Clc05G18427 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc05G18427
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Beta-1,3-N-Acetylglucosaminyltransferase family protein, putative
Location	ClcChr05: 27498015 .. 27498698 (-)
RNA-Seq Expression	Clc05G18427
Synteny	Clc05G18427

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGCCTCCATCAAGTTTCTATGTGTACTCTTCTTCTTTTGTCTCCTCTCTAAAGGTATATATAATATTCATCTCAAAACTTACATAATATTTTATTTCATATTTTAACTAAATTATTAGAACCGTTTGGTTTCACCTAAAATAAAGTCGTGAGAGCTTATACGTTCAAGTGGACAGTTATCCCTAATAATTTCAATACTTTTCTTTTAAAAAGTTACTCGTAGTTTTTTCTACTAATACACTTAACTTCATTTACGTATTTTCTTGAGACTTGTATGTATAACCATCTACTCTTCGTCAAGTAAGCGATATGACGAAGATAACTTTACATTTTAATATTATTGTTTTGGATCATATATTTCTTTTTCAGGCAATTGCCAATGCAAGCTGGATGAGATAGCAATCAGTCAAAGTAGAACTGGAAAAGAAGTGAATGGGAAGCAAGAATGGAGAGCCACAATCACAAACAATTGTGTTTGTTCTCAATATAGTGTGAAATTTGATTGCAATGGATTTAATTCAGTTGAGAAGGTTGATGAATCAAAGTTAATGGTTGCTGGGTCAGTGTGTTTGGTTAACAATGGTCAACCAATCTTTAAATCAAATCCCATTTCCTTCACTTATGCTTGGGATAATGCCTTTGCTTTCAAACCCCTCTTCTCTCAAATTGCTTGTTCTTAA

mRNA sequence

ATGGTTGCCTCCATCAAGTTTCTATGTGTACTCTTCTTCTTTTGTCTCCTCTCTAAAGGCAATTGCCAATGCAAGCTGGATGAGATAGCAATCAGTCAAAGTAGAACTGGAAAAGAAGTGAATGGGAAGCAAGAATGGAGAGCCACAATCACAAACAATTGTGTTTGTTCTCAATATAGTGTGAAATTTGATTGCAATGGATTTAATTCAGTTGAGAAGGTTGATGAATCAAAGTTAATGGTTGCTGGGTCAGTGTGTTTGGTTAACAATGGTCAACCAATCTTTAAATCAAATCCCATTTCCTTCACTTATGCTTGGGATAATGCCTTTGCTTTCAAACCCCTCTTCTCTCAAATTGCTTGTTCTTAA

Coding sequence (CDS)

ATGGTTGCCTCCATCAAGTTTCTATGTGTACTCTTCTTCTTTTGTCTCCTCTCTAAAGGCAATTGCCAATGCAAGCTGGATGAGATAGCAATCAGTCAAAGTAGAACTGGAAAAGAAGTGAATGGGAAGCAAGAATGGAGAGCCACAATCACAAACAATTGTGTTTGTTCTCAATATAGTGTGAAATTTGATTGCAATGGATTTAATTCAGTTGAGAAGGTTGATGAATCAAAGTTAATGGTTGCTGGGTCAGTGTGTTTGGTTAACAATGGTCAACCAATCTTTAAATCAAATCCCATTTCCTTCACTTATGCTTGGGATAATGCCTTTGCTTTCAAACCCCTCTTCTCTCAAATTGCTTGTTCTTAA

Protein sequence

MVASIKFLCVLFFFCLLSKGNCQCKLDEIAISQSRTGKEVNGKQEWRATITNNCVCSQYSVKFDCNGFNSVEKVDESKLMVAGSVCLVNNGQPIFKSNPISFTYAWDNAFAFKPLFSQIACS

Homology

[Close]

BLAST of Clc05G18427 vs. NCBI nr
Match: XP_038896903.1 (TPD1 protein homolog 1-like [Benincasa hispida])

