN 26coord: 9..84

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc05G22615.1Clc05G22615.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045168 cell-cell signaling involved in cell fate commitment