Clc05G19900 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAAGAGAGTAATTCAAAAAGCAAGTTCAAGAGGGTTTGCGTCTTCTGCGGCAGCAACTCGGGCCATCGAAAAGTCTTTAGCGATGCTGCTCTTGATTTGGGAAATGAACTGGTTAGTTTCTTTTACAAATCCATCACTACCCTTTACAGTATACGACTTGCACAAGTTCTTTCGATTGCGATTGAGTTTCGCCATTGATTGCGTTATTAGGAGATGTTCCATTCTTTTCTTGCCCTATGCTTCATTGGGTTTTCTTCTTTCTTTTGAAGTTCTTTTGTTCTTATTCCCATGGTTCCCATTTATGTGAATTACAGGTGGAGAGGAAGATTGATTTGGTGTACGGTGGGGGAAGTGTTGGGTTGATGGGTTTGATATCCCAGACTGTATACGATGGAGGCTGCCATGTTCTTGGGTAGGATAGAATCACAATTTGGGCAGTTTTATAATATGTGCCTTTCATTGATAATGCAAGAATTGAATGCATTTGAAGTGTACATTAATGAGAACTGTTCTTGATTTCTCTTTACATGCAGGATCATTCCAAAAGCTCTGATGCCCCATGAGGTATAACTTATAAGCTTGTTTCTTTCTTCATTTAGCTAAACCAGTATTCCTTTTTCTTTTTATTGTCGCTAGAGTTAGAACATGTCACTGTTACAAGTGCTTCACCTATTTTATCAAAGTATGAAAAAGAAATTGACCACATGTAAATTGTTTTGGATGATGATCCTGGTAGATTTCTGGTCAAACAGTTGGGGAGGTAAGAACGGTTTTGGACATGCATGAGCGCAAAGCTGCGATGGCTCGAGAATCAGACGCTTTTATTGCTCTTCCTGGTAATTTTATGTAGAATTCATGCCAACAACTTTGTACTTAGTTCTACATTATTGCAGCATTTTGTTTTTCCAATTCATTAGCTTGGAGGATTAGATGTATAGTTTGTTTAACGTATGATTATTATTTGCGTTAGGAGGGTATGGGACGATGGAAGAGCTGTTGGAAATGATAACGTGGGCCCAACTTGGTATCCACAAGAAACCAGTAAGCGTAACTTGTGCTAATTCTGTGGTTAAAGGTCCTACTTGTTAGCCTAGCCAACTTTCTTTTAAGCTTGTCCTGTGGGCATTACTCTGCACAGGTTGGCCTGCTTAATGTTGATGGTTACTACAATTCTTTGTTGGCACTATTTGATAATGGCGTTGTAGAAGGTTTCATTAAACCCGTTGCTCGAGAAATTGTGATATCTGCTCCAACAGCAAAGGAACTCATGGAAAAAATGGAGGTATCTGGCACCCTCCCATCCCAGTGTTTGTGTAGGAGAACTGAATAAATATAGAATGAAGTGAAACCAAAGCTTAGGTTCTGACTTCAAAATTTTTGGTATAAGACTAAAGTTTCATGTATCTTTGAGATCCCATAACGAGCAGATGCTTACCGAAGTGTAATCAATATCTTGTATTGACCTCTAAAATTGAATTGGAAGTTCAGTTTTGTATGATATGGAGATTACTCATCTGCTTTCTCGCTACAATTTTAACTATTCTATAAAGCCATTCTAATTCTATTTCGATAATTTTGTTTTCCAGGAACATACTCCTTTCCGTGAACATGTTGCTCCCCACGAAAGCTGGGAAATGGAGCACCTTGGTGATTATCCAAGCCATGAAAATAAACCATGACAGATAAGTGGTAATGGGACTTCCCTTGAGATTCCTGATGTCATCCATCATCATTTTTAATCATGAATTCAACCTGTTGTGATGGGGCCATAAGTGGTTCATGATTGTGTACTTGTGTTCTTTGTGATTGGAATTTTAATAAATACCCCTTTCTGTTTACAAAGTGCTTGGTTTGTGGTCAATCAAAACACCAATCAATATCTAGTGGACTGGTCATCACTTCTTAAAAAGGAAAAGCAAAATAGAGTAAACAAGCATTATTAGTGCAGAACTTTCTTTGCACTTTGAAGGCCTAGTCCCACATGTTTATTGTTCTAGTGGACTTGTTTAGGAGAGTTAAAGGAAGGTCACAGCCTTTCAAGGAATTGATGAATCCAAATAATTGAAAGTTGGTTTCATCCCTTTGAAAAACGTTTTATTAAATTACCTCGACCACCTTGAAAACACCCTTATTTTAAATACAATAGGCTCTCTATTCTTCCCTTTGAGTTGATATCAAGCGCCATACTTTTATAACTTTTCTTAAAAAGAAAGGGACTAGTCCTTTAATTTGGGCCCAAAAAACTGATGCCCTGGCATTGGGGTGCCACTGCCAGGTTGTAGTTGCAGAATTTTGGCCTGGGCTGATAAGAAGTTAAAATAAGGTACCTAACATTTCATAGAGCTCAACCTGTAATTTTATTTATACCTTCAGTACTTTAAAGGTGCATAGTTACACTGAGCTTGAATTGACAAATTTGAATGATTACAAATTTAGTTGGTTCATAAACTATTTTGTTTGTGAGAAAGAGTGGCGCCAAATTTTTGTGGAGGTTACCTATTAGCCATATTTACTTTGTTGAGGGCTTCTCTGACCATAATAGCAGCTTGTAGTTCAACTTGTTTAAAGGTCCATATTTATAATGAGCTTGAATGAAAAATTTGAATGGTTCAGATACTTCAGCTGTCTTTCAGTTTGAAAATGAATGGATATGATTTCTTGTGCTCTTTTTTGGACAAAAGAGAATATATATCTTTTCCTAATTGTGATGCACAACTCATGAGTTAATAGACACCAACATCAAAAGCCACTTCATCAATCAGATTCTCAGATAAGACAGGATATGAAAGAAAAAGAAATCAAGTCTCCTATTTCTATGACTTCCTTTTTTCTCCTATTGCTTCTTTAAAAAGTTAAGTAAATATTTGGATGCCATTTCGTCTGAAATTTGAAATTTTCAACTTGTCTGCAAAAAGCCTCTTTAACTTCCCATTAAAAGAGACATCCAGCTGTCAATACACTGACAAACCAAATGTAGCCGGTCCCAAAATTATAGGAAATCCAATGCTCTGTCATCCCTGGAAATCCAGTTCATCATAAGCTAGCTTTATTTGACAAGCTTGGCCTCAAGTCAGTCTGCCAAAGTGTCACATGGGTTTCTCAGGTTATCGTCCATTCCCGCCGCAGGTGTAGGGTTCATATGTTGTGAGCATCTTTCCAGTAGTCCTATGACGAAGTTTTGCTATCAATCACTTGGCTGGTTGTGATTGGAAGAATCATAAACTAAGGAATTTGGAGCTGAAAGCTTAGGAAAGAAGTGTTTCTGAATGCTGGGTTTGTTTGCATTCCTCATTTTTTTCTTGCTCTTTTGTCATTAAAGAATTGTTGCTAACACAAAGTAGTTAGTCAGAAGAAAGAAGAAACGACACGAGGAGCCTGTGTGTTTTGTGTGGTGTAAATTAGAGTGAATGATTTTGGCTGTTAATTCCTCCCTTTTCAGGGAACCCTTTCTTTCTGCTATGAGTCCCCACAGGCTATAGAACTGCTTACTACTCTGCTAGACATGTTTGTTTGCAATAATGGAGATGATGGAAAGCTGAGGTTATCAGATTATGGATCCATCTCCCTCAACTTTCCCCTTGCACTTGCAGATTACAGATGTTTCTGTTTTCTTTTAGGTGTGTTTTTTGATGAAATGCTGAATGTTATTTCTTTTCATGGGTGTTTGAATTGTTGGTAG ATGGAAGAGAGTAATTCAAAAAGCAAGTTCAAGAGGGTTTGCGTCTTCTGCGGCAGCAACTCGGGCCATCGAAAAGTCTTTAGCGATGCTGCTCTTGATTTGGGAAATGAACTGGTGGAGAGGAAGATTGATTTGGTGTACGGTGGGGGAAGTGTTGGGTTGATGGGTTTGATATCCCAGACTGTATACGATGGAGGCTGCCATGTTCTTGGGATCATTCCAAAAGCTCTGATGCCCCATGAGATTTCTGGTCAAACAGTTGGGGAGGTAAGAACGGTTTTGGACATGCATGAGCGCAAAGCTGCGATGGCTCGAGAATCAGACGCTTTTATTGCTCTTCCTGGAGGGTATGGGACGATGGAAGAGCTGTTGGAAATGATAACGTGGGCCCAACTTGGTATCCACAAGAAACCAGTTGGCCTGCTTAATGTTGATGGTTACTACAATTCTTTGTTGGCACTATTTGATAATGGCGTTGTAGAAGGTTTCATTAAACCCGTTGCTCGAGAAATTGTGATATCTGCTCCAACAGCAAAGGAACTCATGGAAAAAATGGAGGAACATACTCCTTTCCGTGAACATGTTGCTCCCCACGAAAGCTGGGAAATGGAGCACCTTGTTCATCATAAGCTAGCTTTATTTGACAAGCTTGGCCTCAAGTCAGTCTGCCAAAGTGTCACATGGGTTTCTCAGGGAACCCTTTCTTTCTGCTATGAGTCCCCACAGGCTATAGAACTGCTTACTACTCTGCTAGACATGTTTGTTTGCAATAATGGAGATGATGGAAAGCTGAGGTTATCAGATTATGGATCCATCTCCCTCAACTTTCCCCTTGCACTTGCAGATTACAGATGTTTCTGTTTTCTTTTAGGTGTGTTTTTTGATGAAATGCTGAATGTTATTTCTTTTCATGGGTGTTTGAATTGTTGGTAG