Clc05G18423 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc05G18423
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	protein TAPETUM DETERMINANT 1-like
Location	ClcChr05: 27488696 .. 27489489 (-)
RNA-Seq Expression	Clc05G18423
Synteny	Clc05G18423

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGCCTCCTCCATCAAGGTCTTTTGTGTTCTCTTCTTCTTTTGTTTCATTTCCAAAGGTAAATTAATTGTTTATATGATAGTCTTTAAATTCTCACCCTAACATTTTATATATCCATTTCATTTCTATCTCTAACATCTTTAAATGTGGGTTTCTTTTTATTTTAATCTCTAAATTTTCAAATATCTTTTTTTATTTTAACTTCTCAATTTTAATTTTAACGTGAAAAACTCAATACCTCACTCAGTACATGTAATTTTAATTAGTTACACATGAGGAAAAACCAATGACACAAGACTAACGAGAGAGATTTTTTCCTACACACTACTTTAGATTCGATTATAAGGAGAATTAACTTGTAATCCAAACAAACCGTTAAAAAGGATTATTTTTAACGTTCAAATATTACCACGAAAGACGAAGTACATAAATCATTTCGTTTTGTTGTCAATTTTCATTATTGTTTTTTTTTTTTTAAAGGGAATTGCCAATGCACCTTGGATGAGATTGCAATCAGCCAAACTTCAACTGGAAATCAAGTGAATGGGAAGAGAGAATGGAAAGCCACAATTACAAACAATTGTGTTTGTTCTCAATATAGTGTGAAATTTGATTGCAATGGATTTAACTCAGTTGAAAAGGTTGATGGATCCATTTTAATGGTTTCAGGGTCAGAGTGTTTGGTTAACAATGGTCAACCAATCTTTAATTCAAATCCAATTTCCTTCACTTATGCTTGGGATACCTCATTTGCTTTCAAGCCCCTCTCCTCTCAAGTTGCTTGTTCATGA

mRNA sequence

ATGGTTGCCTCCTCCATCAAGGTCTTTTGTGTTCTCTTCTTCTTTTGTTTCATTTCCAAAGGGAATTGCCAATGCACCTTGGATGAGATTGCAATCAGCCAAACTTCAACTGGAAATCAAGTGAATGGGAAGAGAGAATGGAAAGCCACAATTACAAACAATTGTGTTTGTTCTCAATATAGTGTGAAATTTGATTGCAATGGATTTAACTCAGTTGAAAAGGTTGATGGATCCATTTTAATGGTTTCAGGGTCAGAGTGTTTGGTTAACAATGGTCAACCAATCTTTAATTCAAATCCAATTTCCTTCACTTATGCTTGGGATACCTCATTTGCTTTCAAGCCCCTCTCCTCTCAAGTTGCTTGTTCATGA

Coding sequence (CDS)

ATGGTTGCCTCCTCCATCAAGGTCTTTTGTGTTCTCTTCTTCTTTTGTTTCATTTCCAAAGGGAATTGCCAATGCACCTTGGATGAGATTGCAATCAGCCAAACTTCAACTGGAAATCAAGTGAATGGGAAGAGAGAATGGAAAGCCACAATTACAAACAATTGTGTTTGTTCTCAATATAGTGTGAAATTTGATTGCAATGGATTTAACTCAGTTGAAAAGGTTGATGGATCCATTTTAATGGTTTCAGGGTCAGAGTGTTTGGTTAACAATGGTCAACCAATCTTTAATTCAAATCCAATTTCCTTCACTTATGCTTGGGATACCTCATTTGCTTTCAAGCCCCTCTCCTCTCAAGTTGCTTGTTCATGA

Protein sequence

MVASSIKVFCVLFFFCFISKGNCQCTLDEIAISQTSTGNQVNGKREWKATITNNCVCSQYSVKFDCNGFNSVEKVDGSILMVSGSECLVNNGQPIFNSNPISFTYAWDTSFAFKPLSSQVACS

Homology

[Close]

