Clc05G21050 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc05G21050
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	protein RADIALIS-like 3
Location	ClcChr05: 29655709 .. 29657160 (-)
RNA-Seq Expression	Clc05G21050
Synteny	Clc05G21050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGCAAATAAGGTCGAACCCACTTGCCACATATTCGCTTCAGCTTCTCTAGTATTTAAACATCAGAAATGGCAGCAAAAACTCAACCACTGATCTGAAATTGATAGTGTTATAGAGACGAGGAGTTGATATTGCGATGGGGTCTGGATCGAATTGGACGGCAAAGCAGAACAAAGTGTTTGAAAATGCTTTAGCCATCTACGACAAAGACACGCCGGAGCGGTGGCACAACCTCGCCAGAGCCGTCGGCGGCAAGACGGTGGAGGAAGTCAAACGCCACTACGAAAGGCTCGTTGAAGATGTCAACAAGATCGAGACCGGCCAAGTTCCTTTCCCTAATTACAGAAGATCCGGACCTGCCGGCAGAGGATTTTGCTTTGTTGACGAAGAACAACGGTAATTGAAACGCCCCCACCTTTTTGTTTATTTTTTCCTTTTCCAATTATTATTTTTTGGGTAATGTATTTTTAAAATCCACCTTTGATTATCGTTTGTTTTCTTGATTGAAACAACAAAATTAGCAGTTTAGCACCCAAAATTTTGTTCTCTGTTTTCTAAATGTAGCCAAAGTTTTCCGGAGTATTTCAAGGAAAAACTAATAAAGAAAGTATATAAACTTGTTTATATTGTTTTTTAGTCTAAAAAACACAAATGAAATCAATGCTAGGATTACGGTATTAAATTCAATTGACCTGTCCGTATTTTCAACCATGTTTTCATGAAATTCAATCGACATTTTCATAATATTTTGAGAAAATCCGATGCGAAAAAGTATAAAACAAAATGTCATCAATTTGAGTATATTATAAATGCTTAAAAAACCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACTTTTCAAAATTATCTATTCACTCCACCATTTTATTGATATTTTTATCTCCTGGTCTATAAAATTGAGACATTGACATCTTAAATTTTGACTATTATTTACAAATCTTCATTCATAATGGTTGATTTTCTAAACTGCTTAAGAGATGATTATTTTCTAACCTCCAACTTTTTTAGAAAGTTAAATAGTGTAAATATCACGTAGAACTACATATATTTTGGTAAATTTGGAGCAAAAGTTAGTGGATTAAGCATTAGGTTAATTAAAATCCATGGATTATTTATTTAAATTGTAAATTATAATATAATTTAATCTGAGTAGTTTTAACAAGAATCTGTTGTGATTAATGCAGGATGAGGAGTCTACAATTGCACTGAAGTACGAATGTAGGAAGACAAAAGTTCTATCTTTCCATTAACTATTTTCAACTAAAACTTTCAAGGTCCAACCACCAAGTGTTAATGAAATATGAAGGGCAAATGTAGCTAGTTTTCTTCACCCATCTTTATTGTAACTTATAGTTTTTATCTTTTATCATTAACTGTTGTGCCAATTTGTTTTATATTGAATAAATACTCTTAATCCAACC

mRNA sequence

AGGCAAATAAGGTCGAACCCACTTGCCACATATTCGCTTCAGCTTCTCTAGTATTTAAACATCAGAAATGGCAGCAAAAACTCAACCACTGATCTGAAATTGATAGTGTTATAGAGACGAGGAGTTGATATTGCGATGGGGTCTGGATCGAATTGGACGGCAAAGCAGAACAAAGTGTTTGAAAATGCTTTAGCCATCTACGACAAAGACACGCCGGAGCGGTGGCACAACCTCGCCAGAGCCGTCGGCGGCAAGACGGTGGAGGAAGTCAAACGCCACTACGAAAGGCTCGTTGAAGATGTCAACAAGATCGAGACCGGCCAAGTTCCTTTCCCTAATTACAGAAGATCCGGACCTGCCGGCAGAGGATTTTGCTTTGTTGACGAAGAACAACGGATGAGGAGTCTACAATTGCACTGAAGTACGAATGTAGGAAGACAAAAGTTCTATCTTTCCATTAACTATTTTCAACTAAAACTTTCAAGGTCCAACCACCAAGTGTTAATGAAATATGAAGGGCAAATGTAGCTAGTTTTCTTCACCCATCTTTATTGTAACTTATAGTTTTTATCTTTTATCATTAACTGTTGTGCCAATTTGTTTTATATTGAATAAATACTCTTAATCCAACC

