Clc05G20260 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc05G20260
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Unknown protein
Location	ClcChr05: 29034949 .. 29035587 (-)
RNA-Seq Expression	Clc05G20260
Synteny	Clc05G20260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATTTTGCTCTGACTACATGCTCTGCAAATCTTCGCACATAGAAACCCCTTTGAAAATCTCAATCCCTCTTTTTGAACCAAAACATAAATTTCAAATTTCTATATATAAATCACAATAAACGACACCCATTATAGCATTCCCCATTTCCCCAGAGAATTTTTTACACAAATATGCAAAGGCCTAAAACCACTGAAGCACTTATCACTGCTTCTTCTTCCAACTCTCTTAACTTCTCTTCCATGAAGCTCTTTCACCGAATCCGTAAGCTACTCGTGCGCTTCGTCTTCTCCCTCCCGTCTCGAGTGTCGTCGTCGTCATCGTCAAGACGAAGAACAAGCTACGACAAGTCGTTTGATCCACCAAAAACATCATGCAGCTCCTATTACTCCTCCCACTCCCACTACGACGAGGCCATTGCCGATTGTATTGAGTTCTTCAACAAGTCATCGCAAGATGGGGTTTTTGAAGCTCAAAAACCAATCACCTTGGTATGATATATATTCAGAATACACAAACAAAATACCCCACATATTCGAGTGGACAATATCAAATCATTATAGAAATATGAAGAGAGTCTATTATTCGTTGGAGAAAATTTGGTTTGTCATTTGATTTGTATGTGTCTTTTGTTGTTGTA

mRNA sequence

AAATTTTGCTCTGACTACATGCTCTGCAAATCTTCGCACATAGAAACCCCTTTGAAAATCTCAATCCCTCTTTTTGAACCAAAACATAAATTTCAAATTTCTATATATAAATCACAATAAACGACACCCATTATAGCATTCCCCATTTCCCCAGAGAATTTTTTACACAAATATGCAAAGGCCTAAAACCACTGAAGCACTTATCACTGCTTCTTCTTCCAACTCTCTTAACTTCTCTTCCATGAAGCTCTTTCACCGAATCCGTAAGCTACTCGTGCGCTTCGTCTTCTCCCTCCCGTCTCGAGTGTCGTCGTCGTCATCGTCAAGACGAAGAACAAGCTACGACAAGTCGTTTGATCCACCAAAAACATCATGCAGCTCCTATTACTCCTCCCACTCCCACTACGACGAGGCCATTGCCGATTGTATTGAGTTCTTCAACAAGTCATCGCAAGATGGGGTTTTTGAAGCTCAAAAACCAATCACCTTGGTATGATATATATTCAGAATACACAAACAAAATACCCCACATATTCGAGTGGACAATATCAAATCATTATAGAAATATGAAGAGAGTCTATTATTCGTTGGAGAAAATTTGGTTTGTCATTTGATTTGTATGTGTCTTTTGTTGTTGTA

Coding sequence (CDS)

ATGCAAAGGCCTAAAACCACTGAAGCACTTATCACTGCTTCTTCTTCCAACTCTCTTAACTTCTCTTCCATGAAGCTCTTTCACCGAATCCGTAAGCTACTCGTGCGCTTCGTCTTCTCCCTCCCGTCTCGAGTGTCGTCGTCGTCATCGTCAAGACGAAGAACAAGCTACGACAAGTCGTTTGATCCACCAAAAACATCATGCAGCTCCTATTACTCCTCCCACTCCCACTACGACGAGGCCATTGCCGATTGTATTGAGTTCTTCAACAAGTCATCGCAAGATGGGGTTTTTGAAGCTCAAAAACCAATCACCTTGGTATGA

Protein sequence

MQRPKTTEALITASSSNSLNFSSMKLFHRIRKLLVRFVFSLPSRVSSSSSSRRRTSYDKSFDPPKTSCSSYYSSHSHYDEAIADCIEFFNKSSQDGVFEAQKPITLV

Homology

[Close]

BLAST of Clc05G20260 vs. NCBI nr
Match: KGN60030.1 (hypothetical protein Csa_001336 [Cucumis sativus])

HSP 1 Score: 171.8 bits (434), Expect = 3.2e-39
Identity = 95/110 (86.36%), Postives = 98/110 (89.09%), Query Frame = 0


