Clc05G17830 (gene) Watermelon (cordophanus) v2

Overview
NameClc05G17830
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionHeat shock protein DnaJ, cysteine-rich domain containing protein
LocationClcChr05: 26807785 .. 26810783 (-)
RNA-Seq ExpressionClc05G17830
SyntenyClc05G17830
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAGTTCTGTGTCTTGCAAGCGTGTGATTATGGCGAAATCGATTGACGGAAGAGGACTTGCTTCTACGAGAACAATATTAATCGGTTCCGGATTTTCTCCCAATCGTGTTTTGTTCACCGATTCGAGGCCATTGAGCTCGAGGATTTGTGGCGTGCGAGCTTCCATGGTGGATTCTTATGGAAGCTCCGATTTCGTCAAGAGGATGGAGCAAGCATGGGAGATCTCTCAGGTATTCGCGATCTTTTACACTCCTCGTAATTTCCTTTCATTTCATGGCTGTTTCATTTAGCTATGTTTCTGGCTGTCCTTTGAGCGACGGTATATCCAGTAGATGATTTCTTCCTCTTTCTTACGCCATGTCTTTCCTTCCAACGAAGATTGAAATATTCATTTCCTCTGATACTCTGTGAGCATTTATGGCGAGCTTTATGAATCTAATCGAGGAAATTAGACCTGATAATTCAACGAGCCTGTTTGCTTACATTCCTTTCCTGCGTTTTGGTAGTCAGGAAGAGGAAGAGGAAACGCAAAATGCCTAATCCTAATCCGCTGAACCTAGCTTAGTCTGCAAAGATTAATGGCAACATTTGTTAACCTAATCGAAGAAAACCAGTCCTCATAACATAACGCGCGCAGCTTCCAGCGCTAACGTTCTCTTTCTACTCTAACGCGATCAGGCGGAGGAGCCGATGAATTTCCTATGATTCTTCTGTCATGCCAGTTTAGAAATAACATCTGTTTACAAACTCAGCAGGTGGATATTCAAATTCTTTTGAATAGCTTATATTTGCTTCCTGTTCATCATCTTATTGCAACATGATTTACAATATTTTTTAAAAAAACTATTCCGTTTGATACTGTTCGAACTTAAGATGAATTGAATGCGACGTCATGAAGAGCTAACAATCCTAGATATTTTGACAGCAACCAACGCCTATTTGCTGCTCTTCTTGCAACTCAAAAGGACATGTTGAGTGCAAATGGTGCACAGGAACTGGCTTCTTTATTCTTGGAGATAATATGCTTTGTCAAGTTCCATCCAGAAACACTAGCTGTGTCATTTGTGCTGGCAAGGTAACCACGAAACTGGTTTGATCTCATACTTTTTTTTTTTCTCCTTGAATCATTGGATGTGTTTTGAACCACTTTCACGGTGTGTTTGCTGGTGCTATCATGCTTGATAATTAATTACTTTTTATCCCAATACTTCATGTAAATACTCAATAAAATGTGTTTGATGATATAACAATTTGTGGTGTTTTTATCTAATTAAAAGTATTTTTTTTGTAATAATTAACACTTAACAAATATTTTTAGAATGGACAAACCAGTAAATAAAATGATTATTAATAAGTTGCAGTGTTTTAGTGCGTAGAGAAATTAGTGAGATAAATATGTAAAGTCATGAGTCTGCGTGAGAAAGTGTGGGTAGAAACTAGAAAGTATTTAAGATGGGCATTTAAGTCAAAATTACTTCATTTGCTTCTTTGAAAAATACTTTTAAGTTAATTTGGCTTTTTAAAAAAGTGTTTTTAACTTGTACTCATACATAAACATTTGAGGCAGGCCAAAGTGTTTTTAACCACTAGAAATAACTTTTTTAATTATTAAGAGCACTCTCCCTTAAGCATTAAGGCCGAAAGAGCTTTTACATATTTTGAGGGTGCTGATATTTACCCTTGATACGTTAATAACCACTTAGTTTTAGAAAGTTGGTCAATAAATATTACCTTCAACTGTTAGTTGCTTTGTTTGTTGTCTACCTTTTGTCCTCAAAACCAAGCTGTCTTTAAAAACTCATTTTTGTTTTTAGAATTTGACTAAGAATTCAAAAGTTTACTTAGGAAAGATGTAAACTAGGATTAAGAAATTGTGATTAAACAAACACCATTTTAAAATACTAAAAATAAAGAACCAAATAGTTAAAAAAAAATGGAACTTAGTAATGCTTTTTTTACATGATTAAAAACATTTAGGAGCACTAGAACTAAACATTTAGAAAGTAAGTGTTTTCTTTTAGTGATGGGTTCGAATCCTAGTCTGTCAAGGTTTGTGTCTTGAACTAGTTGAGGTATATGTTCATATTGGCTATAAGAAATCATCATGCTTCAATTTTTGGCTCAGAGTGTCTTGTACTTGATCATTCACTGCGTACTTTCCTTTTTGTACCTCAATTTATTTTACTTTTACCAAGTTTTTTTCCCCCTACTTTTACGCTACTAACACTTATCACTCGACTCCACATATGACATTTTCTGGCATTCTTCCCCCTATTCCCTCTGTACACTTTCTATTACTAACTTTCCTTACACCCACTCATATTTGAACTGAAGAATGTGTTAGGAATACCCAACCATATTCTCTCTATTATTTATGAATCGATTTTTAAAGTTCCTTTCTATTTATCAACTTTTTCTTTTTAAAGAAACACTTTTAATCATCTAAAATCCTCCCATATGCTATACTAAATACAACTTAAAATCAAATTCATGTAATGCATAGTTTTTTCTTCCGCTTTTGACATTTAGGATTGGTCAATTTTAGAGATATTTACTTAGTTACTTCCAACTGCGGTACCTTAAAAATTAATGAAAAATAATAGTTTAACCTAACTTTCAATTTCAATTTTGTTTGGCCATCATTTTTCAGGGCTCTACGCGTTGCTCCGACTGTAAGGGAACAGGTTACCGGGCCAAGTGGTTGGGAGAACCACCCATCTCTAAATAGTTTGATCCGGTGCTTGCCAGGTCTTAGGTCAAACTATTATTTTTCATTATTTTTTCTTAAATCTCATACAGGTCCTAGCACAGTTTTAGTGATGTTATTATTTCACAGTGAAAGTGGAAAAGGATGCTTCCCCTCATGACTTCTATCGTATTTTTGGAGCAGGCTGATTGCTGCTTCTAATGTTTTTTGAAGTAGAGATAAATGTACTATATTTCAGAAATTTAGTAAAATTTGTGCTGTTCCTTCATCAGCTTATATTGATTTGGA