Coding sequence (CDS)

ATGGGGTCTGGATCGAATTGGACGGCAAAGCAGAACAAAGTGTTTGAAAATGCTTTAGCCATCTACGACAAAGACACGCCGGAGCGGTGGCACAACCTCGCCAGAGCCGTCGGCGGCAAGACGGTGGAGGAAGTCAAACGCCACTACGAAAGGCTCGTTGAAGATGTCAACAAGATCGAGACCGGCCAAGTTCCTTTCCCTAATTACAGAAGATCCGGACCTGCCGGCAGAGGATTTTGCTTTGTTGACGAAGAACAACGGATGAGGAGTCTACAATTGCACTGA

Protein sequence

MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQRMRSLQLH

Homology

[Close]

BLAST of Clc05G21050 vs. NCBI nr
Match: XP_038905673.1 (protein RADIALIS-like 3 [Benincasa hispida])

HSP 1 Score: 192.6 bits (488), Expect = 1.6e-45
Identity = 90/94 (95.74%), Postives = 92/94 (97.87%), Query Frame = 0


Query: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIE 60
          MGSGS+WTAKQNKVFENALAIYDKDTPERWHNLARAVGGKT EEVKRHYERLVEDVNKIE
Sbjct: 1  MGSGSHWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIE 60

Query: 61 TGQVPFPNYRRSGPAGRGFCFVDEEQRMRSLQLH 95
          TGQVPFPNYRRSGPA RGFCFVDEEQRMRSL+LH
Sbjct: 61 TGQVPFPNYRRSGPAVRGFCFVDEEQRMRSLRLH 94

[Close]

BLAST of Clc05G21050 vs. NCBI nr
Match: XP_004147867.1 (protein RADIALIS-like 3 [Cucumis sativus] >KGN59962.1 hypothetical protein Csa_001999 [Cucumis sativus])

HSP 1 Score: 181.4 bits (459), Expect = 3.6e-42
Identity = 86/94 (91.49%), Postives = 89/94 (94.68%), Query Frame = 0


Query: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIE 60
          MGSGSNWTAKQNKVFENALAIYDKDTPERW NLARAVGGKT EEVKRHYERLVEDVNKIE
Sbjct: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIE 60

Query: 61 TGQVPFPNYRRSGPAGRGFCFVDEEQRMRSLQLH 95
          TGQVPFPNYRRS PA RGF F+D+EQRMRSLQL+
Sbjct: 61 TGQVPFPNYRRSVPAARGFYFLDQEQRMRSLQLN 94

[Close]

BLAST of Clc05G21050 vs. NCBI nr
Match: XP_008465612.1 (PREDICTED: protein RADIALIS-like 3 [Cucumis melo] >KAA0041605.1 protein RADIALIS-like 3 [Cucumis melo var. makuwa] >TYK19652.1 protein RADIALIS-like 3 [Cucumis melo var. makuwa])

HSP 1 Score: 181.0 bits (458), Expect = 4.7e-42
Identity = 83/87 (95.40%), Postives = 85/87 (97.70%), Query Frame = 0


Query: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIE 60
          MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKT EEVKRHYERLVEDVNKIE
Sbjct: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIE 60

