Clc05G17220 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGCTTGTTAGATGTGCGTTTATTTAGTCCATTAACTTCAAAAACATCTCACGAAAGTCCAAACTTCTAATTTTGTATCTAGTATGGTGATTTAAAAAAAAAAAATTAAAAATCTTAATGAAGAAAAAAAAAAGGAAAAAAGAATATTAGAAAAAGAAATAAGGGGGGAAAGCTTGATTGGACCGGCTGCAAGGAGTCGGTTAGGGTAGTTTTCGCAACAGTGCCGCTACTATATAAAGAGCGAAACACCAGCGTTGGCGATTTAGGGCGTAACAGAAGAAACAAGCCGTAGAAGAGGGCTCTCTTTTGTGGAGCGTATTTTATCCTTCTTTTCAATCGCTGTAAGTCCTTAGATCCACCTTCATAACTTCAAGTATGCTTCCCTTTTTCTTGTTTTTCCAGATTTGTTTCCTCCCCTTTTCCCCTTTCTCTTTCGTTTTCTCTATTTTTACTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGTTCCGTAAGTAATTCATTAGGATGTTGTTTTGATGCAGCTCTGTGTGTGTTTTTGTGTGCTGGGGGAGTTGGGTAGTGGTGATTTTTTTTGCATCTGTAAAATCTGATAATTGTTTTTTCTGTTCAGATGGATCGGTACCACAGAGTTGAGAAGCCAAGGGCTGAGACTCCAATTGACGAGAATGAAATTCGGATTACAAGCCAAGGACGGATGCGAAACTATATCACATATGCCATGACCCTACTTCAGGTTTCTCTCTTTCAGATGATTTTCATATGTTTTGACTTTTTTCTGGGGTTAATTGTCTTTCTTAAGCTCTTAATGCGTACTGTGAATCTCCTGATGTGTCTCTCAATGGAATTTTCAAGTTGTGGGTTCTGTTGGTATTCGGAGTGTTAACAATGGTAATTGCGTCGGCTTCATCGAGCTGTATGGTACAAAGAAATTGTTAGCTTATTTTCATTGTGTTGGGTGCAATAATCTGAGTACTTTGGGATTTTTTTCCCGTTGTGTGTGCTGTATTGCAGCGAGAAATATTCTCCTGTTTCACTACTGTGGGATATGTTCTCCCCTGCTCTCGCTGATTGGGGTTCGATAGTGGAACACTACGGGAAGTTGATGTGGTGAAACACATGACAGGGCTATTAATTTTATCAAAATTTGCATTGCTTTCACTTAGTGTATGGCTCTAGGTGGTTTCTAGCTTAAAATATCAAATATTATTATTGTTCTTTCAAAAAAAGAAAAAAAGTATGGATGTCATGTCTGGAAAGCTGTGTATTATCATTATGAAACAATATGATTATACTAGAGTGCAAAGAAATCTTGTCCGTAAATATTTATGAATCATAGAAGGCACTGCACGTTGAGATGAAAATACGGACGTCAAATTCCCTTTTTTCCCTTTTTATGCTAATTAATTACTCAATTCACGGTAGTATATTATTTATGATACACTTATTGGATGGTAACATTTTCATTAATTTGACATTTTTGTAGTTGTTTATAACCTACTATTGTCCATAAATTATGCAGGAAAAAGGTTCTAATGAAATTGTTTTCAAAGCAATGGGGAGGGCTATAAACAAGACTGTGACTATTGTGGAATTAATCAAGGTTTGCTGTAATAGTTCATGTTGCTGATGCTGACCCACTTGATTACTTTGAGATTGGGCTTGACAATATATTTGTTGGTAAATGCAGAGGCGAATTGTAGGTCTTCATCAGAATACCTCAATTGGCTCCACAGACATCACTGATACATGGGAGCCCTTGGAGGAAGGCCTTCTTCCGTAAGAGTACTTTAAACTATACATCAAGCAAGGATTATTTAATCCAGCCTTTAGTTTTATATAAATTATTATATTCATTATTGCAATGCACGAGTCTTTAACATGTAGAAAATTTCGTAGAGTATTGGGTTTTGGTTTCACAAAGTTATGTAATTGTTGTTACAGATTGGAAACAACAAGGCATGTCTCGATGATTGTGATAACCCTTTCAAAGAAGGAATTAAATAAATCCTCTGTGGGGTGAGTCCTTACTTGCTTCTAATGTCTCTCGAAGGTGTTTTTTCAAAATTGAAAATAAATTATGTTCTATGAAATGATGGACTGTTGAAAGGATGAAGATCTCATTTTATTTATTTTATGATGGTCTCTGGCAGTAAATATAAACAAAACCTTAAGCTCATCTGTTCTGTCAGGTTCAGTTGTTAGAAATTTTCAGATATTGAGCAGGGTTTTGCTTATGTAGAATCTGTGGATTGAATAATTGTTACTAATAATTCAAAAGTTGTCTTGGTCTTTGCTTAAAGAGTCTTTAGATTTTTGTCCTCATCTCTGTGAATGGTGGAAACTCTCTTCTACAAATGAGCAATTGTCTCATAAGTTACTTTTGGCTCAGGTATCAGCCTCCACTTCCTGCGGAGCTGGTGAAAACATTTGTAGAGTATGACTACGAGGGAGGTATTGACCTGTCCTACCATATTCTTTTGAAAAATTCATTATAAAAAAGTTTGCATTGCAAAGTTGCAATTGGTTGTTTTTGCATTCTGCAGAAGGCTCACCTCACGATCAGGGTCCAGGACGAGGTAGAGGTCGGGGCCGCAATGGCAGAGGAAGGTCTAGGGGTAGAGGTATGCAGAGTTGGATTTCGTCTATTGTTCTCAAGCCTTTGATCATGTTAATGAATATGGAAGAGTAGCTTTTATGGCTAATGAGAGACTTCCAGTATTGGAATCTTGTTGTAATTCATTCAATTTCTTGTCAAGGAGAGCATGCCCTCGTAACAGTTCTTTTTTTTTTTTTTTGGTTTTAAAATTGTACTTTATAGGACCCCCAGGTAATGGCTTTGTAGCTAATGAATATGATGATGGAGATTGGGACCGTAATAGGGGTGGTAATGGAAGAGGGAGGGGTCGAGGGAGGGGTGGTGGTAATTTCCGTGGACGTGGAAGAGGAGGATACAATGGACCTCCATTTGATTTACAGCAAGATGGAGGATACAACCAAGACTTACCACCTCAAGGCCGTGGTATTTTCTTATTTCCTTTTTCAGTATGTTTCATTTAGTTGATCTTTGATTAGCCTATTCAGCAGGGATGTTCTGATTATGGTCATTGTTCTTCGATGCTTATTGAAGTCGGGGTGTCCTTTTCTCTTATACATTAATACAATTGAATGTTCTTTGTGCGAGTTATTGAATTGAAACTATCTTGTCTCTGATGTTGAAGTGGTTTTCATTTTCACCTTTTTGTATAGACTTAGACCCATGAAAAGTTCTAGTCAGCTTGATATTTCAACTGCCACCCTTCTTTTTGGTCTCAGTTGAATTGGTTGTATTTTTCAGGGCGTGGACGCGGAAGGGGCGGGTATCGCGGAAGGGGCCGTGGTTTCAGGACTAATGGAGGGCCGATCCAAGCAGCTGCATGAGGTGCTGAAAGGTTAAAATCCTAATTTTATGCAATTATGATGGATGAGTCCTTAATGTATCATTAGGATTTTCTCTTTTAGTTGCCATTTGCAAAGGACAACTATATTAACAGTAGGAATTTGGCTTTGTTTTTTTTTTTTTTTT ATGCTTGGGGGAAAGCTTGATTGGACCGGCTGCAAGGAGTCGGTTAGGGTAGTTTTCGCAACAGTGCCGCTACTATATAAAGAGCGAAACACCAGCATGGATCGGTACCACAGAGTTGAGAAGCCAAGGGCTGAGACTCCAATTGACGAGAATGAAATTCGGATTACAAGCCAAGGACGGATGCGAAACTATATCACATATGCCATGACCCTACTTCAGGAAAAAGGTTCTAATGAAATTGTTTTCAAAGCAATGGGGAGGGCTATAAACAAGACTGTGACTATTGTGGAATTAATCAAGAGGCGAATTGTAGGTCTTCATCAGAATACCTCAATTGGCTCCACAGACATCACTGATACATGGGAGCCCTTGGAGGAAGGCCTTCTTCCATTGGAAACAACAAGGCATGTCTCGATGATTGTGATAACCCTTTCAAAGAAGGAATTAAATAAATCCTCTGTGGGGTATCAGCCTCCACTTCCTGCGGAGCTGGTGAAAACATTTGTAGAGTATGACTACGAGGGAGAAGGCTCACCTCACGATCAGGGTCCAGGACGAGGTAGAGGTCGGGGCCGCAATGGCAGAGGAAGGTCTAGGGGTAGAGGACCCCCAGGTAATGGCTTTGTAGCTAATGAATATGATGATGGAGATTGGGACCGTAATAGGGGTGGTAATGGAAGAGGGAGGGGTCGAGGGAGGGGTGGTGGTAATTTCCGTGGACGTGGAAGAGGAGGATACAATGGACCTCCATTTGATTTACAGCAAGATGGAGGATACAACCAAGACTTACCACCTCAAGGCCGTGGTATTTTCTTATTTCCTTTTTCAGGCGTGGACGCGGAAGGGGCGGGTATCGCGGAAGGGGCCGTGGTTTCAGGACTAATGGAGGGCCGATCCAAGCAGCTGCATGAGGTGCTGAAAGGTTAAAATCCTAATTTTATGCAATTATGATGGATGAGTCCTTAATGTATCATTAGGATTTTCTCTTTTAGTTGCCATTTGCAAAGGACAACTATATTAACAGTAGGAATTTGGCTTTGTTTTTTTTTTTTTTTT