HSP 1 Score: 231.1 bits (588), Expect = 5.1e-57
Identity = 109/122 (89.34%), Postives = 115/122 (94.26%), Query Frame = 0


Query: 1   MVASIKFLCVLFFFCLLSKGNCQCKLDEIAISQSRTGKEVNGKQEWRATITNNCVCSQYS 60
           MVASIKFLCVLFFFCLLSKG  QC +++I ISQS TGKEVNGKQEWRATITNNCVCSQYS
Sbjct: 1   MVASIKFLCVLFFFCLLSKGKSQCSMNDITISQSTTGKEVNGKQEWRATITNNCVCSQYS 60

Query: 61  VKFDCNGFNSVEKVDESKLMVAGSVCLVNNGQPIFKSNPISFTYAWDNAFAFKPLFSQIA 120
           VKFDCNGFNSVEKVDES LMVAGS CLVNNGQP+FKSNPISFTYAWDNAF+FKPLFSQ+A
Sbjct: 61  VKFDCNGFNSVEKVDESILMVAGSECLVNNGQPMFKSNPISFTYAWDNAFSFKPLFSQVA 120

Query: 121 CS 123
           CS
Sbjct: 121 CS 122

[Close]

BLAST of Clc05G18427 vs. NCBI nr
Match: KGN60075.1 (hypothetical protein Csa_001952 [Cucumis sativus])

HSP 1 Score: 215.7 bits (548), Expect = 2.2e-52
Identity = 100/122 (81.97%), Postives = 110/122 (90.16%), Query Frame = 0


Query: 1   MVASIKFLCVLFFFCLLSKGNCQCKLDEIAISQSRTGKEVNGKQEWRATITNNCVCSQYS 60
           MVASI +  +LFFFCLLSKGNC+C +++I ISQS TG+EVNGKQEWRATI N CVCSQYS
Sbjct: 1   MVASINYFYLLFFFCLLSKGNCECSMNDIEISQSTTGREVNGKQEWRATIRNKCVCSQYS 60

Query: 61  VKFDCNGFNSVEKVDESKLMVAGSVCLVNNGQPIFKSNPISFTYAWDNAFAFKPLFSQIA 120
           VKFDCNGFN+VEKVDES LMVAGSVCLVNNGQPIF S+PISFTYAWDNAF F PLFSQ+A
Sbjct: 61  VKFDCNGFNTVEKVDESILMVAGSVCLVNNGQPIFNSSPISFTYAWDNAFPFSPLFSQVA 120

Query: 121 CS 123
           CS
Sbjct: 121 CS 122

[Close]

BLAST of Clc05G18427 vs. NCBI nr
Match: XP_022141896.1 (uncharacterized protein At1g05835-like [Momordica charantia])

HSP 1 Score: 181.8 bits (460), Expect = 3.6e-42
Identity = 84/122 (68.85%), Postives = 96/122 (78.69%), Query Frame = 0


Query: 1   MVASIKFLCVLFFFCLLSKGNCQCKLDEIAISQSRTGKEVNGKQEWRATITNNCVCSQYS 60
           MVASIK LC LFFFCLLSKGNCQC L +I+I Q  T K V G+QEW  T++NNCVCSQY+
Sbjct: 1   MVASIKLLCALFFFCLLSKGNCQCSLGDISIKQEATEKRVGGQQEWLVTVSNNCVCSQYN 60

Query: 61  VKFDCNGFNSVEKVDESKLMVAGSVCLVNNGQPIFKSNPISFTYAWDNAFAFKPLFSQIA 120
           VK DC GF+S E VD SKL   G+ CL+N G+PIFKS+PISFTYAWD  F FKPL SQ+A
Sbjct: 61  VKLDCTGFSSEEIVDSSKLTNTGNECLINGGRPIFKSDPISFTYAWDLIFPFKPLSSQVA 120

Query: 121 CS 123
           CS
Sbjct: 121 CS 122

[Close]

BLAST of Clc05G18427 vs. NCBI nr
Match: XP_030926576.1 (TPD1 protein homolog 1-like [Quercus lobata])