BLAST of Clc05G18423 vs. NCBI nr
Match: XP_038896903.1 (TPD1 protein homolog 1-like [Benincasa hispida])

HSP 1 Score: 206.5 bits (524), Expect = 1.4e-49
Identity = 94/122 (77.05%), Postives = 110/122 (90.16%), Query Frame = 0


Query: 2   VASSIKVFCVLFFFCFISKGNCQCTLDEIAISQTSTGNQVNGKREWKATITNNCVCSQYS 61
           + +SIK  CVLFFFC +SKG  QC++++I ISQ++TG +VNGK+EW+ATITNNCVCSQYS
Sbjct: 1   MVASIKFLCVLFFFCLLSKGKSQCSMNDITISQSTTGKEVNGKQEWRATITNNCVCSQYS 60

Query: 62  VKFDCNGFNSVEKVDGSILMVSGSECLVNNGQPIFNSNPISFTYAWDTSFAFKPLSSQVA 121
           VKFDCNGFNSVEKVD SILMV+GSECLVNNGQP+F SNPISFTYAWD +F+FKPL SQVA
Sbjct: 61  VKFDCNGFNSVEKVDESILMVAGSECLVNNGQPMFKSNPISFTYAWDNAFSFKPLFSQVA 120

Query: 122 CS 124
           CS
Sbjct: 121 CS 122

[Close]

BLAST of Clc05G18423 vs. NCBI nr
Match: KGN60075.1 (hypothetical protein Csa_001952 [Cucumis sativus])

HSP 1 Score: 196.4 bits (498), Expect = 1.4e-46
Identity = 89/122 (72.95%), Postives = 107/122 (87.70%), Query Frame = 0


Query: 2   VASSIKVFCVLFFFCFISKGNCQCTLDEIAISQTSTGNQVNGKREWKATITNNCVCSQYS 61
           + +SI  F +LFFFC +SKGNC+C++++I ISQ++TG +VNGK+EW+ATI N CVCSQYS
Sbjct: 1   MVASINYFYLLFFFCLLSKGNCECSMNDIEISQSTTGREVNGKQEWRATIRNKCVCSQYS 60

Query: 62  VKFDCNGFNSVEKVDGSILMVSGSECLVNNGQPIFNSNPISFTYAWDTSFAFKPLSSQVA 121
           VKFDCNGFN+VEKVD SILMV+GS CLVNNGQPIFNS+PISFTYAWD +F F PL SQVA
Sbjct: 61  VKFDCNGFNTVEKVDESILMVAGSVCLVNNGQPIFNSSPISFTYAWDNAFPFSPLFSQVA 120

Query: 122 CS 124
           CS
Sbjct: 121 CS 122

[Close]

BLAST of Clc05G18423 vs. NCBI nr
Match: XP_022141896.1 (uncharacterized protein At1g05835-like [Momordica charantia])

HSP 1 Score: 171.4 bits (433), Expect = 4.8e-39
Identity = 77/122 (63.11%), Postives = 97/122 (79.51%), Query Frame = 0


Query: 2   VASSIKVFCVLFFFCFISKGNCQCTLDEIAISQTSTGNQVNGKREWKATITNNCVCSQYS 61
           + +SIK+ C LFFFC +SKGNCQC+L +I+I Q +T  +V G++EW  T++NNCVCSQY+
Sbjct: 1   MVASIKLLCALFFFCLLSKGNCQCSLGDISIKQEATEKRVGGQQEWLVTVSNNCVCSQYN 60

Query: 62  VKFDCNGFNSVEKVDGSILMVSGSECLVNNGQPIFNSNPISFTYAWDTSFAFKPLSSQVA 121
           VK DC GF+S E VD S L  +G+ECL+N G+PIF S+PISFTYAWD  F FKPLSSQVA
Sbjct: 61  VKLDCTGFSSEEIVDSSKLTNTGNECLINGGRPIFKSDPISFTYAWDLIFPFKPLSSQVA 120