ATGCTTGGGGGAAAGCTTGATTGGACCGGCTGCAAGGAGTCGGTTAGGGTAGTTTTCGCAACAGTGCCGCTACTATATAAAGAGCGAAACACCAGCATGGATCGGTACCACAGAGTTGAGAAGCCAAGGGCTGAGACTCCAATTGACGAGAATGAAATTCGGATTACAAGCCAAGGACGGATGCGAAACTATATCACATATGCCATGACCCTACTTCAGGAAAAAGGTTCTAATGAAATTGTTTTCAAAGCAATGGGGAGGGCTATAAACAAGACTGTGACTATTGTGGAATTAATCAAGAGGCGAATTGTAGGTCTTCATCAGAATACCTCAATTGGCTCCACAGACATCACTGATACATGGGAGCCCTTGGAGGAAGGCCTTCTTCCATTGGAAACAACAAGGCATGTCTCGATGATTGTGATAACCCTTTCAAAGAAGGAATTAAATAAATCCTCTGTGGGGTATCAGCCTCCACTTCCTGCGGAGCTGGTGAAAACATTTGTAGAGTATGACTACGAGGGAGAAGGCTCACCTCACGATCAGGGTCCAGGACGAGGTAGAGGTCGGGGCCGCAATGGCAGAGGAAGGTCTAGGGGTAGAGGACCCCCAGGTAATGGCTTTGTAGCTAATGAATATGATGATGGAGATTGGGACCGTAATAGGGGTGGTAATGGAAGAGGGAGGGGTCGAGGGAGGGGTGGTGGTAATTTCCGTGGACGTGGAAGAGGAGGATACAATGGACCTCCATTTGATTTACAGCAAGATGGAGGATACAACCAAGACTTACCACCTCAAGGCCGTGGTATTTTCTTATTTCCTTTTTCAGGCGTGGACGCGGAAGGGGCGGGTATCGCGGAAGGGGCCGTGGTTTCAGGACTAATGGAGGGCCGATCCAAGCAGCTGCATGAGGTGCTGAAAGGTTAA MLGGKLDWTGCKESVRVVFATVPLLYKERNTSMDRYHRVEKPRAETPIDENEIRITSQGRMRNYITYAMTLLQEKGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTSIGSTDITDTWEPLEEGLLPLETTRHVSMIVITLSKKELNKSSVGYQPPLPAELVKTFVEYDYEGEGSPHDQGPGRGRGRGRNGRGRSRGRGPPGNGFVANEYDDGDWDRNRGGNGRGRGRGRGGGNFRGRGRGGYNGPPFDLQQDGGYNQDLPPQGRGIFLFPFSGVDAEGAGIAEGAVVSGLMEGRSKQLHEVLKG Homology
BLAST of Clc05G17220 vs. NCBI nr
Match: XP_038900199.1 (ribonuclease P protein subunit p25-like protein isoform X1 [Benincasa hispida]) HSP 1 Score: 458.4 bits (1178), Expect = 5.0e-125 Identity = 234/237 (98.73%), Postives = 234/237 (98.73%), Query Frame = 0
BLAST of Clc05G17220 vs. NCBI nr
Match: KAG6591254.1 (Ribonuclease P protein subunit p25-like protein, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 457.2 bits (1175), Expect = 1.1e-124 Identity = 232/238 (97.48%), Postives = 234/238 (98.32%), Query Frame = 0
BLAST of Clc05G17220 vs. NCBI nr
Match: XP_038900200.1 (ribonuclease P protein subunit p25-like protein isoform X2 [Benincasa hispida]) HSP 1 Score: 456.4 bits (1173), Expect = 1.9e-124 Identity = 233/236 (98.73%), Postives = 233/236 (98.73%), Query Frame = 0
BLAST of Clc05G17220 vs. NCBI nr
Match: XP_022937288.1 (ribonuclease P protein subunit p25-like protein [Cucurbita moschata] >XP_022937289.1 ribonuclease P protein subunit p25-like protein [Cucurbita moschata] >XP_022937290.1 ribonuclease P protein subunit p25-like protein [Cucurbita moschata] >XP_022937291.1 ribonuclease P protein subunit p25-like protein [Cucurbita moschata] >XP_023535466.1 ribonuclease P protein subunit p25-like protein [Cucurbita pepo subsp. pepo] >XP_023535467.1 ribonuclease P protein subunit p25-like protein [Cucurbita pepo subsp. pepo] >XP_023535469.1 ribonuclease P protein subunit p25-like protein [Cucurbita pepo subsp. pepo] >KAG7024137.1 Ribonuclease P protein subunit p25-like protein [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 456.4 bits (1173), Expect = 1.9e-124 Identity = 232/237 (97.89%), Postives = 233/237 (98.31%), Query Frame = 0
BLAST of Clc05G17220 vs. NCBI nr
Match: XP_004136371.1 (ribonuclease P protein subunit p25-like protein [Cucumis sativus] >KAE8651349.1 hypothetical protein Csa_002424 [Cucumis sativus]) HSP 1 Score: 453.8 bits (1166), Expect = 1.2e-123 Identity = 234/238 (98.32%), Postives = 234/238 (98.32%), Query Frame = 0
BLAST of Clc05G17220 vs. ExPASy Swiss-Prot
Match: Q99JH1 (Ribonuclease P protein subunit p25-like protein OS=Mus musculus OX=10090 GN=Rpp25l PE=1 SV=1) HSP 1 Score: 85.5 bits (210), Expect = 1.1e-15 Identity = 47/136 (34.56%), Postives = 70/136 (51.47%), Query Frame = 0
BLAST of Clc05G17220 vs. ExPASy Swiss-Prot
Match: Q8N5L8 (Ribonuclease P protein subunit p25-like protein OS=Homo sapiens OX=9606 GN=RPP25L PE=1 SV=1) HSP 1 Score: 84.0 bits (206), Expect = 3.3e-15 Identity = 43/120 (35.83%), Postives = 65/120 (54.17%), Query Frame = 0
BLAST of Clc05G17220 vs. ExPASy Swiss-Prot
Match: Q2KIR4 (Ribonuclease P protein subunit p25-like protein OS=Bos taurus OX=9913 GN=RPP25L PE=2 SV=1) HSP 1 Score: 75.5 bits (184), Expect = 1.2e-12 Identity = 50/160 (31.25%), Postives = 76/160 (47.50%), Query Frame = 0
BLAST of Clc05G17220 vs. ExPASy Swiss-Prot
Match: Q91WE3 (Ribonuclease P protein subunit p25 OS=Mus musculus OX=10090 GN=Rpp25 PE=2 SV=1) HSP 1 Score: 75.5 bits (184), Expect = 1.2e-12 Identity = 39/117 (33.33%), Postives = 60/117 (51.28%), Query Frame = 0
BLAST of Clc05G17220 vs. ExPASy Swiss-Prot
Match: Q5PPN2 (Ribonuclease P protein subunit p25 OS=Rattus norvegicus OX=10116 GN=Rpp25 PE=2 SV=1) HSP 1 Score: 75.5 bits (184), Expect = 1.2e-12 Identity = 39/117 (33.33%), Postives = 60/117 (51.28%), Query Frame = 0
BLAST of Clc05G17220 vs. ExPASy TrEMBL
Match: A0A0A0LJ75 (Alba domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G874340 PE=4 SV=1) HSP 1 Score: 509.6 bits (1311), Expect = 9.1e-141 Identity = 261/268 (97.39%), Postives = 262/268 (97.76%), Query Frame = 0
BLAST of Clc05G17220 vs. ExPASy TrEMBL
Match: A0A6J1F9Y5 (ribonuclease P protein subunit p25-like protein OS=Cucurbita moschata OX=3662 GN=LOC111443618 PE=4 SV=1) HSP 1 Score: 456.4 bits (1173), Expect = 9.1e-125 Identity = 232/237 (97.89%), Postives = 233/237 (98.31%), Query Frame = 0
BLAST of Clc05G17220 vs. ExPASy TrEMBL
Match: A0A6J1ILQ2 (ribonuclease P protein subunit p25-like protein isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111476415 PE=4 SV=1) HSP 1 Score: 453.0 bits (1164), Expect = 1.0e-123 Identity = 231/237 (97.47%), Postives = 232/237 (97.89%), Query Frame = 0
BLAST of Clc05G17220 vs. ExPASy TrEMBL
Match: A0A6J1IFA1 (ribonuclease P protein subunit p25-like protein isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111476415 PE=4 SV=1) HSP 1 Score: 453.0 bits (1164), Expect = 1.0e-123 Identity = 231/237 (97.47%), Postives = 232/237 (97.89%), Query Frame = 0
BLAST of Clc05G17220 vs. ExPASy TrEMBL
Match: A0A6J1CEZ6 (ribonuclease P protein subunit p25-like protein OS=Momordica charantia OX=3673 GN=LOC111010885 PE=4 SV=1) HSP 1 Score: 452.2 bits (1162), Expect = 1.7e-123 Identity = 231/237 (97.47%), Postives = 233/237 (98.31%), Query Frame = 0
BLAST of Clc05G17220 vs. TAIR 10
Match: AT1G76010.1 (Alba DNA/RNA-binding protein ) HSP 1 Score: 308.5 bits (789), Expect = 5.9e-84 Identity = 178/241 (73.86%), Postives = 192/241 (79.67%), Query Frame = 0
BLAST of Clc05G17220 vs. TAIR 10
Match: AT1G20220.1 (Alba DNA/RNA-binding protein ) HSP 1 Score: 288.5 bits (737), Expect = 6.3e-78 Identity = 184/308 (59.74%), Postives = 202/308 (65.58%), Query Frame = 0
BLAST of Clc05G17220 vs. TAIR 10
Match: AT3G07030.1 (Alba DNA/RNA-binding protein ) HSP 1 Score: 149.4 bits (376), Expect = 4.6e-36 Identity = 116/277 (41.88%), Postives = 139/277 (50.18%), Query Frame = 0
BLAST of Clc05G17220 vs. TAIR 10
Match: AT1G31290.1 (ARGONAUTE 3 ) HSP 1 Score: 47.4 bits (111), Expect = 2.5e-05 Identity = 51/134 (38.06%), Postives = 64/134 (47.76%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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