HSP 1 Score: 144.1 bits (362), Expect = 8.2e-31
Identity = 66/122 (54.10%), Postives = 83/122 (68.03%), Query Frame = 0


Query: 1   MVASIKFLCVLFFFCLLSKGNCQCKLDEIAISQSRTGKEVNGKQEWRATITNNCVCSQYS 60
           M   IKFLCVLF    + KGNCQC L ++ I QS+TG+ V  K  W  TI N C+CSQ  
Sbjct: 1   MATFIKFLCVLFVLSFVGKGNCQCTLSQVTIKQSKTGEVVQQKPVWSVTINNGCLCSQSD 60

Query: 61  VKFDCNGFNSVEKVDESKLMVAGSVCLVNNGQPIFKSNPISFTYAWDNAFAFKPLFSQIA 120
           +K  CNGF +V+ VD S L  +G+ CLVNNG P+  S+ +SFTYAWD +F+F+PL SQI 
Sbjct: 61  LKLSCNGFQTVKPVDPSVLSKSGNECLVNNGVPVAPSSSLSFTYAWDTSFSFQPLSSQIN 120

Query: 121 CS 123
           CS
Sbjct: 121 CS 122

[Close]

BLAST of Clc05G18427 vs. NCBI nr
Match: XP_006450371.1 (uncharacterized protein At1g05835 [Citrus clementina] >XP_006483715.1 uncharacterized protein At1g05835-like [Citrus sinensis] >ESR63611.1 hypothetical protein CICLE_v10009917mg [Citrus clementina] >GAY45889.1 hypothetical protein CUMW_092790 [Citrus unshiu])

HSP 1 Score: 143.3 bits (360), Expect = 1.4e-30
Identity = 62/123 (50.41%), Postives = 85/123 (69.11%), Query Frame = 0


Query: 1   MVASIKFLCVLFFFCLLSKGNCQCKLDEIAISQSRTGKEVNGKQEWRATITNNCVCSQYS 60
           M A +KFL  +  F +++KGNCQC LD+I +SQS+TGK V  KQEWR T+ N C+C+Q  
Sbjct: 1   MAAILKFLAAIMLFTIITKGNCQCTLDDIKVSQSQTGKTVPNKQEWRLTLNNTCICTQLG 60

Query: 61  VKFDCNGFNSVEKVDESKLMVAGSVC-LVNNGQPIFKSNPISFTYAWDNAFAFKPLFSQI 120
           +K  C GF +VE +D S + ++G  C +VNNG P +    +SF YAWD +F FKP+ SQI
Sbjct: 61  LKLSCKGFQTVEPIDPSIIAISGDECTVVNNGNPFYGFTTLSFNYAWDTSFPFKPISSQI 120

Query: 121 ACS 123
           +CS
Sbjct: 121 SCS 123

[Close]

BLAST of Clc05G18427 vs. ExPASy Swiss-Prot
Match: Q1G3T1 (TPD1 protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=TDL1 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 3.6e-05
Identity = 30/101 (29.70%), Postives = 49/101 (48.51%), Query Frame = 0


Query: 24  CKLDEIAISQSRTGKEVNGKQEWRATITNNCV--CSQYSVKFDCNGFNSVEKVDESKL-M 83
           C  D+I + Q  T    +G   +   I N+CV  C+   +   C  F+SV  V+      
Sbjct: 80  CSKDDIVLFQGSTNPLPSGVPSYTVEIFNSCVSDCNIAEIHVSCGWFSSVRLVNPRVFRR 139

Query: 84  VAGSVCLVNNGQPIFKSNPISFTYAWDNAFAFKPLFSQIAC 122
           +    CLVN+GQP+     +SF YA  N+F++    + ++C
Sbjct: 140 LDYDDCLVNDGQPLGPGQSLSFQYA--NSFSYPLSVASVSC 178

[Close]