mRNA sequence

ATGGCGAGTTCTGTGTCTTGCAAGCGTGTGATTATGGCGAAATCGATTGACGGAAGAGGACTTGCTTCTACGAGAACAATATTAATCGGTTCCGGATTTTCTCCCAATCGTGTTTTGTTCACCGATTCGAGGCCATTGAGCTCGAGGATTTGTGGCGTGCGAGCTTCCATGGTGGATTCTTATGGAAGCTCCGATTTCGTCAAGAGGATGGAGCAAGCATGGGAGATCTCTCAGGTATTCGCGATCTTTTACACTCCTCGCGGAGGAGCCGATGAATTTCCTATGATTCTTCTGTCATGCCAAGCTAACAATCCTAGATATTTTGACAGCAACCAACGCCTATTTGCTGCTCTTCTTGCAACTCAAAAGGACATGTTGAGTGCAAATGGTGCACAGGAACTGGCTTCTTTATTCTTGGAGATAATATGCTTTGTCAAGTTCCATCCAGAAACACTAGCTGTGTCATTTGTGCTGGCAAGAACTAAACATTTAGAAAGTAAGTGTTTTCTTTTAGTGATGGGTTCGAATCCTAGTCTGTCAAGGGCTCTACGCGTTGCTCCGACTGTAAGGGAACAGGTTACCGGGCCAAGTGGTTGGGAGAACCACCCATCTCTAAATAGTTTGATCCGGTGCTTGCCAGGTCTTAGGTCAAACTATTATTTTTCATTATTTTTTCTTAAATCTCATACAGGTCCTAGCACAGTTTTAGTGATGTTATTATTTCACAGTGAAAGTGGAAAAGGATGCTTCCCCTCATGACTTCTATCGTATTTTTGGAGCAGGCTGATTGCTGCTTCTAATGTTTTTTGAAGTAGAGATAAATGTACTATATTTCAGAAATTTAGTAAAATTTGTGCTGTTCCTTCATCAGCTTATATTGATTTGGA

Coding sequence (CDS)

ATGGCGAGTTCTGTGTCTTGCAAGCGTGTGATTATGGCGAAATCGATTGACGGAAGAGGACTTGCTTCTACGAGAACAATATTAATCGGTTCCGGATTTTCTCCCAATCGTGTTTTGTTCACCGATTCGAGGCCATTGAGCTCGAGGATTTGTGGCGTGCGAGCTTCCATGGTGGATTCTTATGGAAGCTCCGATTTCGTCAAGAGGATGGAGCAAGCATGGGAGATCTCTCAGGTATTCGCGATCTTTTACACTCCTCGCGGAGGAGCCGATGAATTTCCTATGATTCTTCTGTCATGCCAAGCTAACAATCCTAGATATTTTGACAGCAACCAACGCCTATTTGCTGCTCTTCTTGCAACTCAAAAGGACATGTTGAGTGCAAATGGTGCACAGGAACTGGCTTCTTTATTCTTGGAGATAATATGCTTTGTCAAGTTCCATCCAGAAACACTAGCTGTGTCATTTGTGCTGGCAAGAACTAAACATTTAGAAAGTAAGTGTTTTCTTTTAGTGATGGGTTCGAATCCTAGTCTGTCAAGGGCTCTACGCGTTGCTCCGACTGTAAGGGAACAGGTTACCGGGCCAAGTGGTTGGGAGAACCACCCATCTCTAAATAGTTTGATCCGGTGCTTGCCAGGTCTTAGGTCAAACTATTATTTTTCATTATTTTTTCTTAAATCTCATACAGGTCCTAGCACAGTTTTAGTGATGTTATTATTTCACAGTGAAAGTGGAAAAGGATGCTTCCCCTCATGA

Protein sequence

MASSVSCKRVIMAKSIDGRGLASTRTILIGSGFSPNRVLFTDSRPLSSRICGVRASMVDSYGSSDFVKRMEQAWEISQVFAIFYTPRGGADEFPMILLSCQANNPRYFDSNQRLFAALLATQKDMLSANGAQELASLFLEIICFVKFHPETLAVSFVLARTKHLESKCFLLVMGSNPSLSRALRVAPTVREQVTGPSGWENHPSLNSLIRCLPGLRSNYYFSLFFLKSHTGPSTVLVMLLFHSESGKGCFPS
Homology
[Close]
BLAST of Clc05G17830 vs. NCBI nr
Match: KAE8649933.1 (hypothetical protein Csa_011967 [Cucumis sativus])

HSP 1 Score: 183.7 bits (465), Expect = 1.9e-42
Identity = 115/204 (56.37%), Postives = 132/204 (64.71%), Query Frame = 0 