Query: 122 CS 124
           CS
Sbjct: 121 CS 122

[Close]

BLAST of Clc05G18423 vs. NCBI nr
Match: XP_030926576.1 (TPD1 protein homolog 1-like [Quercus lobata])

HSP 1 Score: 151.8 bits (382), Expect = 4.0e-33
Identity = 69/122 (56.56%), Postives = 87/122 (71.31%), Query Frame = 0


Query: 2   VASSIKVFCVLFFFCFISKGNCQCTLDEIAISQTSTGNQVNGKREWKATITNNCVCSQYS 61
           +A+ IK  CVLF   F+ KGNCQCTL ++ I Q+ TG  V  K  W  TI N C+CSQ  
Sbjct: 1   MATFIKFLCVLFVLSFVGKGNCQCTLSQVTIKQSKTGEVVQQKPVWSVTINNGCLCSQSD 60

Query: 62  VKFDCNGFNSVEKVDGSILMVSGSECLVNNGQPIFNSNPISFTYAWDTSFAFKPLSSQVA 121
           +K  CNGF +V+ VD S+L  SG+ECLVNNG P+  S+ +SFTYAWDTSF+F+PLSSQ+ 
Sbjct: 61  LKLSCNGFQTVKPVDPSVLSKSGNECLVNNGVPVAPSSSLSFTYAWDTSFSFQPLSSQIN 120

Query: 122 CS 124
           CS
Sbjct: 121 CS 122

[Close]

BLAST of Clc05G18423 vs. NCBI nr
Match: TXG53794.1 (hypothetical protein EZV62_019050 [Acer yangbiense])

HSP 1 Score: 148.3 bits (373), Expect = 4.4e-32
Identity = 71/123 (57.72%), Postives = 85/123 (69.11%), Query Frame = 0


Query: 2   VASSIKVFCVLFFFCF-ISKGNCQCTLDEIAISQTSTGNQVNGKREWKATITNNCVCSQY 61
           +A+ + VF  LFFF F +SKG CQCT + + I+Q   G QV  K EWK  I+  C C+Q 
Sbjct: 1   MATFLNVFAALFFFSFVVSKGYCQCTTENLQINQQQIGKQVQSKPEWKVAISTGCPCAQL 60

Query: 62  SVKFDCNGFNSVEKVDGSILMVSGSECLVNNGQPIFNSNPISFTYAWDTSFAFKPLSSQV 121
            VK  C+GF +VE +D S+L  SG ECLVNNGQPIF +   SFTYAWDTSF FK LSSQV
Sbjct: 61  EVKLACDGFQTVEAIDSSVLAKSGGECLVNNGQPIFPNKDFSFTYAWDTSFQFKTLSSQV 120

Query: 122 ACS 124
           ACS
Sbjct: 121 ACS 123

[Close]

BLAST of Clc05G18423 vs. ExPASy Swiss-Prot
Match: Q1G3T1 (TPD1 protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=TDL1 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 5.6e-06
Identity = 32/101 (31.68%), Postives = 52/101 (51.49%), Query Frame = 0


Query: 25  CTLDEIAISQTSTGNQVNGKREWKATITNNCV--CSQYSVKFDCNGFNSVEKVDGSIL-M 84
           C+ D+I + Q ST    +G   +   I N+CV  C+   +   C  F+SV  V+  +   
Sbjct: 80  CSKDDIVLFQGSTNPLPSGVPSYTVEIFNSCVSDCNIAEIHVSCGWFSSVRLVNPRVFRR 139

Query: 85  VSGSECLVNNGQPIFNSNPISFTYAWDTSFAFKPLSSQVAC 123
           +   +CLVN+GQP+     +SF YA   SF++    + V+C
Sbjct: 140 LDYDDCLVNDGQPLGPGQSLSFQYA--NSFSYPLSVASVSC 178

[Close]

BLAST of Clc05G18423 vs. ExPASy Swiss-Prot
Match: A8MS78 (Uncharacterized protein At1g05835 OS=Arabidopsis thaliana OX=3702 GN=At1g05835 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 5.3e-04
Identity = 28/103 (27.18%), Postives = 49/103 (47.57%), Query Frame = 0