BLAST of Clc05G18427 vs. ExPASy Swiss-Prot
Match: A8MS78 (Uncharacterized protein At1g05835 OS=Arabidopsis thaliana OX=3702 GN=At1g05835 PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 2.3e-04
Identity = 33/104 (31.73%), Postives = 52/104 (50.00%), Query Frame = 0


Query: 22  CQCKLDEIAISQSRTGKEVNGKQEWRATITNNC-VCSQYSVKFDCNGFNSVEKVDESKLM 81
           C+ K  E A+ Q++  K   GK ++R  + N C +C   +++  C GF     VD + L 
Sbjct: 26  CEGKSSEPAVRQTQV-KWREGK-KFRVEVMNKCPMCPIINLRLKCQGFPQ-SLVDPTFLR 85

Query: 82  VAGSV---CLVNNGQPIFKSNPISFTYAWDNAFAFKPLFSQIAC 122
           V  S    C+VN+G P+     +SF Y+  + FA +PL     C
Sbjct: 86  VLSSSAGNCVVNDGLPLSPMQTLSFNYSNTHQFALRPLSWSFQC 126

[Close]

BLAST of Clc05G18427 vs. ExPASy TrEMBL
Match: A0A0A0LDN0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G875990 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 1.1e-52
Identity = 100/122 (81.97%), Postives = 110/122 (90.16%), Query Frame = 0


Query: 1   MVASIKFLCVLFFFCLLSKGNCQCKLDEIAISQSRTGKEVNGKQEWRATITNNCVCSQYS 60
           MVASI +  +LFFFCLLSKGNC+C +++I ISQS TG+EVNGKQEWRATI N CVCSQYS
Sbjct: 1   MVASINYFYLLFFFCLLSKGNCECSMNDIEISQSTTGREVNGKQEWRATIRNKCVCSQYS 60

Query: 61  VKFDCNGFNSVEKVDESKLMVAGSVCLVNNGQPIFKSNPISFTYAWDNAFAFKPLFSQIA 120
           VKFDCNGFN+VEKVDES LMVAGSVCLVNNGQPIF S+PISFTYAWDNAF F PLFSQ+A
Sbjct: 61  VKFDCNGFNTVEKVDESILMVAGSVCLVNNGQPIFNSSPISFTYAWDNAFPFSPLFSQVA 120

Query: 121 CS 123
           CS
Sbjct: 121 CS 122

[Close]

BLAST of Clc05G18427 vs. ExPASy TrEMBL
Match: A0A0A0LEA1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G875970 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.3e-45
Identity = 91/122 (74.59%), Postives = 104/122 (85.25%), Query Frame = 0


Query: 1   MVASIKFLCVLFFFCLLSKGNCQCKLDEIAISQSRTGKEVNGKQEWRATITNNCVCSQYS 60
           MVASIKF+CVLFFFCLLSKGNC+C L++IAISQ+ TG  V GKQ W+ATITNNC+C Q S
Sbjct: 1   MVASIKFVCVLFFFCLLSKGNCECVLNDIAISQTTTGSIVQGKQVWKATITNNCICGQSS 60

Query: 61  VKFDCNGFNSVEKVDESKLMVAGSVCLVNNGQPIFKSNPISFTYAWDNAFAFKPLFSQIA 120
           +K DCNGFN+V+ VD S L V+GSVCLVN GQPIF+S PISFTYA DNAF FKPL SQI+
Sbjct: 61  LKLDCNGFNTVQAVDPSILAVSGSVCLVNGGQPIFQSTPISFTYASDNAFPFKPLSSQIS 120

Query: 121 CS 123
           CS
Sbjct: 121 CS 122

[Close]

BLAST of Clc05G18427 vs. ExPASy TrEMBL
Match: A0A6J1CKK7 (uncharacterized protein At1g05835-like OS=Momordica charantia OX=3673 GN=LOC111012144 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.7e-42
Identity = 84/122 (68.85%), Postives = 96/122 (78.69%), Query Frame = 0