Query: 1   MQRPKTTEALITA-----SSSNSLNFSSMKLFHRIRKLLVRFVFSLPSRVSSSSSSRRRT 60
           MQRPKT+ ALITA     SSSNSLNFSSMKLF RIRK+LVRFVFS+PSRV  SSSSRRRT
Sbjct: 1   MQRPKTSAALITAVSSSSSSSNSLNFSSMKLFQRIRKMLVRFVFSIPSRV--SSSSRRRT 60

Query: 61  SYDKSFDPPKTSCSSYYSSHSHYDEAIADCIEFFNKSSQDGVFEAQKPIT 106
           SYDKSFDPPKTSCSSYYSSHSHYDEAIADCIEFFNKSSQD  FE QKPIT
Sbjct: 61  SYDKSFDPPKTSCSSYYSSHSHYDEAIADCIEFFNKSSQDRGFEDQKPIT 108

[Close]

BLAST of Clc05G20260 vs. NCBI nr
Match: KAG7024157.1 (hypothetical protein SDJN02_12970, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 123.2 bits (308), Expect = 1.3e-24
Identity = 63/72 (87.50%), Postives = 67/72 (93.06%), Query Frame = 0


Query: 24 MKLFHRIRKLLVRFVFSLPSRVSSSSSSRRRTSYDKSFDPPKTSCSSYYSSHSHYDEAIA 83
          MKLFHRIRK+LVRFVFSLPSRV    SSR+RT+YDK +DPPKTSCSSYYSSHSHYDEAIA
Sbjct: 1  MKLFHRIRKILVRFVFSLPSRV----SSRQRTTYDKLYDPPKTSCSSYYSSHSHYDEAIA 60

Query: 84 DCIEFFNKSSQD 96
          DCIEFFNKSSQD
Sbjct: 61 DCIEFFNKSSQD 68

[Close]

BLAST of Clc05G20260 vs. NCBI nr
Match: PON93881.1 (hypothetical protein TorRG33x02_102710 [Trema orientale])

HSP 1 Score: 119.8 bits (299), Expect = 1.5e-23
Identity = 62/95 (65.26%), Postives = 75/95 (78.95%), Query Frame = 0


Query: 8   EALITASSSNSLNFSSMKLFHRIRKLLVRFVFSLPSRVSSSSSSRRRTSYDKSFDPPKTS 67
           EAL   S   +LN S+MK+F+R RKLL+R + SLPSR  SSSSS  + + D  FDPPKTS
Sbjct: 34  EALQYKSPQANLNLSAMKIFNRFRKLLMRLILSLPSRGKSSSSSAMQRNGDVRFDPPKTS 93

Query: 68  CSSYYSSHSHYDEAIADCIEFFNKSSQDGVFEAQK 103
           CSSYYSSHSHY+EAIADCIEFFNKSSQ+G+ + +K
Sbjct: 94  CSSYYSSHSHYNEAIADCIEFFNKSSQEGILDGRK 128

[Close]

BLAST of Clc05G20260 vs. NCBI nr
Match: XP_024925739.1 (uncharacterized protein LOC107408298 [Ziziphus jujuba])

HSP 1 Score: 117.9 bits (294), Expect = 5.5e-23
Identity = 63/105 (60.00%), Postives = 78/105 (74.29%), Query Frame = 0


Query: 6   TTEALITASSSNSLNFSSMKLFHRIRKLLVRFVFSLPSRVSSSSSSR--------RRTSY 65
           TT    T +++  LN S+MKLF+R RK+L+R +FSLP R S SSSS         R+ + 
Sbjct: 30  TTTGTSTTTTTTKLNLSAMKLFNRFRKILMRLIFSLPPRGSCSSSSSSATPGMTPRQRNC 89

Query: 66  DKSFDPPKTSCSSYYSSHSHYDEAIADCIEFFNKSSQDGVFEAQK 103
           D+SFDPPKTSCSSYYSSHSHY+EAIADCIEFFNKSSQ+G  + +K
Sbjct: 90  DRSFDPPKTSCSSYYSSHSHYNEAIADCIEFFNKSSQEGGLDGRK 134

[Close]

BLAST of Clc05G20260 vs. NCBI nr
Match: XP_007017791.2 (PREDICTED: uncharacterized protein LOC18591544 [Theobroma cacao])

HSP 1 Score: 115.9 bits (289), Expect = 2.1e-22
Identity = 62/94 (65.96%), Postives = 76/94 (80.85%), Query Frame = 0