ATGGAAGAGAGTAATTCAAAAAGCAAGTTCAAGAGGGTTTGCGTCTTCTGCGGCAGCAACTCGGGCCATCGAAAAGTCTTTAGCGATGCTGCTCTTGATTTGGGAAATGAACTGGTGGAGAGGAAGATTGATTTGGTGTACGGTGGGGGAAGTGTTGGGTTGATGGGTTTGATATCCCAGACTGTATACGATGGAGGCTGCCATGTTCTTGGGATCATTCCAAAAGCTCTGATGCCCCATGAGATTTCTGGTCAAACAGTTGGGGAGGTAAGAACGGTTTTGGACATGCATGAGCGCAAAGCTGCGATGGCTCGAGAATCAGACGCTTTTATTGCTCTTCCTGGAGGGTATGGGACGATGGAAGAGCTGTTGGAAATGATAACGTGGGCCCAACTTGGTATCCACAAGAAACCAGTTGGCCTGCTTAATGTTGATGGTTACTACAATTCTTTGTTGGCACTATTTGATAATGGCGTTGTAGAAGGTTTCATTAAACCCGTTGCTCGAGAAATTGTGATATCTGCTCCAACAGCAAAGGAACTCATGGAAAAAATGGAGGAACATACTCCTTTCCGTGAACATGTTGCTCCCCACGAAAGCTGGGAAATGGAGCACCTTGTTCATCATAAGCTAGCTTTATTTGACAAGCTTGGCCTCAAGTCAGTCTGCCAAAGTGTCACATGGGTTTCTCAGGGAACCCTTTCTTTCTGCTATGAGTCCCCACAGGCTATAGAACTGCTTACTACTCTGCTAGACATGTTTGTTTGCAATAATGGAGATGATGGAAAGCTGAGGTTATCAGATTATGGATCCATCTCCCTCAACTTTCCCCTTGCACTTGCAGATTACAGATGTTTCTGTTTTCTTTTAGGTGTGTTTTTTGATGAAATGCTGAATGTTATTTCTTTTCATGGGTGTTTGAATTGTTGGTAG MEESNSKSKFKRVCVFCGSNSGHRKVFSDAALDLGNELVERKIDLVYGGGSVGLMGLISQTVYDGGCHVLGIIPKALMPHEISGQTVGEVRTVLDMHERKAAMARESDAFIALPGGYGTMEELLEMITWAQLGIHKKPVGLLNVDGYYNSLLALFDNGVVEGFIKPVAREIVISAPTAKELMEKMEEHTPFREHVAPHESWEMEHLVHHKLALFDKLGLKSVCQSVTWVSQGTLSFCYESPQAIELLTTLLDMFVCNNGDDGKLRLSDYGSISLNFPLALADYRCFCFLLGVFFDEMLNVISFHGCLNCW Homology
BLAST of Clc05G19900 vs. NCBI nr
Match: XP_008452737.1 (PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8 [Cucumis melo] >XP_008452739.1 PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8 [Cucumis melo] >KAA0064507.1 cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8 [Cucumis melo var. makuwa] >TYK20083.1 cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8 [Cucumis melo var. makuwa]) HSP 1 Score: 417.2 bits (1071), Expect = 1.3e-112 Identity = 204/206 (99.03%), Postives = 206/206 (100.00%), Query Frame = 0
BLAST of Clc05G19900 vs. NCBI nr
Match: XP_038896103.1 (cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8 isoform X2 [Benincasa hispida]) HSP 1 Score: 414.8 bits (1065), Expect = 6.3e-112 Identity = 204/206 (99.03%), Postives = 206/206 (100.00%), Query Frame = 0
BLAST of Clc05G19900 vs. NCBI nr
Match: XP_004141324.1 (cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8 [Cucumis sativus] >KGN55345.1 hypothetical protein Csa_012438 [Cucumis sativus]) HSP 1 Score: 411.8 bits (1057), Expect = 5.4e-111 Identity = 202/206 (98.06%), Postives = 205/206 (99.51%), Query Frame = 0
BLAST of Clc05G19900 vs. NCBI nr
Match: XP_022940688.1 (cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8 [Cucurbita moschata] >XP_022982412.1 cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8-like [Cucurbita maxima] >XP_022982413.1 cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8-like [Cucurbita maxima] >XP_023524369.1 cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023524370.1 cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8-like