Query: 1   MVASIKFLCVLFFFCLLSKGNCQCKLDEIAISQSRTGKEVNGKQEWRATITNNCVCSQYS 60
           MVASIK LC LFFFCLLSKGNCQC L +I+I Q  T K V G+QEW  T++NNCVCSQY+
Sbjct: 1   MVASIKLLCALFFFCLLSKGNCQCSLGDISIKQEATEKRVGGQQEWLVTVSNNCVCSQYN 60

Query: 61  VKFDCNGFNSVEKVDESKLMVAGSVCLVNNGQPIFKSNPISFTYAWDNAFAFKPLFSQIA 120
           VK DC GF+S E VD SKL   G+ CL+N G+PIFKS+PISFTYAWD  F FKPL SQ+A
Sbjct: 61  VKLDCTGFSSEEIVDSSKLTNTGNECLINGGRPIFKSDPISFTYAWDLIFPFKPLSSQVA 120

Query: 121 CS 123
           CS
Sbjct: 121 CS 122

[Close]

BLAST of Clc05G18427 vs. ExPASy TrEMBL
Match: A0A7N2M2J3 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 4.0e-31
Identity = 66/122 (54.10%), Postives = 83/122 (68.03%), Query Frame = 0


Query: 1   MVASIKFLCVLFFFCLLSKGNCQCKLDEIAISQSRTGKEVNGKQEWRATITNNCVCSQYS 60
           M   IKFLCVLF    + KGNCQC L ++ I QS+TG+ V  K  W  TI N C+CSQ  
Sbjct: 1   MATFIKFLCVLFVLSFVGKGNCQCTLSQVTIKQSKTGEVVQQKPVWSVTINNGCLCSQSD 60

Query: 61  VKFDCNGFNSVEKVDESKLMVAGSVCLVNNGQPIFKSNPISFTYAWDNAFAFKPLFSQIA 120
           +K  CNGF +V+ VD S L  +G+ CLVNNG P+  S+ +SFTYAWD +F+F+PL SQI 
Sbjct: 61  LKLSCNGFQTVKPVDPSVLSKSGNECLVNNGVPVAPSSSLSFTYAWDTSFSFQPLSSQIN 120

Query: 121 CS 123
           CS
Sbjct: 121 CS 122

[Close]

BLAST of Clc05G18427 vs. ExPASy TrEMBL
Match: A0A6J1CAC8 (uncharacterized protein LOC111008881 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111008881 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 6.8e-31
Identity = 67/121 (55.37%), Postives = 82/121 (67.77%), Query Frame = 0


Query: 1   MVASIKFLCVLFFFCLLSKGNCQCKLDEIAISQSRTGKEVNGKQEWRATITNNCVCSQYS 60
           M  S+K  CVL  F LL KGNCQC +  I +SQS TG +V GK +WR TI+NNC CSQ S
Sbjct: 1   MAVSMKLFCVLVLFSLLYKGNCQCSVGNIKVSQSPTGSQVLGKTQWRVTISNNCGCSQLS 60

Query: 61  VKFDCNGFNSVEKVDESKLMVAGSVCLVNNGQPIFKSNPISFTYAWDNAFAFKPLFSQIA 120
           +  DC G+ +VE VD + L  A +VCL N+G+P+ KS PISFTYAWDN + F PL S   
Sbjct: 61  ILLDCVGYQTVENVDPAILNSAANVCLFNSGRPLLKSAPISFTYAWDNPYPFTPLSSTTY 120

Query: 121 C 122
           C
Sbjct: 121 C 121

[Close]

BLAST of Clc05G18427 vs. TAIR 10
Match: AT4G32110.1 (Beta-1,3-N-Acetylglucosaminyltransferase family protein )

HSP 1 Score: 89.7 bits (221), Expect = 1.7e-18
Identity = 44/117 (37.61%), Postives = 64/117 (54.70%), Query Frame = 0