Query: 61 TGQVPFPNYRRSGPAGRGFCFVDEEQR 88
          TGQVPFPNYRRSGPA RGFCF+D+EQR
Sbjct: 61 TGQVPFPNYRRSGPAARGFCFLDQEQR 87

[Close]

BLAST of Clc05G21050 vs. NCBI nr
Match: XP_022138113.1 (protein RADIALIS-like 3 [Momordica charantia])

HSP 1 Score: 177.2 bits (448), Expect = 6.7e-41
Identity = 82/95 (86.32%), Postives = 89/95 (93.68%), Query Frame = 0


Query: 1   MGS-GSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKI 60
           MGS GSNWTAKQNKVFENALA+YDKDTP+RWHNLARAVGGKT EEVKRHYERLV+DVNKI
Sbjct: 26  MGSGGSNWTAKQNKVFENALAVYDKDTPDRWHNLARAVGGKTAEEVKRHYERLVDDVNKI 85

Query: 61  ETGQVPFPNYRRSGPAGRGFCFVDEEQRMRSLQLH 95
           ETGQVPFPNYR+S    RGFCF+DEE+RMRSL+LH
Sbjct: 86  ETGQVPFPNYRKSAHGPRGFCFIDEEKRMRSLRLH 120

[Close]

BLAST of Clc05G21050 vs. NCBI nr
Match: XP_022941099.1 (protein RADIALIS-like 3 [Cucurbita moschata] >XP_023525029.1 protein RADIALIS-like 3 [Cucurbita pepo subsp. pepo] >KAG6608538.1 Protein RADIALIS-like 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037861.1 Protein RADIALIS-like 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 169.9 bits (429), Expect = 1.1e-38
Identity = 80/94 (85.11%), Postives = 85/94 (90.43%), Query Frame = 0


Query: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIE 60
          M SGS WTAKQNK+FENALAIYD+DTPERW+NLARAVGGKT EEVKRHYE LVEDVNKIE
Sbjct: 1  MASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIE 60

Query: 61 TGQVPFPNYRRSGPAGRGFCFVDEEQRMRSLQLH 95
          +GQVPFP Y +S PAG GF FVDEEQRMRSLQLH
Sbjct: 61 SGQVPFPAYTKSEPAGTGFRFVDEEQRMRSLQLH 94

[Close]

BLAST of Clc05G21050 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 6.8e-28
Identity = 58/91 (63.74%), Postives = 68/91 (74.73%), Query Frame = 0


Query: 3  SGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETG 62
          S  +WTAKQNK FE ALA YD+DTP RW N+A+ VGGKT EEVKRHYE LV+D+N IE G
Sbjct: 10 SSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDINSIENG 69

Query: 63 QVPFPNYRRSGPAGRGFCFVDEEQRMRSLQL 94
           VPFPNYR SG    G     EE+RMR+++L
Sbjct: 70 HVPFPNYRTSGGCTNG-RLSQEEKRMRNMRL 99

[Close]

BLAST of Clc05G21050 vs. ExPASy Swiss-Prot
Match: Q9SIJ5 (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.7e-26
Identity = 59/93 (63.44%), Postives = 72/93 (77.42%), Query Frame = 0


Query: 2   GSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIET 61
           GSGS WT KQNK FE ALA+YD+DTP+RWHN+ARAVGGKT EE KR Y+ LV D+  IE 
Sbjct: 10  GSGS-WTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIESIEN 69

Query: 62  GQVPFPNYR-RSGPAGRGFCFVDEEQRMRSLQL 94
           G VPFP+Y+  +G + RG    DEE+RMRS++L
Sbjct: 70  GHVPFPDYKTTTGNSNRG-RLRDEEKRMRSMKL 100

[Close]

BLAST of Clc05G21050 vs. ExPASy Swiss-Prot
Match: Q58FS3 (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 4.1e-25
Identity = 54/92 (58.70%), Postives = 71/92 (77.17%), Query Frame = 0


Query: 2  GSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIET 61
          GSG  W+AK+NK FE ALA+YDKDTP+RW N+ARAV G+T EEVK+HYE LVED+  IE+
Sbjct: 6  GSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIES 65