Query: 1   MASSVSCKRVIMAKSIDGRGLASTRTILIGSGFSPNRVLFTDSRPLSSRICGVRASMVDS 60
           M+SSV CK VIMAKSID +G A TRT+ I S F+ NRV   DSR   SRICGVRASMVDS
Sbjct: 1   MSSSVCCKSVIMAKSIDSKGFACTRTVSICSRFAANRVSLIDSRLFKSRICGVRASMVDS 60

Query: 61  YGSSDFVKRMEQAWEISQ----VFAIFYTPRGGADEFPMILLSCQANNP--RYFDSNQRL 120
           YGSSDFVKRMEQAWEISQ    +  +         +F + +   Q ++   ++ + NQ L
Sbjct: 61  YGSSDFVKRMEQAWEISQANVPISFLISDSSVVLWQFRIYIRLHQHDSRIFKFLELNQGL 120

Query: 121 FAALLATQKDMLSANGAQELASLFLEIICFVKFHPETLAVSFVLARTKHLESKCFLLVMG 180
           FAAL ATQ DMLSANG +ELASLFLEIICFVKF PETLAVSFV AR              
Sbjct: 121 FAALPATQMDMLSANGVEELASLFLEIICFVKFLPETLAVSFVPARD------------- 180

Query: 181 SNPSLSRALRVAPTVREQVTGPSG 199
                   L VA TV+ QVTGP+G
Sbjct: 181 --------LGVALTVKAQVTGPNG 183

[Close]
BLAST of Clc05G17830 vs. NCBI nr
Match: KAG7024403.1 (hypothetical protein SDJN02_13217 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 120.6 bits (301), Expect = 2.0e-23
Identity = 63/78 (80.77%), Postives = 68/78 (87.18%), Query Frame = 0 

Query: 1  MASSVSCKRVIMAKSIDGRGLASTRTILIGSGFSPNRVLFTDSRPLSSRICGVRASMVDS 60
          M+SSV  + VI+AKSIDGRG +STR ILIGS F+ NRV FTDSR LSSRICG RASMVDS
Sbjct: 1  MSSSVCFRPVIIAKSIDGRGFSSTRIILIGSEFAANRVSFTDSRLLSSRICGARASMVDS 60

Query: 61 YGSSDFVKRMEQAWEISQ 79
          YGSSDFVKRMEQAWEISQ
Sbjct: 61 YGSSDFVKRMEQAWEISQ 78

[Close]
BLAST of Clc05G17830 vs. NCBI nr
Match: XP_022935899.1 (uncharacterized protein LOC111442664 [Cucurbita moschata])

HSP 1 Score: 120.6 bits (301), Expect = 2.0e-23
Identity = 63/78 (80.77%), Postives = 68/78 (87.18%), Query Frame = 0 

Query: 1  MASSVSCKRVIMAKSIDGRGLASTRTILIGSGFSPNRVLFTDSRPLSSRICGVRASMVDS 60
          M+SSV  + VI+AKSIDGRG +STR ILIGS F+ NRV FTDSR LSSRICG RASMVDS
Sbjct: 1  MSSSVCFRPVIIAKSIDGRGFSSTRIILIGSEFAANRVSFTDSRLLSSRICGARASMVDS 60

Query: 61 YGSSDFVKRMEQAWEISQ 79
          YGSSDFVKRMEQAWEISQ
Sbjct: 61 YGSSDFVKRMEQAWEISQ 78

[Close]
BLAST of Clc05G17830 vs. NCBI nr
Match: XP_023522797.1 (uncharacterized protein LOC111786806, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 120.6 bits (301), Expect = 2.0e-23
Identity = 64/78 (82.05%), Postives = 67/78 (85.90%), Query Frame = 0 

Query: 1  MASSVSCKRVIMAKSIDGRGLASTRTILIGSGFSPNRVLFTDSRPLSSRICGVRASMVDS 60
          M SSV    VIMAKSIDGRG +STR ILIGS F+ NRVLFTDSR LSSRICG RASMV+S
Sbjct: 1  MTSSVCFGPVIMAKSIDGRGFSSTRIILIGSEFAANRVLFTDSRLLSSRICGARASMVNS 60