Query: 23  CQCTLDEIAISQTSTGNQVNGKREWKATITNNC-VCSQYSVKFDCNGF--NSVEKVDGSI 82
           C+    E A+ QT    +    ++++  + N C +C   +++  C GF  + V+     +
Sbjct: 26  CEGKSSEPAVRQTQV--KWREGKKFRVEVMNKCPMCPIINLRLKCQGFPQSLVDPTFLRV 85

Query: 83  LMVSGSECLVNNGQPIFNSNPISFTYAWDTSFAFKPLSSQVAC 123
           L  S   C+VN+G P+     +SF Y+    FA +PLS    C
Sbjct: 86  LSSSAGNCVVNDGLPLSPMQTLSFNYSNTHQFALRPLSWSFQC 126

[Close]

BLAST of Clc05G18423 vs. ExPASy TrEMBL
Match: A0A0A0LDN0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G875990 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 6.8e-47
Identity = 89/122 (72.95%), Postives = 107/122 (87.70%), Query Frame = 0


Query: 2   VASSIKVFCVLFFFCFISKGNCQCTLDEIAISQTSTGNQVNGKREWKATITNNCVCSQYS 61
           + +SI  F +LFFFC +SKGNC+C++++I ISQ++TG +VNGK+EW+ATI N CVCSQYS
Sbjct: 1   MVASINYFYLLFFFCLLSKGNCECSMNDIEISQSTTGREVNGKQEWRATIRNKCVCSQYS 60

Query: 62  VKFDCNGFNSVEKVDGSILMVSGSECLVNNGQPIFNSNPISFTYAWDTSFAFKPLSSQVA 121
           VKFDCNGFN+VEKVD SILMV+GS CLVNNGQPIFNS+PISFTYAWD +F F PL SQVA
Sbjct: 61  VKFDCNGFNTVEKVDESILMVAGSVCLVNNGQPIFNSSPISFTYAWDNAFPFSPLFSQVA 120

Query: 122 CS 124
           CS
Sbjct: 121 CS 122

[Close]

BLAST of Clc05G18423 vs. ExPASy TrEMBL
Match: A0A0A0LEA1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G875970 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 7.8e-43
Identity = 85/122 (69.67%), Postives = 101/122 (82.79%), Query Frame = 0


Query: 2   VASSIKVFCVLFFFCFISKGNCQCTLDEIAISQTSTGNQVNGKREWKATITNNCVCSQYS 61
           + +SIK  CVLFFFC +SKGNC+C L++IAISQT+TG+ V GK+ WKATITNNC+C Q S
Sbjct: 1   MVASIKFVCVLFFFCLLSKGNCECVLNDIAISQTTTGSIVQGKQVWKATITNNCICGQSS 60

Query: 62  VKFDCNGFNSVEKVDGSILMVSGSECLVNNGQPIFNSNPISFTYAWDTSFAFKPLSSQVA 121
           +K DCNGFN+V+ VD SIL VSGS CLVN GQPIF S PISFTYA D +F FKPLSSQ++
Sbjct: 61  LKLDCNGFNTVQAVDPSILAVSGSVCLVNGGQPIFQSTPISFTYASDNAFPFKPLSSQIS 120

Query: 122 CS 124
           CS
Sbjct: 121 CS 122

[Close]

BLAST of Clc05G18423 vs. ExPASy TrEMBL
Match: A0A6J1CKK7 (uncharacterized protein At1g05835-like OS=Momordica charantia OX=3673 GN=LOC111012144 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.3e-39
Identity = 77/122 (63.11%), Postives = 97/122 (79.51%), Query Frame = 0