Query: 16  SNSLNFSSMKLFHRIRKLLVRFVFSLPSRVSSSSSSR--RRTSYDKSFDPPKTSCSSYYS 75
           S  LNFS+MKLF+R RK+L+R +FSLPS  SS +SS   ++T+ D+ FDPPKTSCSSYYS
Sbjct: 33  SPKLNFSAMKLFNRFRKILMRLIFSLPSGGSSGTSSMAPKQTNCDR-FDPPKTSCSSYYS 92

Query: 76  SHSHYDEAIADCIEFFNKSSQDGVFEAQKPITLV 108
           SHSHY EAIADCIEFFNKSSQ+G+ + +K   LV
Sbjct: 93  SHSHYTEAIADCIEFFNKSSQEGIMDGRKSDVLV 125

[Close]

BLAST of Clc05G20260 vs. ExPASy TrEMBL
Match: A0A0A0LDK4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G872120 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.6e-39
Identity = 95/110 (86.36%), Postives = 98/110 (89.09%), Query Frame = 0


Query: 1   MQRPKTTEALITA-----SSSNSLNFSSMKLFHRIRKLLVRFVFSLPSRVSSSSSSRRRT 60
           MQRPKT+ ALITA     SSSNSLNFSSMKLF RIRK+LVRFVFS+PSRV  SSSSRRRT
Sbjct: 1   MQRPKTSAALITAVSSSSSSSNSLNFSSMKLFQRIRKMLVRFVFSIPSRV--SSSSRRRT 60

Query: 61  SYDKSFDPPKTSCSSYYSSHSHYDEAIADCIEFFNKSSQDGVFEAQKPIT 106
           SYDKSFDPPKTSCSSYYSSHSHYDEAIADCIEFFNKSSQD  FE QKPIT
Sbjct: 61  SYDKSFDPPKTSCSSYYSSHSHYDEAIADCIEFFNKSSQDRGFEDQKPIT 108

[Close]

BLAST of Clc05G20260 vs. ExPASy TrEMBL
Match: A0A2P5F7X5 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_102710 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 7.0e-24
Identity = 62/95 (65.26%), Postives = 75/95 (78.95%), Query Frame = 0


Query: 8   EALITASSSNSLNFSSMKLFHRIRKLLVRFVFSLPSRVSSSSSSRRRTSYDKSFDPPKTS 67
           EAL   S   +LN S+MK+F+R RKLL+R + SLPSR  SSSSS  + + D  FDPPKTS
Sbjct: 34  EALQYKSPQANLNLSAMKIFNRFRKLLMRLILSLPSRGKSSSSSAMQRNGDVRFDPPKTS 93

Query: 68  CSSYYSSHSHYDEAIADCIEFFNKSSQDGVFEAQK 103
           CSSYYSSHSHY+EAIADCIEFFNKSSQ+G+ + +K
Sbjct: 94  CSSYYSSHSHYNEAIADCIEFFNKSSQEGILDGRK 128

[Close]

BLAST of Clc05G20260 vs. ExPASy TrEMBL
Match: A0A6P6FUZ0 (uncharacterized protein LOC107408298 OS=Ziziphus jujuba OX=326968 GN=LOC107408298 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.7e-23
Identity = 63/105 (60.00%), Postives = 78/105 (74.29%), Query Frame = 0


Query: 6   TTEALITASSSNSLNFSSMKLFHRIRKLLVRFVFSLPSRVSSSSSSR--------RRTSY 65
           TT    T +++  LN S+MKLF+R RK+L+R +FSLP R S SSSS         R+ + 
Sbjct: 30  TTTGTSTTTTTTKLNLSAMKLFNRFRKILMRLIFSLPPRGSCSSSSSSATPGMTPRQRNC 89

Query: 66  DKSFDPPKTSCSSYYSSHSHYDEAIADCIEFFNKSSQDGVFEAQK 103
           D+SFDPPKTSCSSYYSSHSHY+EAIADCIEFFNKSSQ+G  + +K
Sbjct: 90  DRSFDPPKTSCSSYYSSHSHYNEAIADCIEFFNKSSQEGGLDGRK 134

[Close]

BLAST of Clc05G20260 vs. ExPASy TrEMBL
Match: A0A6J1ADC8 (uncharacterized protein LOC110417084 OS=Herrania umbratica OX=108875 GN=LOC110417084 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.0e-22
Identity = 62/94 (65.96%), Postives = 76/94 (80.85%), Query Frame = 0