Query: 61 YGSSDFVKRMEQAWEISQ 79
          YGSSDFVKRMEQAWEISQ
Sbjct: 61 YGSSDFVKRMEQAWEISQ 78

[Close]
BLAST of Clc05G17830 vs. NCBI nr
Match: KAG6591516.1 (hypothetical protein SDJN03_13862, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 120.6 bits (301), Expect = 2.0e-23
Identity = 63/78 (80.77%), Postives = 68/78 (87.18%), Query Frame = 0 

Query: 1  MASSVSCKRVIMAKSIDGRGLASTRTILIGSGFSPNRVLFTDSRPLSSRICGVRASMVDS 60
          M+SSV  + VI+AKSIDGRG +STR ILIGS F+ NRV FTDSR LSSRICG RASMVDS
Sbjct: 1  MSSSVCFRPVIIAKSIDGRGFSSTRIILIGSEFAANRVSFTDSRLLSSRICGARASMVDS 60

Query: 61 YGSSDFVKRMEQAWEISQ 79
          YGSSDFVKRMEQAWEISQ
Sbjct: 61 YGSSDFVKRMEQAWEISQ 78

[Close]
BLAST of Clc05G17830 vs. ExPASy TrEMBL
Match: A0A6J1F6R2 (uncharacterized protein LOC111442664 OS=Cucurbita moschata OX=3662 GN=LOC111442664 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 9.7e-24
Identity = 63/78 (80.77%), Postives = 68/78 (87.18%), Query Frame = 0 

Query: 1  MASSVSCKRVIMAKSIDGRGLASTRTILIGSGFSPNRVLFTDSRPLSSRICGVRASMVDS 60
          M+SSV  + VI+AKSIDGRG +STR ILIGS F+ NRV FTDSR LSSRICG RASMVDS
Sbjct: 1  MSSSVCFRPVIIAKSIDGRGFSSTRIILIGSEFAANRVSFTDSRLLSSRICGARASMVDS 60

Query: 61 YGSSDFVKRMEQAWEISQ 79
          YGSSDFVKRMEQAWEISQ
Sbjct: 61 YGSSDFVKRMEQAWEISQ 78

[Close]
BLAST of Clc05G17830 vs. ExPASy TrEMBL
Match: A0A6J1IHL0 (uncharacterized protein LOC111477293 OS=Cucurbita maxima OX=3661 GN=LOC111477293 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 2.2e-23
Identity = 62/78 (79.49%), Postives = 67/78 (85.90%), Query Frame = 0 

Query: 1  MASSVSCKRVIMAKSIDGRGLASTRTILIGSGFSPNRVLFTDSRPLSSRICGVRASMVDS 60
          M SSV  + VI+AKSIDGRG +STR ILIGS F+ NRV FTDSR LSSRICG RAS+VDS
Sbjct: 1  MTSSVCFRPVILAKSIDGRGFSSTRIILIGSEFAANRVSFTDSRLLSSRICGARASLVDS 60

Query: 61 YGSSDFVKRMEQAWEISQ 79
          YGSSDFVKRMEQAWEISQ
Sbjct: 61 YGSSDFVKRMEQAWEISQ 78

[Close]
BLAST of Clc05G17830 vs. ExPASy TrEMBL
Match: A0A0A0L478 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G651790 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 5.3e-22
Identity = 65/103 (63.11%), Postives = 71/103 (68.93%), Query Frame = 0 

Query: 1   MASSVSCKRVIMAKSIDGRGLASTRTILIGSGFSPNRVLFTDSRPLSSRICGVRASMVDS 60
           M+SSV CK VIMAKSID +G A TRT+ I S F+ NRV   DSR   SRICGVRASMVDS
Sbjct: 1   MSSSVCCKSVIMAKSIDSKGFACTRTVSICSRFAANRVSLIDSRLFKSRICGVRASMVDS 60