Query: 6   KFLCVLFFFCLLSKGNCQCKLDEIAISQSRTGKEVNGKQEWRATITNNC-VCSQYSVKFD 65
           K LC++ F   +++G   C L+ +++ QS+TGK V  K EW   +TN C  C   + +  
Sbjct: 7   KLLCLVLFLAFVNQGYGDCSLNSLSVKQSKTGKLVQNKPEWEVRVTNPCNNCKFQNTELL 66

Query: 66  CNGFNSVEKVDESKLMVAGSVCLVNNGQPIFKSNPISFTYAWDNAFAFKPLFSQIAC 122
           C GFNSV  +D S L+ +G  CLVN G+ I     I F Y WD +F  K +   + C
Sbjct: 67  CVGFNSVTPIDTSLLLKSGDACLVNAGKFIVPHVDIVFKYVWDTSFDLKVIDGVMVC 123

[Close]

BLAST of Clc05G18427 vs. TAIR 10
Match: AT4G32105.1 (Beta-1,3-N-Acetylglucosaminyltransferase family protein )

HSP 1 Score: 86.3 bits (212), Expect = 1.9e-17
Identity = 44/117 (37.61%), Postives = 60/117 (51.28%), Query Frame = 0


Query: 6   KFLCVLFFFCLLSKGNCQCKLDEIAISQSRTGKEVNGKQEWRATITNNC-VCSQYSVKFD 65
           K LC++ F   +++G   C L+ +++ QS+TGK V  K EW   +TN C  C     K  
Sbjct: 7   KVLCLVLFLAFVNQGYGDCHLNYLSVKQSKTGKLVQNKPEWEVRVTNPCNNCKFQYTKLS 66

Query: 66  CNGFNSVEKVDESKLMVAGSVCLVNNGQPIFKSNPISFTYAWDNAFAFKPLFSQIAC 122
           C GF SV  V  S L  +G +CL+N G  IF      F Y WD +F  K +   I C
Sbjct: 67  CVGFQSVTPVATSLLSKSGDICLLNAGNFIFPHVDFVFNYVWDTSFDLKVIDGVIVC 123

[Close]

BLAST of Clc05G18427 vs. TAIR 10
Match: AT4G32100.1 (Beta-1,3-N-Acetylglucosaminyltransferase family protein )

HSP 1 Score: 77.4 bits (189), Expect = 8.8e-15
Identity = 41/119 (34.45%), Postives = 60/119 (50.42%), Query Frame = 0


Query: 6   KFLCVLFFFCLLSK--GNCQCKLDEIAISQSRTGKEVNGKQEWRATITNNCVCSQYSVKF 65
           KFLC++  F  +++  G+    L+ +++ QS+TG  V  K EW   + N+  C       
Sbjct: 7   KFLCLVLLFAFVTQGYGDDSYSLESLSVIQSKTGNMVENKPEWEVKVLNSSPCYFTHTTL 66

Query: 66  DCNGFNSVEKVDESKLMVAGSVCLVNNGQPIFKSNPISFTYAWDNAFAFKPLFSQIACS 123
            C  F SV  +D   L  +G  CL+ NG  I   + ISF Y WD +F  K +   IACS
Sbjct: 67  SCVRFKSVTPIDSKVLSKSGDTCLLGNGDSI---HDISFKYVWDTSFDLKVVDGYIACS 122

[Close]

BLAST of Clc05G18427 vs. TAIR 10
Match: AT4G32090.1 (Beta-1,3-N-Acetylglucosaminyltransferase family protein )

HSP 1 Score: 74.3 bits (181), Expect = 7.4e-14
Identity = 38/119 (31.93%), Postives = 58/119 (48.74%), Query Frame = 0


Query: 1   MVASIKFLCVLFFFCLLSKGNCQCKLDEIAISQSRTGKEVNGKQEWRATITNNCVCSQYS 60
           M  ++K   V+    ++S G C C   +I I   RTG+E+ G+ EW+ T+ N C C Q  
Sbjct: 1   MAFALKCFVVVLLLSMVSHGLCLCTFGKIQIGAVRTGREIGGQPEWKVTVINTCNCFQKH 60