Query: 2   VASSIKVFCVLFFFCFISKGNCQCTLDEIAISQTSTGNQVNGKREWKATITNNCVCSQYS 61
           + +SIK+ C LFFFC +SKGNCQC+L +I+I Q +T  +V G++EW  T++NNCVCSQY+
Sbjct: 1   MVASIKLLCALFFFCLLSKGNCQCSLGDISIKQEATEKRVGGQQEWLVTVSNNCVCSQYN 60

Query: 62  VKFDCNGFNSVEKVDGSILMVSGSECLVNNGQPIFNSNPISFTYAWDTSFAFKPLSSQVA 121
           VK DC GF+S E VD S L  +G+ECL+N G+PIF S+PISFTYAWD  F FKPLSSQVA
Sbjct: 61  VKLDCTGFSSEEIVDSSKLTNTGNECLINGGRPIFKSDPISFTYAWDLIFPFKPLSSQVA 120

Query: 122 CS 124
           CS
Sbjct: 121 CS 122

[Close]

BLAST of Clc05G18423 vs. ExPASy TrEMBL
Match: A0A7N2M2J3 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.9e-33
Identity = 69/122 (56.56%), Postives = 87/122 (71.31%), Query Frame = 0


Query: 2   VASSIKVFCVLFFFCFISKGNCQCTLDEIAISQTSTGNQVNGKREWKATITNNCVCSQYS 61
           +A+ IK  CVLF   F+ KGNCQCTL ++ I Q+ TG  V  K  W  TI N C+CSQ  
Sbjct: 1   MATFIKFLCVLFVLSFVGKGNCQCTLSQVTIKQSKTGEVVQQKPVWSVTINNGCLCSQSD 60

Query: 62  VKFDCNGFNSVEKVDGSILMVSGSECLVNNGQPIFNSNPISFTYAWDTSFAFKPLSSQVA 121
           +K  CNGF +V+ VD S+L  SG+ECLVNNG P+  S+ +SFTYAWDTSF+F+PLSSQ+ 
Sbjct: 61  LKLSCNGFQTVKPVDPSVLSKSGNECLVNNGVPVAPSSSLSFTYAWDTSFSFQPLSSQIN 120

Query: 122 CS 124
           CS
Sbjct: 121 CS 122

[Close]

BLAST of Clc05G18423 vs. ExPASy TrEMBL
Match: A0A5C7HA34 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_019050 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 2.1e-32
Identity = 71/123 (57.72%), Postives = 85/123 (69.11%), Query Frame = 0


Query: 2   VASSIKVFCVLFFFCF-ISKGNCQCTLDEIAISQTSTGNQVNGKREWKATITNNCVCSQY 61
           +A+ + VF  LFFF F +SKG CQCT + + I+Q   G QV  K EWK  I+  C C+Q 
Sbjct: 1   MATFLNVFAALFFFSFVVSKGYCQCTTENLQINQQQIGKQVQSKPEWKVAISTGCPCAQL 60

Query: 62  SVKFDCNGFNSVEKVDGSILMVSGSECLVNNGQPIFNSNPISFTYAWDTSFAFKPLSSQV 121
            VK  C+GF +VE +D S+L  SG ECLVNNGQPIF +   SFTYAWDTSF FK LSSQV
Sbjct: 61  EVKLACDGFQTVEAIDSSVLAKSGGECLVNNGQPIFPNKDFSFTYAWDTSFQFKTLSSQV 120

Query: 122 ACS 124
           ACS
Sbjct: 121 ACS 123

[Close]

BLAST of Clc05G18423 vs. TAIR 10
Match: AT4G32110.1 (Beta-1,3-N-Acetylglucosaminyltransferase family protein )

HSP 1 Score: 95.5 bits (236), Expect = 3.1e-20
Identity = 46/123 (37.40%), Postives = 71/123 (57.72%), Query Frame = 0


Query: 1   MVASSIKVFCVLFFFCFISKGNCQCTLDEIAISQTSTGNQVNGKREWKATITNNC-VCSQ 60
           M +++ K+ C++ F  F+++G   C+L+ +++ Q+ TG  V  K EW+  +TN C  C  
Sbjct: 1   MASNACKLLCLVLFLAFVNQGYGDCSLNSLSVKQSKTGKLVQNKPEWEVRVTNPCNNCKF 60

