Clc05G22270 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc05G22270
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Unknown protein
Location	ClcChr05: 30582891 .. 30583830 (+)
RNA-Seq Expression	Clc05G22270
Synteny	Clc05G22270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAGAAGACATATTTTCAAACATCCAATACAAACTTTCAACCTTTATCAAATTTACATTTGTGGAAGGGACTTGGAAACTACTTACCTCAATCGACAATCCTATAATTCTCAATCCGGAAATCCACTTCCTTGAACCAACATCAACCTTTAGAAAGCCTAGACAATAAACATAACATTTAAGTGTTAGAACTTAGTTCAAAAACGTTAATTGACACCGAGTTATTTGCCATCAGTAATATTCTTATCCGAAGTCCACCAAAAACCTTAATTAGTCACTTCGAACTAGCCAAAACTACGACCAACAAACTTTAACGAATCAAAGACTGATCTAAGACGCTTTAATCGAGTCTGAACTAGTCTGAAATATGTTCAACCTTACTGAAGCTTGATCAAATACTTAGAAATTTACCCAAACACAACAACAAAGGAGTTCCAAGAGTTCAGAATAACATTTGAATACTTAAATCCAATTCAAAATAAGAAATTAAAGCAGTTATCCTTACCGAATCTTACCGAAAAGGCAAATAATCCTTGCTGGTTGGTGTCCGAAAACGTCCAAACTTACAGATTTGGACCTTAAACGTTATGGGTACACAAATTCGAAGCCAAACAGAGTGTGGGTAACAGCCGAAAGCTTACACCCCAAGCCGAAAACGCTGCTGCAAGACACCCAGTCGTCAAAAACGTGATGCACAACCTGTTGTTCACGTTGCAGTCTCACACGAAGAAGAAACGATGTTTCTAAACTTGTTCAAACTGGGTGTTTATGTTGCAGCTGACTCCGCCGTCAAATGTGGGGCAAGAGCACATTGGTCTGAATCATCTAATGCGCCGGGACTGGTCTTCGGAGTCCGTGGTCGACCCCGCTGCTCGGGGGTGAGGTCGCCGGCGAAGAAGACCGAAGGGAGGGTTGTCGGCGGCAAAGGGGCTGAATAA

mRNA sequence

ATGCCGAAAGCTTACACCCCAAGCCGAAAACGCTGCTGCAAGACACCCAGTCGTCAAAAACGTGATGCACAACCTGTTGTTCACGTTGCAGTCTCACACGAAGAAGAAACGATGTTTCTAAACTTGTTCAAACTGGGTGTTTATGTTGCAGCTGACTCCGCCGTCAAATGTGGGGCAAGAGCACATTGGTCTGAATCATCTAATGCGCCGGGACTGGTCTTCGGAGTCCGTGGTCGACCCCGCTGCTCGGGGGTGAGGTCGCCGGCGAAGAAGACCGAAGGGAGGGTTGTCGGCGGCAAAGGGGCTGAATAA

Coding sequence (CDS)

ATGCCGAAAGCTTACACCCCAAGCCGAAAACGCTGCTGCAAGACACCCAGTCGTCAAAAACGTGATGCACAACCTGTTGTTCACGTTGCAGTCTCACACGAAGAAGAAACGATGTTTCTAAACTTGTTCAAACTGGGTGTTTATGTTGCAGCTGACTCCGCCGTCAAATGTGGGGCAAGAGCACATTGGTCTGAATCATCTAATGCGCCGGGACTGGTCTTCGGAGTCCGTGGTCGACCCCGCTGCTCGGGGGTGAGGTCGCCGGCGAAGAAGACCGAAGGGAGGGTTGTCGGCGGCAAAGGGGCTGAATAA

Protein sequence

MPKAYTPSRKRCCKTPSRQKRDAQPVVHVAVSHEEETMFLNLFKLGVYVAADSAVKCGARAHWSESSNAPGLVFGVRGRPRCSGVRSPAKKTEGRVVGGKGAE

Homology

The following BLAST results are available for this feature:

BLAST of Clc05G22270 vs.


Match Name	E-value	Identity	Description

BLAST of Clc05G22270 vs.


Match Name	E-value	Identity	Description

BLAST of Clc05G22270 vs.


Match Name	E-value	Identity	Description

BLAST of Clc05G22270 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc05G22270.1	Clc05G22270.1	mRNA