Query: 61  YGSSDFVKRMEQAWEISQVFAIFYTPRGGADEFPMILLSCQAN 104
           YGSSDFVKRMEQAWEISQ       PR      P+   SC +N
Sbjct: 61  YGSSDFVKRMEQAWEISQ------QPR------PICCSSCNSN 91

[Close]
BLAST of Clc05G17830 vs. ExPASy TrEMBL
Match: A0A1S3BVK1 (chaperone protein DnaJ OS=Cucumis melo OX=3656 GN=LOC103493730 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.2e-21
Identity = 65/103 (63.11%), Postives = 71/103 (68.93%), Query Frame = 0 

Query: 1   MASSVSCKRVIMAKSIDGRGLASTRTILIGSGFSPNRVLFTDSRPLSSRICGVRASMVDS 60
           M+SSV CK VIMAKSIDG+G  STRT+ I S F+  RV   DSR   SRICGVRASMVDS
Sbjct: 1   MSSSVCCKSVIMAKSIDGKGFPSTRTVSICSRFAAIRVSLIDSRLFKSRICGVRASMVDS 60

Query: 61  YGSSDFVKRMEQAWEISQVFAIFYTPRGGADEFPMILLSCQAN 104
           YGSSDFVKRMEQAWEISQ       PR      P+   SC +N
Sbjct: 61  YGSSDFVKRMEQAWEISQ------QPR------PICCSSCNSN 91

[Close]
BLAST of Clc05G17830 vs. ExPASy TrEMBL
Match: A0A6J1CHM4 (uncharacterized protein LOC111011719 OS=Momordica charantia OX=3673 GN=LOC111011719 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 9.4e-19
Identity = 53/78 (67.95%), Postives = 60/78 (76.92%), Query Frame = 0 

Query: 1  MASSVSCKRVIMAKSIDGRGLASTRTILIGSGFSPNRVLFTDSRPLSSRICGVRASMVDS 60
          MAS V C+ V  AK IDGRG  STR + IG+GF+   + F DS+ LS RICGVRASMVDS
Sbjct: 1  MASCVCCRPVNTAKPIDGRGFVSTRIVPIGAGFAAPHLSFNDSKILSPRICGVRASMVDS 60

Query: 61 YGSSDFVKRMEQAWEISQ 79
          +GSSDF KRMEQAWEISQ
Sbjct: 61 HGSSDFAKRMEQAWEISQ 78

The following BLAST results are available for this feature:
BLAST of Clc05G17830 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8649933.11.9e-4256.37hypothetical protein Csa_011967 [Cucumis sativus][more]
KAG7024403.12.0e-2380.77hypothetical protein SDJN02_13217 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022935899.12.0e-2380.77uncharacterized protein LOC111442664 [Cucurbita moschata][more]
XP_023522797.12.0e-2382.05uncharacterized protein LOC111786806, partial [Cucurbita pepo subsp. pepo][more]
KAG6591516.12.0e-2380.77hypothetical protein SDJN03_13862, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Clc05G17830 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc05G17830 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1F6R29.7e-2480.77uncharacterized protein LOC111442664 OS=Cucurbita moschata OX=3662 GN=LOC1114426... [more]
A0A6J1IHL02.2e-2379.49uncharacterized protein LOC111477293 OS=Cucurbita maxima OX=3661 GN=LOC111477293... [more]
A0A0A0L4785.3e-2263.11Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G651790 PE=4 SV=1[more]
A0A1S3BVK11.2e-2163.11chaperone protein DnaJ OS=Cucumis melo OX=3656 GN=LOC103493730 PE=4 SV=1[more]
A0A6J1CHM49.4e-1967.95uncharacterized protein LOC111011719 OS=Momordica charantia OX=3673 GN=LOC111011... [more]
BLAST of Clc05G17830 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc05G17830.2Clc05G17830.2mRNA