Query: 61  YSVKFDCNGFNSVEKVDGSILMVSGSECLVNNGQPIFNSNPISFTYAWDTSFAFKPLSSQ 120
            + +  C GFNSV  +D S+L+ SG  CLVN G+ I     I F Y WDTSF  K +   
Sbjct: 61  QNTELLCVGFNSVTPIDTSLLLKSGDACLVNAGKFIVPHVDIVFKYVWDTSFDLKVIDGV 120

Query: 121 VAC 123
           + C
Sbjct: 121 MVC 123

[Close]

BLAST of Clc05G18423 vs. TAIR 10
Match: AT4G32105.1 (Beta-1,3-N-Acetylglucosaminyltransferase family protein )

HSP 1 Score: 90.5 bits (223), Expect = 1.0e-18
Identity = 46/123 (37.40%), Postives = 65/123 (52.85%), Query Frame = 0


Query: 1   MVASSIKVFCVLFFFCFISKGNCQCTLDEIAISQTSTGNQVNGKREWKATITNNC-VCSQ 60
           M +++ KV C++ F  F+++G   C L+ +++ Q+ TG  V  K EW+  +TN C  C  
Sbjct: 1   MASNACKVLCLVLFLAFVNQGYGDCHLNYLSVKQSKTGKLVQNKPEWEVRVTNPCNNCKF 60

Query: 61  YSVKFDCNGFNSVEKVDGSILMVSGSECLVNNGQPIFNSNPISFTYAWDTSFAFKPLSSQ 120
              K  C GF SV  V  S+L  SG  CL+N G  IF      F Y WDTSF  K +   
Sbjct: 61  QYTKLSCVGFQSVTPVATSLLSKSGDICLLNAGNFIFPHVDFVFNYVWDTSFDLKVIDGV 120

Query: 121 VAC 123
           + C
Sbjct: 121 IVC 123

[Close]

BLAST of Clc05G18423 vs. TAIR 10
Match: AT4G32100.1 (Beta-1,3-N-Acetylglucosaminyltransferase family protein )

HSP 1 Score: 85.1 bits (209), Expect = 4.3e-17
Identity = 43/125 (34.40%), Postives = 66/125 (52.80%), Query Frame = 0


Query: 1   MVASSIKVFCVLFFFCFISK--GNCQCTLDEIAISQTSTGNQVNGKREWKATITNNCVCS 60
           M  ++ K  C++  F F+++  G+   +L+ +++ Q+ TGN V  K EW+  + N+  C 
Sbjct: 1   MATNACKFLCLVLLFAFVTQGYGDDSYSLESLSVIQSKTGNMVENKPEWEVKVLNSSPCY 60

Query: 61  QYSVKFDCNGFNSVEKVDGSILMVSGSECLVNNGQPIFNSNPISFTYAWDTSFAFKPLSS 120
                  C  F SV  +D  +L  SG  CL+ NG  I   + ISF Y WDTSF  K +  
Sbjct: 61  FTHTTLSCVRFKSVTPIDSKVLSKSGDTCLLGNGDSI---HDISFKYVWDTSFDLKVVDG 120

Query: 121 QVACS 124
            +ACS
Sbjct: 121 YIACS 122

[Close]

BLAST of Clc05G18423 vs. TAIR 10
Match: AT4G32090.1 (Beta-1,3-N-Acetylglucosaminyltransferase family protein )

HSP 1 Score: 77.4 bits (189), Expect = 8.9e-15
Identity = 40/119 (33.61%), Postives = 59/119 (49.58%), Query Frame = 0


Query: 2   VASSIKVFCVLFFFCFISKGNCQCTLDEIAISQTSTGNQVNGKREWKATITNNCVCSQYS 61
           +A ++K F V+     +S G C CT  +I I    TG ++ G+ EWK T+ N C C Q  
Sbjct: 1   MAFALKCFVVVLLLSMVSHGLCLCTFGKIQIGAVRTGREIGGQPEWKVTVINTCNCFQKH 60