Query: 62 GQVPFPNYRRSGPAGRGFCFVDEEQRMRSLQL 94
          G+VPFPNYR +G   +      +E+R R+L++
Sbjct: 66 GKVPFPNYRTTGGNMK-----TDEKRFRNLKI 92

[Close]

BLAST of Clc05G21050 vs. ExPASy Swiss-Prot
Match: Q6NNN0 (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.6e-24
Identity = 48/73 (65.75%), Postives = 61/73 (83.56%), Query Frame = 0


Query: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIE 60
          M S ++WT K+NK+FE ALA YD+DTP+RWHN+ARAVGGK+ EEV+RHYE L+ DVN IE
Sbjct: 6  MSSSASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLIRDVNDIE 65

Query: 61 TGQVPFPNYRRSG 74
          +G+ P PNYR +G
Sbjct: 66 SGRYPHPNYRSNG 78

[Close]

BLAST of Clc05G21050 vs. ExPASy Swiss-Prot
Match: Q1A173 (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.6e-24
Identity = 53/89 (59.55%), Postives = 68/89 (76.40%), Query Frame = 0


Query: 5  SNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQV 64
          S WT  QNK+FE ALA+YDKDTP+RWHN+A+AVGGKTVEEVKRHY+ LVED+  IETG+V
Sbjct: 10 SPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLINIETGRV 69

Query: 65 PFPNYRRSGPAGRGFCFVDEEQRMRSLQL 94
          P PNY+      R     D  ++M++L++
Sbjct: 70 PLPNYKTFESNSRSINDFD-TRKMKNLKI 97

[Close]

BLAST of Clc05G21050 vs. ExPASy TrEMBL
Match: A0A0A0LGK8 (SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G857030 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.7e-42
Identity = 86/94 (91.49%), Postives = 89/94 (94.68%), Query Frame = 0


Query: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIE 60
          MGSGSNWTAKQNKVFENALAIYDKDTPERW NLARAVGGKT EEVKRHYERLVEDVNKIE
Sbjct: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIE 60

Query: 61 TGQVPFPNYRRSGPAGRGFCFVDEEQRMRSLQLH 95
          TGQVPFPNYRRS PA RGF F+D+EQRMRSLQL+
Sbjct: 61 TGQVPFPNYRRSVPAARGFYFLDQEQRMRSLQLN 94

[Close]

BLAST of Clc05G21050 vs. ExPASy TrEMBL
Match: A0A5D3D7Z0 (Protein RADIALIS-like 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G00440 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 2.3e-42
Identity = 83/87 (95.40%), Postives = 85/87 (97.70%), Query Frame = 0


Query: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIE 60
          MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKT EEVKRHYERLVEDVNKIE
Sbjct: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIE 60

Query: 61 TGQVPFPNYRRSGPAGRGFCFVDEEQR 88
          TGQVPFPNYRRSGPA RGFCF+D+EQR
Sbjct: 61 TGQVPFPNYRRSGPAARGFCFLDQEQR 87

[Close]

BLAST of Clc05G21050 vs. ExPASy TrEMBL
Match: A0A1S3CPA0 (protein RADIALIS-like 3 OS=Cucumis melo OX=3656 GN=LOC103503253 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 2.3e-42
Identity = 83/87 (95.40%), Postives = 85/87 (97.70%), Query Frame = 0


Query: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIE 60
          MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKT EEVKRHYERLVEDVNKIE
Sbjct: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIE 60

Query: 61 TGQVPFPNYRRSGPAGRGFCFVDEEQR 88
          TGQVPFPNYRRSGPA RGFCF+D+EQR
Sbjct: 61 TGQVPFPNYRRSGPAARGFCFLDQEQR 87

[Close]

BLAST of Clc05G21050 vs. ExPASy TrEMBL
Match: A0A6J1CC55 (protein RADIALIS-like 3 OS=Momordica charantia OX=3673 GN=LOC111009358 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 3.3e-41
Identity = 82/95 (86.32%), Postives = 89/95 (93.68%), Query Frame = 0