isoform X2 [Cucurbita pepo subsp. pepo] >XP_023524371.1 cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8-like isoform X2 [Cucurbita pepo subsp. pepo] >XP_023524372.1 cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8-like isoform X2 [Cucurbita pepo subsp. pepo] >XP_023524373.1 cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8-like isoform X2 [Cucurbita pepo subsp. pepo] >XP_023524374.1 cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8-like isoform X3 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 411.4 bits (1056), Expect = 7.0e-111 Identity = 202/206 (98.06%), Postives = 204/206 (99.03%), Query Frame = 0
BLAST of Clc05G19900 vs. NCBI nr
Match: KAG6608368.1 (Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037711.1 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 408.3 bits (1048), Expect = 5.9e-110 Identity = 201/206 (97.57%), Postives = 203/206 (98.54%), Query Frame = 0
BLAST of Clc05G19900 vs. ExPASy Swiss-Prot
Match: Q84MC2 (Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8 OS=Arabidopsis thaliana OX=3702 GN=LOG8 PE=1 SV=1) HSP 1 Score: 340.1 bits (871), Expect = 2.6e-92 Identity = 164/204 (80.39%), Postives = 187/204 (91.67%), Query Frame = 0
BLAST of Clc05G19900 vs. ExPASy Swiss-Prot
Match: Q8L8B8 (Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 OS=Arabidopsis thaliana OX=3702 GN=LOG3 PE=1 SV=1) HSP 1 Score: 306.6 bits (784), Expect = 3.2e-82 Identity = 145/204 (71.08%), Postives = 170/204 (83.33%), Query Frame = 0
BLAST of Clc05G19900 vs. ExPASy Swiss-Prot
Match: Q8LR50 (Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL1 OS=Oryza sativa subsp. japonica OX=39947 GN=LOGL1 PE=2 SV=1) HSP 1 Score: 303.1 bits (775), Expect = 3.5e-81 Identity = 148/204 (72.55%), Postives = 169/204 (82.84%), Query Frame = 0
BLAST of Clc05G19900 vs. ExPASy Swiss-Prot
Match: Q9LFH3 (Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG4 OS=Arabidopsis thaliana OX=3702 GN=LOG4 PE=1 SV=1) HSP 1 Score: 297.0 bits (759), Expect = 2.5e-79 Identity = 142/204 (69.61%), Postives = 169/204 (82.84%), Query Frame = 0
BLAST of Clc05G19900 vs. ExPASy Swiss-Prot
Match: Q7XDB8 (Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL10 OS=Oryza sativa subsp. japonica OX=39947 GN=LOGL10 PE=2 SV=1) HSP 1 Score: 296.2 bits (757), Expect = 4.3e-79 Identity = 139/200 (69.50%), Postives = 167/200 (83.50%), Query Frame = 0
BLAST of Clc05G19900 vs. ExPASy TrEMBL