Query: 16  SNSLNFSSMKLFHRIRKLLVRFVFSLPSRVSSSSSS--RRRTSYDKSFDPPKTSCSSYYS 75
           S  LNFS+MKLF+R RK+L+R +FSLPS  SS +SS   ++T+ D+ FDPPKTSCSSYYS
Sbjct: 33  SPKLNFSAMKLFNRFRKILMRLIFSLPSGGSSGTSSMAAKQTNCDR-FDPPKTSCSSYYS 92

Query: 76  SHSHYDEAIADCIEFFNKSSQDGVFEAQKPITLV 108
           SHSHY EAIADCIEFFNKSSQ+G+ + +K   LV
Sbjct: 93  SHSHYTEAIADCIEFFNKSSQEGIMDGRKSDVLV 125

[Close]

BLAST of Clc05G20260 vs. ExPASy TrEMBL
Match: A0A061FD82 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_034216 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.0e-22
Identity = 62/94 (65.96%), Postives = 76/94 (80.85%), Query Frame = 0


Query: 16  SNSLNFSSMKLFHRIRKLLVRFVFSLPSRVSSSSSSR--RRTSYDKSFDPPKTSCSSYYS 75
           S  LNFS+MKLF+R RK+L+R +FSLPS  SS +SS   ++T+ D+ FDPPKTSCSSYYS
Sbjct: 60  SPKLNFSAMKLFNRFRKILMRLIFSLPSGGSSGTSSMAPKQTNCDR-FDPPKTSCSSYYS 119

Query: 76  SHSHYDEAIADCIEFFNKSSQDGVFEAQKPITLV 108
           SHSHY EAIADCIEFFNKSSQ+G+ + +K   LV
Sbjct: 120 SHSHYTEAIADCIEFFNKSSQEGIMDGRKSDVLV 152

[Close]

BLAST of Clc05G20260 vs. TAIR 10
Match: AT1G75717.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 73.9 bits (180), Expect = 8.5e-14
Identity = 41/72 (56.94%), Postives = 51/72 (70.83%), Query Frame = 0


Query: 24 MKLFHRIRKLLVRFV-FSLPSRVSSSSSSRRRTSYDKSFDPPKTSC-SSYYSSHSHYDEA 83
          MKLFH++ K+L+R + F+L S       +  R+   + F+PPK SC SSYYSSH HY EA
Sbjct: 1  MKLFHKLGKILMRLIDFTLHSSSRRQKKNNSRSGDGERFEPPKISCSSSYYSSHVHYSEA 60

Query: 84 IADCIEFFNKSS 94
          IADCIEFFNKSS
Sbjct: 61 IADCIEFFNKSS 72

The following BLAST results are available for this feature:

BLAST of Clc05G20260 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60030.1	3.2e-39	86.36	hypothetical protein Csa_001336 [Cucumis sativus]	[more]
KAG7024157.1	1.3e-24	87.50	hypothetical protein SDJN02_12970, partial [Cucurbita argyrosperma subsp. argyro...	[more]
PON93881.1	1.5e-23	65.26	hypothetical protein TorRG33x02_102710 [Trema orientale]	[more]
XP_024925739.1	5.5e-23	60.00	uncharacterized protein LOC107408298 [Ziziphus jujuba]	[more]
XP_007017791.2	2.1e-22	65.96	PREDICTED: uncharacterized protein LOC18591544 [Theobroma cacao]	[more]

BLAST of Clc05G20260 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc05G20260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LDK4	1.6e-39	86.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G872120 PE=4 SV=1	[more]
A0A2P5F7X5	7.0e-24	65.26	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_102710 PE=4 SV...	[more]
A0A6P6FUZ0	2.7e-23	60.00	uncharacterized protein LOC107408298 OS=Ziziphus jujuba OX=326968 GN=LOC10740829...	[more]
A0A6J1ADC8	1.0e-22	65.96	uncharacterized protein LOC110417084 OS=Herrania umbratica OX=108875 GN=LOC11041...	[more]
A0A061FD82	1.0e-22	65.96	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_034216 PE=4 SV=1	[more]

BLAST of Clc05G20260 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75717.1	8.5e-14	56.94	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..67
None	No IPR available	PANTHER	PTHR35111:SF5	F10A5.9	coord: 13..103
None	No IPR available	PANTHER	PTHR35111	F10A5.9-RELATED	coord: 13..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc05G20260.1	Clc05G20260.1	mRNA