Query: 1   MGS-GSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKI 60
           MGS GSNWTAKQNKVFENALA+YDKDTP+RWHNLARAVGGKT EEVKRHYERLV+DVNKI
Sbjct: 26  MGSGGSNWTAKQNKVFENALAVYDKDTPDRWHNLARAVGGKTAEEVKRHYERLVDDVNKI 85

Query: 61  ETGQVPFPNYRRSGPAGRGFCFVDEEQRMRSLQLH 95
           ETGQVPFPNYR+S    RGFCF+DEE+RMRSL+LH
Sbjct: 86  ETGQVPFPNYRKSAHGPRGFCFIDEEKRMRSLRLH 120

[Close]

BLAST of Clc05G21050 vs. ExPASy TrEMBL
Match: A0A6J1FM85 (protein RADIALIS-like 3 OS=Cucurbita moschata OX=3662 GN=LOC111446496 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 5.2e-39
Identity = 80/94 (85.11%), Postives = 85/94 (90.43%), Query Frame = 0


Query: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIE 60
          M SGS WTAKQNK+FENALAIYD+DTPERW+NLARAVGGKT EEVKRHYE LVEDVNKIE
Sbjct: 1  MASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIE 60

Query: 61 TGQVPFPNYRRSGPAGRGFCFVDEEQRMRSLQLH 95
          +GQVPFP Y +S PAG GF FVDEEQRMRSLQLH
Sbjct: 61 SGQVPFPAYTKSEPAGTGFRFVDEEQRMRSLQLH 94

[Close]

BLAST of Clc05G21050 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 124.4 bits (311), Expect = 4.8e-29
Identity = 58/91 (63.74%), Postives = 68/91 (74.73%), Query Frame = 0


Query: 3  SGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETG 62
          S  +WTAKQNK FE ALA YD+DTP RW N+A+ VGGKT EEVKRHYE LV+D+N IE G
Sbjct: 10 SSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDINSIENG 69

Query: 63 QVPFPNYRRSGPAGRGFCFVDEEQRMRSLQL 94
           VPFPNYR SG    G     EE+RMR+++L
Sbjct: 70 HVPFPNYRTSGGCTNG-RLSQEEKRMRNMRL 99

[Close]

BLAST of Clc05G21050 vs. TAIR 10
Match: AT2G21650.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 119.8 bits (299), Expect = 1.2e-27
Identity = 59/93 (63.44%), Postives = 72/93 (77.42%), Query Frame = 0


Query: 2   GSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIET 61
           GSGS WT KQNK FE ALA+YD+DTP+RWHN+ARAVGGKT EE KR Y+ LV D+  IE 
Sbjct: 10  GSGS-WTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIESIEN 69

Query: 62  GQVPFPNYR-RSGPAGRGFCFVDEEQRMRSLQL 94
           G VPFP+Y+  +G + RG    DEE+RMRS++L
Sbjct: 70  GHVPFPDYKTTTGNSNRG-RLRDEEKRMRSMKL 100

[Close]

BLAST of Clc05G21050 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 113.2 bits (282), Expect = 1.1e-25
Identity = 53/89 (59.55%), Postives = 68/89 (76.40%), Query Frame = 0


Query: 5  SNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQV 64
          S WT  QNK+FE ALA+YDKDTP+RWHN+A+AVGGKTVEEVKRHY+ LVED+  IETG+V
Sbjct: 10 SPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLINIETGRV 69

Query: 65 PFPNYRRSGPAGRGFCFVDEEQRMRSLQL 94
          P PNY+      R     D  ++M++L++
Sbjct: 70 PLPNYKTFESNSRSINDFD-TRKMKNLKI 97

[Close]

BLAST of Clc05G21050 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 111.7 bits (278), Expect = 3.2e-25
Identity = 49/66 (74.24%), Postives = 58/66 (87.88%), Query Frame = 0