Query: 61  VKFDCNGFNSVEKVDESKLMVAGSVCLVNNGQPIFKSNPISFTYAWDNAFAFKPLFSQI 120
           V   C GF   + V    L   G+ CL+  G  +       FTYA    + F+P+ S++
Sbjct: 61  VTLSCGGFAPAKPVKPLLLQPQGNTCLMIKGAALPAGATAQFTYA-GQPYIFRPVGSKV 118

[Close]

BLAST of Clc05G18427 vs. TAIR 10
Match: AT1G32583.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: tapetum determinant 1 (TAIR:AT4G24972.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 49.3 bits (116), Expect = 2.6e-06
Identity = 30/101 (29.70%), Postives = 49/101 (48.51%), Query Frame = 0


Query: 24  CKLDEIAISQSRTGKEVNGKQEWRATITNNCV--CSQYSVKFDCNGFNSVEKVDESKL-M 83
           C  D+I + Q  T    +G   +   I N+CV  C+   +   C  F+SV  V+      
Sbjct: 80  CSKDDIVLFQGSTNPLPSGVPSYTVEIFNSCVSDCNIAEIHVSCGWFSSVRLVNPRVFRR 139

Query: 84  VAGSVCLVNNGQPIFKSNPISFTYAWDNAFAFKPLFSQIAC 122
           +    CLVN+GQP+     +SF YA  N+F++    + ++C
Sbjct: 140 LDYDDCLVNDGQPLGPGQSLSFQYA--NSFSYPLSVASVSC 178

The following BLAST results are available for this feature:

BLAST of Clc05G18427 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896903.1	5.1e-57	89.34	TPD1 protein homolog 1-like [Benincasa hispida]	[more]
KGN60075.1	2.2e-52	81.97	hypothetical protein Csa_001952 [Cucumis sativus]	[more]
XP_022141896.1	3.6e-42	68.85	uncharacterized protein At1g05835-like [Momordica charantia]	[more]
XP_030926576.1	8.2e-31	54.10	TPD1 protein homolog 1-like [Quercus lobata]	[more]
XP_006450371.1	1.4e-30	50.41	uncharacterized protein At1g05835 [Citrus clementina] >XP_006483715.1 uncharacte...	[more]

BLAST of Clc05G18427 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1G3T1	3.6e-05	29.70	TPD1 protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=TDL1 PE=2 SV=1	[more]
A8MS78	2.3e-04	31.73	Uncharacterized protein At1g05835 OS=Arabidopsis thaliana OX=3702 GN=At1g05835 P...	[more]

BLAST of Clc05G18427 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LDN0	1.1e-52	81.97	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G875990 PE=4 SV=1	[more]
A0A0A0LEA1	1.3e-45	74.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G875970 PE=4 SV=1	[more]
A0A6J1CKK7	1.7e-42	68.85	uncharacterized protein At1g05835-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A7N2M2J3	4.0e-31	54.10	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A6J1CAC8	6.8e-31	55.37	uncharacterized protein LOC111008881 isoform X1 OS=Momordica charantia OX=3673 G...	[more]

BLAST of Clc05G18427 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G32110.1	1.7e-18	37.61	Beta-1,3-N-Acetylglucosaminyltransferase family protein	[more]
AT4G32105.1	1.9e-17	37.61	Beta-1,3-N-Acetylglucosaminyltransferase family protein	[more]
AT4G32100.1	8.8e-15	34.45	Beta-1,3-N-Acetylglucosaminyltransferase family protein	[more]
AT4G32090.1	7.4e-14	31.93	Beta-1,3-N-Acetylglucosaminyltransferase family protein	[more]
AT1G32583.1	2.6e-06	29.70	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR040361	Tapetum determinant 1	PANTHER	PTHR33184	PROTEIN TAPETUM DETERMINANT 1-LIKE-RELATED	coord: 1..122
None	No IPR available	PANTHER	PTHR33184:SF44	BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN	coord: 1..122

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc05G18427.1	Clc05G18427.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0001709	cell fate determination