Match: A0A1S3BUK6 (Cytokinin riboside 5'-monophosphate phosphoribohydrolase OS=Cucumis melo OX=3656 GN=LOC103493670 PE=3 SV=1) HSP 1 Score: 417.2 bits (1071), Expect = 6.2e-113 Identity = 204/206 (99.03%), Postives = 206/206 (100.00%), Query Frame = 0
BLAST of Clc05G19900 vs. ExPASy TrEMBL
Match: A0A5A7VC14 (Cytokinin riboside 5'-monophosphate phosphoribohydrolase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G002070 PE=3 SV=1) HSP 1 Score: 417.2 bits (1071), Expect = 6.2e-113 Identity = 204/206 (99.03%), Postives = 206/206 (100.00%), Query Frame = 0
BLAST of Clc05G19900 vs. ExPASy TrEMBL
Match: A0A0A0L048 (Cytokinin riboside 5'-monophosphate phosphoribohydrolase OS=Cucumis sativus OX=3659 GN=Csa_4G646190 PE=3 SV=1) HSP 1 Score: 411.8 bits (1057), Expect = 2.6e-111 Identity = 202/206 (98.06%), Postives = 205/206 (99.51%), Query Frame = 0
BLAST of Clc05G19900 vs. ExPASy TrEMBL
Match: A0A6J1J4S1 (Cytokinin riboside 5'-monophosphate phosphoribohydrolase OS=Cucurbita maxima OX=3661 GN=LOC111481244 PE=3 SV=1) HSP 1 Score: 411.4 bits (1056), Expect = 3.4e-111 Identity = 202/206 (98.06%), Postives = 204/206 (99.03%), Query Frame = 0
BLAST of Clc05G19900 vs. ExPASy TrEMBL
Match: A0A6J1FQ04 (Cytokinin riboside 5'-monophosphate phosphoribohydrolase OS=Cucurbita moschata OX=3662 GN=LOC111446203 PE=3 SV=1) HSP 1 Score: 411.4 bits (1056), Expect = 3.4e-111 Identity = 202/206 (98.06%), Postives = 204/206 (99.03%), Query Frame = 0
BLAST of Clc05G19900 vs. TAIR 10
Match: AT5G11950.1 (Putative lysine decarboxylase family protein ) HSP 1 Score: 340.1 bits (871), Expect = 1.8e-93 Identity = 164/204 (80.39%), Postives = 187/204 (91.67%), Query Frame = 0
BLAST of Clc05G19900 vs. TAIR 10
Match: AT5G11950.2 (Putative lysine decarboxylase family protein ) HSP 1 Score: 340.1 bits (871), Expect = 1.8e-93 Identity = 164/204 (80.39%), Postives = 187/204 (91.67%), Query Frame = 0
BLAST of Clc05G19900 vs. TAIR 10
Match: AT2G37210.1 (lysine decarboxylase family protein ) HSP 1 Score: 306.6 bits (784), Expect = 2.3e-83 Identity = 145/204 (71.08%), Postives = 170/204 (83.33%), Query Frame = 0
BLAST of Clc05G19900 vs. TAIR 10
Match: AT3G53450.1 (Putative lysine decarboxylase family protein ) HSP 1 Score: 297.0 bits (759), Expect = 1.8e-80 Identity = 142/204 (69.61%), Postives = 169/204 (82.84%), Query Frame = 0
BLAST of Clc05G19900 vs. TAIR 10
Match: AT2G28305.1 (Putative lysine decarboxylase family protein ) HSP 1 Score: 295.4 bits (755), Expect = 5.2e-80 Identity = 137/200 (68.50%), Postives = 170/200 (85.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|