Query: 62  VKFDCNGFNSVEKVDGSILMVSGSECLVNNGQPIFNSNPISFTYAWDTSFAFKPLSSQV 121
           V   C GF   + V   +L   G+ CL+  G  +       FTYA    + F+P+ S+V
Sbjct: 61  VTLSCGGFAPAKPVKPLLLQPQGNTCLMIKGAALPAGATAQFTYA-GQPYIFRPVGSKV 118

[Close]

BLAST of Clc05G18423 vs. TAIR 10
Match: AT1G32583.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: tapetum determinant 1 (TAIR:AT4G24972.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 52.0 bits (123), Expect = 4.0e-07
Identity = 32/101 (31.68%), Postives = 52/101 (51.49%), Query Frame = 0


Query: 25  CTLDEIAISQTSTGNQVNGKREWKATITNNCV--CSQYSVKFDCNGFNSVEKVDGSIL-M 84
           C+ D+I + Q ST    +G   +   I N+CV  C+   +   C  F+SV  V+  +   
Sbjct: 80  CSKDDIVLFQGSTNPLPSGVPSYTVEIFNSCVSDCNIAEIHVSCGWFSSVRLVNPRVFRR 139

Query: 85  VSGSECLVNNGQPIFNSNPISFTYAWDTSFAFKPLSSQVAC 123
           +   +CLVN+GQP+     +SF YA   SF++    + V+C
Sbjct: 140 LDYDDCLVNDGQPLGPGQSLSFQYA--NSFSYPLSVASVSC 178

The following BLAST results are available for this feature:

BLAST of Clc05G18423 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896903.1	1.4e-49	77.05	TPD1 protein homolog 1-like [Benincasa hispida]	[more]
KGN60075.1	1.4e-46	72.95	hypothetical protein Csa_001952 [Cucumis sativus]	[more]
XP_022141896.1	4.8e-39	63.11	uncharacterized protein At1g05835-like [Momordica charantia]	[more]
XP_030926576.1	4.0e-33	56.56	TPD1 protein homolog 1-like [Quercus lobata]	[more]
TXG53794.1	4.4e-32	57.72	hypothetical protein EZV62_019050 [Acer yangbiense]	[more]

BLAST of Clc05G18423 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1G3T1	5.6e-06	31.68	TPD1 protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=TDL1 PE=2 SV=1	[more]
A8MS78	5.3e-04	27.18	Uncharacterized protein At1g05835 OS=Arabidopsis thaliana OX=3702 GN=At1g05835 P...	[more]

BLAST of Clc05G18423 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LDN0	6.8e-47	72.95	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G875990 PE=4 SV=1	[more]
A0A0A0LEA1	7.8e-43	69.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G875970 PE=4 SV=1	[more]
A0A6J1CKK7	2.3e-39	63.11	uncharacterized protein At1g05835-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A7N2M2J3	1.9e-33	56.56	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A5C7HA34	2.1e-32	57.72	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_019050 PE=4 SV=1	[more]

BLAST of Clc05G18423 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G32110.1	3.1e-20	37.40	Beta-1,3-N-Acetylglucosaminyltransferase family protein	[more]
AT4G32105.1	1.0e-18	37.40	Beta-1,3-N-Acetylglucosaminyltransferase family protein	[more]
AT4G32100.1	4.3e-17	34.40	Beta-1,3-N-Acetylglucosaminyltransferase family protein	[more]
AT4G32090.1	8.9e-15	33.61	Beta-1,3-N-Acetylglucosaminyltransferase family protein	[more]
AT1G32583.1	4.0e-07	31.68	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33184:SF44	BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN	coord: 2..123
IPR040361	Tapetum determinant 1	PANTHER	PTHR33184	PROTEIN TAPETUM DETERMINANT 1-LIKE-RELATED	coord: 2..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc05G18423.1	Clc05G18423.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0001709	cell fate determination