Query: 5  SNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQV 64
          S WT  QNK+FE ALA+YDKDTP+RWHN+A+AVGGKTVEEVKRHY+ LVED+  IETG+V
Sbjct: 10 SPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLINIETGRV 69

Query: 65 PFPNYR 71
          P PNY+
Sbjct: 70 PLPNYK 75

[Close]

BLAST of Clc05G21050 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 102.8 bits (255), Expect = 1.5e-22
Identity = 45/70 (64.29%), Postives = 56/70 (80.00%), Query Frame = 0


Query: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIE 60
          M S S+WT+KQNK+FE ALA+YDKDTP+RW N+A+AVG K+ EEVKRHY+ LVED+  IE
Sbjct: 6  MSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVEDLMNIE 65

Query: 61 TGQVPFPNYR 71
             VP P Y+
Sbjct: 66 QDLVPLPKYK 75

The following BLAST results are available for this feature:

BLAST of Clc05G21050 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905673.1	1.6e-45	95.74	protein RADIALIS-like 3 [Benincasa hispida]	[more]
XP_004147867.1	3.6e-42	91.49	protein RADIALIS-like 3 [Cucumis sativus] >KGN59962.1 hypothetical protein Csa_0...	[more]
XP_008465612.1	4.7e-42	95.40	PREDICTED: protein RADIALIS-like 3 [Cucumis melo] >KAA0041605.1 protein RADIALIS...	[more]
XP_022138113.1	6.7e-41	86.32	protein RADIALIS-like 3 [Momordica charantia]	[more]
XP_022941099.1	1.1e-38	85.11	protein RADIALIS-like 3 [Cucurbita moschata] >XP_023525029.1 protein RADIALIS-li...	[more]

BLAST of Clc05G21050 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JVB8	6.8e-28	63.74	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
Q9SIJ5	1.7e-26	63.44	Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1	[more]
Q58FS3	4.1e-25	58.70	Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1	[more]
Q6NNN0	1.6e-24	65.75	Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1	[more]
Q1A173	1.6e-24	59.55	Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1	[more]

BLAST of Clc05G21050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LGK8	1.7e-42	91.49	SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G857030 PE=4 S...	[more]
A0A5D3D7Z0	2.3e-42	95.40	Protein RADIALIS-like 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CPA0	2.3e-42	95.40	protein RADIALIS-like 3 OS=Cucumis melo OX=3656 GN=LOC103503253 PE=4 SV=1	[more]
A0A6J1CC55	3.3e-41	86.32	protein RADIALIS-like 3 OS=Momordica charantia OX=3673 GN=LOC111009358 PE=4 SV=1	[more]
A0A6J1FM85	5.2e-39	85.11	protein RADIALIS-like 3 OS=Cucurbita moschata OX=3662 GN=LOC111446496 PE=4 SV=1	[more]

BLAST of Clc05G21050 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G39250.1	4.8e-29	63.74	RAD-like 1	[more]
AT2G21650.1	1.2e-27	63.44	Homeodomain-like superfamily protein	[more]
AT1G75250.2	1.1e-25	59.55	RAD-like 6	[more]
AT1G75250.1	3.2e-25	74.24	RAD-like 6	[more]
AT1G19510.1	1.5e-22	64.29	RAD-like 5	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 3..55 e-value: 4.5E-7 score: 39.5
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 5..53 score: 6.016631
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 6..53 e-value: 1.77434E-6 score: 39.0958
None	No IPR available	GENE3D	1.10.10.60		coord: 1..66 e-value: 6.3E-24 score: 85.5
None	No IPR available	PANTHER	PTHR43952:SF52	MYB FAMILY TRANSCRIPTION FACTOR	coord: 1..94
IPR044636	Transcription factor RADIALIS-like	PANTHER	PTHR43952	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 1..94
IPR017884	SANT domain	PROSITE	PS51293	SANT	coord: 2..57 score: 10.746236
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 6..60

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc05G21050.1	Clc05G21050.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity