Clc05G17120 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc05G17120
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Plastocyanin
Location	ClcChr05: 25591156 .. 25591659 (+)
RNA-Seq Expression	Clc05G17120
Synteny	Clc05G17120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGCCGTCACCTCCGCCGCCGTTGCCATCCCCTCCTTCACCGGCCTCAAGTCCGCCGGCGCCACATCAAAACCCACCGCGGCCGTCCGCGTCTCCTCCCCTGCAACCCCAAAGCTGAGCATGAGAGCATCTCTGAAGGACGTGGGCGTGGCCGTGGCAGCCACCGCCGCCACCGCCCTGCTGGCCTCAAACGCCATGGCCATCGAGATCTTGCTGGGCGGCAACGACGGATCTCTGGCGTTCGTTCCGAACGATTTCTCGGTGGCGTCGGGTGAGAAAATCGTGTTCAAGAACAACGCGGGATTCCCACACAACGTGGTGTTCGATGAGGACGAAATCCCGAGCGGAGTGGACGCGGGAAAGATCTCGATGAGTGAGGAAGATCTTCTGAATGCTCCCGGCCAGGTGTACGAAGTCCAGCTAACTGAAAAAGGAAGCTACTCTTTCTACTGTTCGCCCCATCAAGGAGCTGGAATGGTCGGAAAGGTCACCGTTAACTGA

mRNA sequence

ATGGCCGCCGTCACCTCCGCCGCCGTTGCCATCCCCTCCTTCACCGGCCTCAAGTCCGCCGGCGCCACATCAAAACCCACCGCGGCCGTCCGCGTCTCCTCCCCTGCAACCCCAAAGCTGAGCATGAGAGCATCTCTGAAGGACGTGGGCGTGGCCGTGGCAGCCACCGCCGCCACCGCCCTGCTGGCCTCAAACGCCATGGCCATCGAGATCTTGCTGGGCGGCAACGACGGATCTCTGGCGTTCGTTCCGAACGATTTCTCGGTGGCGTCGGGTGAGAAAATCGTGTTCAAGAACAACGCGGGATTCCCACACAACGTGGTGTTCGATGAGGACGAAATCCCGAGCGGAGTGGACGCGGGAAAGATCTCGATGAGTGAGGAAGATCTTCTGAATGCTCCCGGCCAGGTGTACGAAGTCCAGCTAACTGAAAAAGGAAGCTACTCTTTCTACTGTTCGCCCCATCAAGGAGCTGGAATGGTCGGAAAGGTCACCGTTAACTGA

Coding sequence (CDS)

ATGGCCGCCGTCACCTCCGCCGCCGTTGCCATCCCCTCCTTCACCGGCCTCAAGTCCGCCGGCGCCACATCAAAACCCACCGCGGCCGTCCGCGTCTCCTCCCCTGCAACCCCAAAGCTGAGCATGAGAGCATCTCTGAAGGACGTGGGCGTGGCCGTGGCAGCCACCGCCGCCACCGCCCTGCTGGCCTCAAACGCCATGGCCATCGAGATCTTGCTGGGCGGCAACGACGGATCTCTGGCGTTCGTTCCGAACGATTTCTCGGTGGCGTCGGGTGAGAAAATCGTGTTCAAGAACAACGCGGGATTCCCACACAACGTGGTGTTCGATGAGGACGAAATCCCGAGCGGAGTGGACGCGGGAAAGATCTCGATGAGTGAGGAAGATCTTCTGAATGCTCCCGGCCAGGTGTACGAAGTCCAGCTAACTGAAAAAGGAAGCTACTCTTTCTACTGTTCGCCCCATCAAGGAGCTGGAATGGTCGGAAAGGTCACCGTTAACTGA

Protein sequence

MAAVTSAAVAIPSFTGLKSAGATSKPTAAVRVSSPATPKLSMRASLKDVGVAVAATAATALLASNAMAIEILLGGNDGSLAFVPNDFSVASGEKIVFKNNAGFPHNVVFDEDEIPSGVDAGKISMSEEDLLNAPGQVYEVQLTEKGSYSFYCSPHQGAGMVGKVTVN

Homology

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BLAST of Clc05G17120 vs. NCBI nr
Match: XP_038896134.1 (plastocyanin [Benincasa hispida])

HSP 1 Score: 290.0 bits (741), Expect = 1.3e-74
Identity = 154/167 (92.22%), Postives = 161/167 (96.41%), Query Frame = 0


Query: 1   MAAVTSAAVAIPSFTGLKSAGATSKPTAAVRVSSPATPKLSMRASLKDVGVAVAATAATA 60
           MA VTS AVAIPSFTGLKS+GA SKPTAAVR+ SPA PK S+RASLKDVGVAVAATAATA
Sbjct: 1   MATVTSPAVAIPSFTGLKSSGAASKPTAAVRIPSPAVPKHSIRASLKDVGVAVAATAATA 60

Query: 61  LLASNAMAIEILLGGNDGSLAFVPNDFSVASGEKIVFKNNAGFPHNVVFDEDEIPSGVDA 120
           LLASNAMAIEILLGG+DGSLAFVPN+FSVASGEKIVFKNNAGFPHNVVFDEDEIPSGVDA
Sbjct: 61  LLASNAMAIEILLGGDDGSLAFVPNNFSVASGEKIVFKNNAGFPHNVVFDEDEIPSGVDA 120

Query: 121 GKISMSEEDLLNAPGQVYEVQLTEKGSYSFYCSPHQGAGMVGKVTVN 168
           GKISM+EEDLLNAPG+VYEVQLTEKGSYSFYCSPHQGAGMVGKVTVN
Sbjct: 121 GKISMNEEDLLNAPGEVYEVQLTEKGSYSFYCSPHQGAGMVGKVTVN 167

[Close]

BLAST of Clc05G17120 vs. NCBI nr
Match: XP_022937324.1 (plastocyanin [Cucurbita moschata])

HSP 1 Score: 283.5 bits (724), Expect = 1.2e-72
Identity = 147/167 (88.02%), Postives = 159/167 (95.21%), Query Frame = 0


Query: 1   MAAVTSAAVAIPSFTGLKSAGATSKPTAAVRVSSPATPKLSMRASLKDVGVAVAATAATA 60
           MA VTSA VAIP+FTGLKS    SKPTAAVRVSSPA PKL++RASLKD+GVAVAATAA+A
Sbjct: 1   MATVTSATVAIPTFTGLKSPATASKPTAAVRVSSPAVPKLTVRASLKDIGVAVAATAASA 60

Query: 61  LLASNAMAIEILLGGNDGSLAFVPNDFSVASGEKIVFKNNAGFPHNVVFDEDEIPSGVDA 120
           LLASNA+AIE+LLGG+DGSLAF+PNDFSVA+GEKIVFKNNAGFPHNVVFDEDEIPSGVDA
Sbjct: 61  LLASNALAIEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFPHNVVFDEDEIPSGVDA 120

Query: 121 GKISMSEEDLLNAPGQVYEVQLTEKGSYSFYCSPHQGAGMVGKVTVN 168
           GKISM+EEDLLNAPG+VYEV LTEKGSYSFYCSPHQGAGMVGKVTVN
Sbjct: 121 GKISMNEEDLLNAPGEVYEVNLTEKGSYSFYCSPHQGAGMVGKVTVN 167

[Close]

BLAST of Clc05G17120 vs. NCBI nr
Match: XP_023534891.1 (plastocyanin [Cucurbita pepo subsp. pepo])

HSP 1 Score: 282.7 bits (722), Expect = 2.0e-72
Identity = 148/167 (88.62%), Postives = 159/167 (95.21%), Query Frame = 0


Query: 1   MAAVTSAAVAIPSFTGLKSAGATSKPTAAVRVSSPATPKLSMRASLKDVGVAVAATAATA 60
           MA VTSA VAIPSFTGLKS+   SK TAAVRVSSPA PKL++RASLKDVGVAVAATAA+A
Sbjct: 1   MATVTSATVAIPSFTGLKSSATASKSTAAVRVSSPAVPKLTVRASLKDVGVAVAATAASA 60

Query: 61  LLASNAMAIEILLGGNDGSLAFVPNDFSVASGEKIVFKNNAGFPHNVVFDEDEIPSGVDA 120
           LLASNA+AIE+LLGG+DGSLAF+PNDFSVA+GEKIVFKNNAGFPHNVVFDEDEIPSGVDA
Sbjct: 61  LLASNALAIEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFPHNVVFDEDEIPSGVDA 120

Query: 121 GKISMSEEDLLNAPGQVYEVQLTEKGSYSFYCSPHQGAGMVGKVTVN 168
           GKISM+EEDLLNAPG+VYEV LTEKGSYSFYCSPHQGAGMVGKVTVN
Sbjct: 121 GKISMNEEDLLNAPGEVYEVNLTEKGSYSFYCSPHQGAGMVGKVTVN 167

[Close]

BLAST of Clc05G17120 vs. NCBI nr
Match: KAA0063319.1 (plastocyanin [Cucumis melo var. makuwa])

HSP 1 Score: 281.6 bits (719), Expect = 4.5e-72
Identity = 150/167 (89.82%), Postives = 164/167 (98.20%), Query Frame = 0


Query: 1   MAAVTSAAVAIPSFTGLKSAGATSKPTAAVRVSSPATPKLSMRASLKDVGVAVAATAATA 60
           MAAVTSAAVAIPSFTGLKS+ ++SKPT+A+R+ SPA+PKLS+RASLKDVGVAVAATAA+A
Sbjct: 1   MAAVTSAAVAIPSFTGLKSS-SSSKPTSAIRLPSPASPKLSVRASLKDVGVAVAATAASA 60

Query: 61  LLASNAMAIEILLGGNDGSLAFVPNDFSVASGEKIVFKNNAGFPHNVVFDEDEIPSGVDA 120
           LLASNAMAIEILLGG+DGSLAFVPN+F+VASGEKIVFKNNAGFPHNVVFDEDEIPSGVDA
Sbjct: 61  LLASNAMAIEILLGGDDGSLAFVPNNFTVASGEKIVFKNNAGFPHNVVFDEDEIPSGVDA 120

Query: 121 GKISMSEEDLLNAPGQVYEVQLTEKGSYSFYCSPHQGAGMVGKVTVN 168
           GKISM EE+LLNAPG+VYEVQLTEKGSYSFYCSPHQGAGMVGKVTVN
Sbjct: 121 GKISMDEENLLNAPGEVYEVQLTEKGSYSFYCSPHQGAGMVGKVTVN 166

[Close]

BLAST of Clc05G17120 vs. NCBI nr
Match: KAG6591248.1 (Plastocyanin major isoform, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 281.6 bits (719), Expect = 4.5e-72
Identity = 147/167 (88.02%), Postives = 159/167 (95.21%), Query Frame = 0


Query: 1   MAAVTSAAVAIPSFTGLKSAGATSKPTAAVRVSSPATPKLSMRASLKDVGVAVAATAATA 60
           MA VTSA VAIPSFTGLKS+   SK T+AVRVSSPA PKL++RASLKDVGVAVAATAA+A
Sbjct: 1   MATVTSATVAIPSFTGLKSSATASKSTSAVRVSSPAVPKLTVRASLKDVGVAVAATAASA 60

Query: 61  LLASNAMAIEILLGGNDGSLAFVPNDFSVASGEKIVFKNNAGFPHNVVFDEDEIPSGVDA 120
           LLASNA+AIE+LLGG+DGSLAF+PNDFSVA+GEKIVFKNNAGFPHNVVFDEDEIPSGVDA
Sbjct: 61  LLASNALAIEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFPHNVVFDEDEIPSGVDA 120

Query: 121 GKISMSEEDLLNAPGQVYEVQLTEKGSYSFYCSPHQGAGMVGKVTVN 168
           GKISM+EEDLLNAPG+VYEV LTEKGSYSFYCSPHQGAGMVGKVTVN
Sbjct: 121 GKISMNEEDLLNAPGEVYEVNLTEKGSYSFYCSPHQGAGMVGKVTVN 167

[Close]

BLAST of Clc05G17120 vs. ExPASy Swiss-Prot
Match: P00289 (Plastocyanin, chloroplastic OS=Spinacia oleracea OX=3562 GN=PETE PE=1 SV=2)

HSP 1 Score: 241.9 bits (616), Expect = 5.2e-63
Identity = 127/168 (75.60%), Postives = 146/168 (86.90%), Query Frame = 0


Query: 1   MAAV-TSAAVAIPSFTGLKSAGATSKPTAAVRVSSPATPKLSMRASLKDVGVAVAATAAT 60
           MA V +SAAVA+PSFTGLK++G+    TA +  ++ A P+LS++ASLK+VG AV ATAA 
Sbjct: 1   MATVASSAAVAVPSFTGLKASGSIKPTTAKIIPTTTAVPRLSVKASLKNVGAAVVATAAA 60

Query: 61  ALLASNAMAIEILLGGNDGSLAFVPNDFSVASGEKIVFKNNAGFPHNVVFDEDEIPSGVD 120
            LLA NAMA+E+LLGG DGSLAF+P DFSVASGE+IVFKNNAGFPHNVVFDEDEIPSGVD
Sbjct: 61  GLLAGNAMAVEVLLGGGDGSLAFLPGDFSVASGEEIVFKNNAGFPHNVVFDEDEIPSGVD 120

Query: 121 AGKISMSEEDLLNAPGQVYEVQLTEKGSYSFYCSPHQGAGMVGKVTVN 168
           A KISMSEEDLLNAPG+ Y+V LTEKG+Y FYCSPHQGAGMVGKVTVN
Sbjct: 121 AAKISMSEEDLLNAPGETYKVTLTEKGTYKFYCSPHQGAGMVGKVTVN 168

[Close]

BLAST of Clc05G17120 vs. ExPASy Swiss-Prot
Match: P00299 (Plastocyanin A, chloroplastic OS=Populus nigra OX=3691 GN=PETE PE=1 SV=2)

HSP 1 Score: 236.1 bits (601), Expect = 2.9e-61
Identity = 122/168 (72.62%), Postives = 148/168 (88.10%), Query Frame = 0


Query: 1   MAAVTSAAVAIPSFTGLKSAGAT-SKPTAAVRVSSPATPKLSMRASLKDVGVAVAATAAT 60
           MA VTSAAV+IPSFTGLK+  A+ +K +A+ +VS+   P+LS++AS+KDVG AV ATAA+
Sbjct: 1   MATVTSAAVSIPSFTGLKAGSASNAKVSASAKVSASPLPRLSIKASMKDVGAAVVATAAS 60

Query: 61  ALLASNAMAIEILLGGNDGSLAFVPNDFSVASGEKIVFKNNAGFPHNVVFDEDEIPSGVD 120
           A++ASNAMAI++LLG +DGSLAFVP++FS++ GEKIVFKNNAGFPHN+VFDED IPSGVD
Sbjct: 61  AMIASNAMAIDVLLGADDGSLAFVPSEFSISPGEKIVFKNNAGFPHNIVFDEDSIPSGVD 120

Query: 121 AGKISMSEEDLLNAPGQVYEVQLTEKGSYSFYCSPHQGAGMVGKVTVN 168
           A KISMSEEDLLNA G+ +EV L+ KG YSFYCSPHQGAGMVGKVTVN
Sbjct: 121 ASKISMSEEDLLNAKGETFEVALSNKGEYSFYCSPHQGAGMVGKVTVN 168

[Close]

BLAST of Clc05G17120 vs. ExPASy Swiss-Prot
Match: P11970 (Plastocyanin B, chloroplastic OS=Populus nigra OX=3691 GN=PETE PE=1 SV=2)

HSP 1 Score: 232.6 bits (592), Expect = 3.2e-60
Identity = 120/168 (71.43%), Postives = 149/168 (88.69%), Query Frame = 0


Query: 1   MAAVTSAAVAIPSFTGLKSAGAT-SKPTAAVRVSSPATPKLSMRASLKDVGVAVAATAAT 60
           MAAVTSAAV+IPSFTGLK+A A+ +K +A+ +VS+   P+LS++ASLK+VG AV ATAA+
Sbjct: 1   MAAVTSAAVSIPSFTGLKAASASNAKVSASAKVSASPLPRLSIKASLKEVGAAVVATAAS 60

Query: 61  ALLASNAMAIEILLGGNDGSLAFVPNDFSVASGEKIVFKNNAGFPHNVVFDEDEIPSGVD 120
           A++ASNAMA+++LLG +DGSLAFVP++FSV +GEKIVFKNNAGFPHNV+FDED +PSGVD
Sbjct: 61  AMIASNAMAVDVLLGADDGSLAFVPSEFSVPAGEKIVFKNNAGFPHNVLFDEDAVPSGVD 120

Query: 121 AGKISMSEEDLLNAPGQVYEVQLTEKGSYSFYCSPHQGAGMVGKVTVN 168
             KISMSEEDLLNA G+ +EV L++KG Y+FYCSPHQGAGMVGKV VN
Sbjct: 121 VSKISMSEEDLLNAKGETFEVALSDKGEYTFYCSPHQGAGMVGKVIVN 168

[Close]

BLAST of Clc05G17120 vs. ExPASy Swiss-Prot
Match: P42699 (Plastocyanin major isoform, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DRT112 PE=1 SV=2)

HSP 1 Score: 231.9 bits (590), Expect = 5.4e-60
Identity = 118/167 (70.66%), Postives = 140/167 (83.83%), Query Frame = 0


Query: 1   MAAVTSAAVAIPSFTGLKSAGATSKPTAAVRVSSPATPKLSMRASLKDVGVAVAATAATA 60
           MA+VTSA VAIPSFTGLK++   S  T  ++ ++ A+PKL++++SLK+ GVA  A AA+ 
Sbjct: 1   MASVTSATVAIPSFTGLKASTIKSSATVRIQTAAVASPKLTVKSSLKNFGVAAVAAAASI 60

Query: 61  LLASNAMAIEILLGGNDGSLAFVPNDFSVASGEKIVFKNNAGFPHNVVFDEDEIPSGVDA 120
            LA NAMAIE+LLGG DGSLAF+PNDFS+A GEKIVFKNNAG+PHNVVFDEDEIPSGVD 
Sbjct: 61  ALAGNAMAIEVLLGGGDGSLAFIPNDFSIAKGEKIVFKNNAGYPHNVVFDEDEIPSGVDV 120

Query: 121 GKISMSEEDLLNAPGQVYEVQLTEKGSYSFYCSPHQGAGMVGKVTVN 168
            KISM E+DLLN  G+ YEV LTE G+YSFYC+PHQGAGMVGKVTVN
Sbjct: 121 AKISMDEQDLLNGAGETYEVALTEPGTYSFYCAPHQGAGMVGKVTVN 167

[Close]

BLAST of Clc05G17120 vs. ExPASy Swiss-Prot
Match: P17340 (Plastocyanin, chloroplastic OS=Solanum lycopersicum OX=4081 GN=PETE PE=2 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 9.2e-60
Identity = 120/170 (70.59%), Postives = 146/170 (85.88%), Query Frame = 0


Query: 1   MAAVTSAAVAIPSFTGLKSAGATSKPT---AAVRVSSPATPKLSMRASLKDVGVAVAATA 60
           MA VTSAAVAIPSFTGLK+  ++S      A+ +V++    +L+++ASLKDVG  VAATA
Sbjct: 1   MATVTSAAVAIPSFTGLKAGASSSSRVSTGASAKVAAAPVARLTVKASLKDVGAVVAATA 60

Query: 61  ATALLASNAMAIEILLGGNDGSLAFVPNDFSVASGEKIVFKNNAGFPHNVVFDEDEIPSG 120
            +A+LASNAMA+E+LLGG+DGSLAF+P +FSV++GEKI FKNNAGFPHNVVFDEDEIP+G
Sbjct: 61  VSAMLASNAMALEVLLGGDDGSLAFIPGNFSVSAGEKITFKNNAGFPHNVVFDEDEIPAG 120

Query: 121 VDAGKISMSEEDLLNAPGQVYEVQLTEKGSYSFYCSPHQGAGMVGKVTVN 168
           VDA KISMSEEDLLNA G+ Y V L+EKG+Y+FYC+PHQGAGMVGKVTVN
Sbjct: 121 VDASKISMSEEDLLNAAGETYSVTLSEKGTYTFYCAPHQGAGMVGKVTVN 170

[Close]

BLAST of Clc05G17120 vs. ExPASy TrEMBL
Match: A0A6J1FAV0 (Plastocyanin OS=Cucurbita moschata OX=3662 GN=LOC111443648 PE=3 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 5.7e-73
Identity = 147/167 (88.02%), Postives = 159/167 (95.21%), Query Frame = 0


Query: 1   MAAVTSAAVAIPSFTGLKSAGATSKPTAAVRVSSPATPKLSMRASLKDVGVAVAATAATA 60
           MA VTSA VAIP+FTGLKS    SKPTAAVRVSSPA PKL++RASLKD+GVAVAATAA+A
Sbjct: 1   MATVTSATVAIPTFTGLKSPATASKPTAAVRVSSPAVPKLTVRASLKDIGVAVAATAASA 60

Query: 61  LLASNAMAIEILLGGNDGSLAFVPNDFSVASGEKIVFKNNAGFPHNVVFDEDEIPSGVDA 120
           LLASNA+AIE+LLGG+DGSLAF+PNDFSVA+GEKIVFKNNAGFPHNVVFDEDEIPSGVDA
Sbjct: 61  LLASNALAIEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFPHNVVFDEDEIPSGVDA 120

Query: 121 GKISMSEEDLLNAPGQVYEVQLTEKGSYSFYCSPHQGAGMVGKVTVN 168
           GKISM+EEDLLNAPG+VYEV LTEKGSYSFYCSPHQGAGMVGKVTVN
Sbjct: 121 GKISMNEEDLLNAPGEVYEVNLTEKGSYSFYCSPHQGAGMVGKVTVN 167

[Close]

BLAST of Clc05G17120 vs. ExPASy TrEMBL
Match: A0A5A7VCJ5 (Plastocyanin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold205G001440 PE=3 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 2.2e-72
Identity = 150/167 (89.82%), Postives = 164/167 (98.20%), Query Frame = 0


Query: 1   MAAVTSAAVAIPSFTGLKSAGATSKPTAAVRVSSPATPKLSMRASLKDVGVAVAATAATA 60
           MAAVTSAAVAIPSFTGLKS+ ++SKPT+A+R+ SPA+PKLS+RASLKDVGVAVAATAA+A
Sbjct: 1   MAAVTSAAVAIPSFTGLKSS-SSSKPTSAIRLPSPASPKLSVRASLKDVGVAVAATAASA 60

Query: 61  LLASNAMAIEILLGGNDGSLAFVPNDFSVASGEKIVFKNNAGFPHNVVFDEDEIPSGVDA 120
           LLASNAMAIEILLGG+DGSLAFVPN+F+VASGEKIVFKNNAGFPHNVVFDEDEIPSGVDA
Sbjct: 61  LLASNAMAIEILLGGDDGSLAFVPNNFTVASGEKIVFKNNAGFPHNVVFDEDEIPSGVDA 120

Query: 121 GKISMSEEDLLNAPGQVYEVQLTEKGSYSFYCSPHQGAGMVGKVTVN 168
           GKISM EE+LLNAPG+VYEVQLTEKGSYSFYCSPHQGAGMVGKVTVN
Sbjct: 121 GKISMDEENLLNAPGEVYEVQLTEKGSYSFYCSPHQGAGMVGKVTVN 166

[Close]

BLAST of Clc05G17120 vs. ExPASy TrEMBL
Match: A0A6J1IFB6 (Plastocyanin OS=Cucurbita maxima OX=3661 GN=LOC111476724 PE=3 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 1.1e-71
Identity = 145/167 (86.83%), Postives = 159/167 (95.21%), Query Frame = 0


Query: 1   MAAVTSAAVAIPSFTGLKSAGATSKPTAAVRVSSPATPKLSMRASLKDVGVAVAATAATA 60
           MA VTSA VAIPSFTGLK++   SK TAAVRVSSP+ PKL++RASLKD+GVAVAATAA+A
Sbjct: 1   MATVTSATVAIPSFTGLKTSATASKSTAAVRVSSPSVPKLTVRASLKDLGVAVAATAASA 60

Query: 61  LLASNAMAIEILLGGNDGSLAFVPNDFSVASGEKIVFKNNAGFPHNVVFDEDEIPSGVDA 120
           LLASNA+AIE+LLGG+DGSLAF+PNDFSVA+GEKIVFKNNAGFPHNVVFDEDEIPSGVDA
Sbjct: 61  LLASNALAIEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFPHNVVFDEDEIPSGVDA 120

Query: 121 GKISMSEEDLLNAPGQVYEVQLTEKGSYSFYCSPHQGAGMVGKVTVN 168
           GKISM+EEDLLNAPG+VYEV LTEKGSYSFYCSPHQGAGMVGKVTVN
Sbjct: 121 GKISMNEEDLLNAPGEVYEVNLTEKGSYSFYCSPHQGAGMVGKVTVN 167

[Close]

BLAST of Clc05G17120 vs. ExPASy TrEMBL
Match: A0A5D3E5P8 (Plastocyanin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G007720 PE=3 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 1.1e-71
Identity = 149/167 (89.22%), Postives = 163/167 (97.60%), Query Frame = 0


Query: 1   MAAVTSAAVAIPSFTGLKSAGATSKPTAAVRVSSPATPKLSMRASLKDVGVAVAATAATA 60
           MAAVTSAAVAIPSFTGLKS+ ++SKPT+A+R+ SPA+PKLS+RASLKDVGVAVAATAA+A
Sbjct: 1   MAAVTSAAVAIPSFTGLKSS-SSSKPTSAIRLPSPASPKLSVRASLKDVGVAVAATAASA 60

Query: 61  LLASNAMAIEILLGGNDGSLAFVPNDFSVASGEKIVFKNNAGFPHNVVFDEDEIPSGVDA 120
           LLASNAMAIEILLGG+DGSLAFVPN+F+VASGE IVFKNNAGFPHNVVFDEDEIPSGVDA
Sbjct: 61  LLASNAMAIEILLGGDDGSLAFVPNNFTVASGETIVFKNNAGFPHNVVFDEDEIPSGVDA 120

Query: 121 GKISMSEEDLLNAPGQVYEVQLTEKGSYSFYCSPHQGAGMVGKVTVN 168
           GKISM EE+LLNAPG+VYEVQLTEKGSYSFYCSPHQGAGMVGKVTVN
Sbjct: 121 GKISMDEENLLNAPGEVYEVQLTEKGSYSFYCSPHQGAGMVGKVTVN 166

[Close]

BLAST of Clc05G17120 vs. ExPASy TrEMBL
Match: A0A1S3CRA6 (Plastocyanin OS=Cucumis melo OX=3656 GN=LOC103503851 PE=3 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 1.1e-71
Identity = 149/167 (89.22%), Postives = 163/167 (97.60%), Query Frame = 0


Query: 1   MAAVTSAAVAIPSFTGLKSAGATSKPTAAVRVSSPATPKLSMRASLKDVGVAVAATAATA 60
           MAAVTSAAVAIPSFTGLKS+ ++SKPT+A+R+ SPA+PKLS+RASLKDVGVAVAATAA+A
Sbjct: 1   MAAVTSAAVAIPSFTGLKSS-SSSKPTSAIRLPSPASPKLSVRASLKDVGVAVAATAASA 60

Query: 61  LLASNAMAIEILLGGNDGSLAFVPNDFSVASGEKIVFKNNAGFPHNVVFDEDEIPSGVDA 120
           LLASNAMAIEILLGG+DGSLAFVPN+F+VASGE IVFKNNAGFPHNVVFDEDEIPSGVDA
Sbjct: 61  LLASNAMAIEILLGGDDGSLAFVPNNFTVASGETIVFKNNAGFPHNVVFDEDEIPSGVDA 120

Query: 121 GKISMSEEDLLNAPGQVYEVQLTEKGSYSFYCSPHQGAGMVGKVTVN 168
           GKISM EE+LLNAPG+VYEVQLTEKGSYSFYCSPHQGAGMVGKVTVN
Sbjct: 121 GKISMDEENLLNAPGEVYEVQLTEKGSYSFYCSPHQGAGMVGKVTVN 166

[Close]

BLAST of Clc05G17120 vs. TAIR 10
Match: AT1G20340.1 (Cupredoxin superfamily protein )

HSP 1 Score: 231.9 bits (590), Expect = 3.8e-61
Identity = 118/167 (70.66%), Postives = 140/167 (83.83%), Query Frame = 0


Query: 1   MAAVTSAAVAIPSFTGLKSAGATSKPTAAVRVSSPATPKLSMRASLKDVGVAVAATAATA 60
           MA+VTSA VAIPSFTGLK++   S  T  ++ ++ A+PKL++++SLK+ GVA  A AA+ 
Sbjct: 1   MASVTSATVAIPSFTGLKASTIKSSATVRIQTAAVASPKLTVKSSLKNFGVAAVAAAASI 60

Query: 61  LLASNAMAIEILLGGNDGSLAFVPNDFSVASGEKIVFKNNAGFPHNVVFDEDEIPSGVDA 120
            LA NAMAIE+LLGG DGSLAF+PNDFS+A GEKIVFKNNAG+PHNVVFDEDEIPSGVD 
Sbjct: 61  ALAGNAMAIEVLLGGGDGSLAFIPNDFSIAKGEKIVFKNNAGYPHNVVFDEDEIPSGVDV 120

Query: 121 GKISMSEEDLLNAPGQVYEVQLTEKGSYSFYCSPHQGAGMVGKVTVN 168
            KISM E+DLLN  G+ YEV LTE G+YSFYC+PHQGAGMVGKVTVN
Sbjct: 121 AKISMDEQDLLNGAGETYEVALTEPGTYSFYCAPHQGAGMVGKVTVN 167

[Close]

BLAST of Clc05G17120 vs. TAIR 10
Match: AT1G76100.1 (plastocyanin 1 )

HSP 1 Score: 214.5 bits (545), Expect = 6.3e-56
Identity = 117/171 (68.42%), Postives = 136/171 (79.53%), Query Frame = 0


Query: 1   MAAVTSAAVAIPSFTGLKSAGATSKPTAAVRVS-----SPATPKLSMRASLKDVGVAVAA 60
           MAA+TSA V IPSFTGLK A  +SKP     +S     + A PKL++++SLKD GV   A
Sbjct: 1   MAAITSATVTIPSFTGLKLA-VSSKPKTLSTISRSTSATRAPPKLALKSSLKDFGVIAVA 60

Query: 61  TAATALLASNAMAIEILLGGNDGSLAFVPNDFSVASGEKIVFKNNAGFPHNVVFDEDEIP 120
           TAA+ +LA NAMA+E+LLG +DGSLAFVP++F+VA GEKIVFKNNAGFPHNVVFDEDEIP
Sbjct: 61  TAASIVLAGNAMAMEVLLGSDDGSLAFVPSEFTVAKGEKIVFKNNAGFPHNVVFDEDEIP 120

Query: 121 SGVDAGKISMSEEDLLNAPGQVYEVQLTEKGSYSFYCSPHQGAGMVGKVTV 167
           SGVDA KISM E  LLN  G+ YEV LTE GSY FYC+PHQGAGMVGK+TV
Sbjct: 121 SGVDASKISMDETALLNGAGETYEVTLTEPGSYGFYCAPHQGAGMVGKLTV 170

The following BLAST results are available for this feature:

BLAST of Clc05G17120 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896134.1	1.3e-74	92.22	plastocyanin [Benincasa hispida]	[more]
XP_022937324.1	1.2e-72	88.02	plastocyanin [Cucurbita moschata]	[more]
XP_023534891.1	2.0e-72	88.62	plastocyanin [Cucurbita pepo subsp. pepo]	[more]
KAA0063319.1	4.5e-72	89.82	plastocyanin [Cucumis melo var. makuwa]	[more]
KAG6591248.1	4.5e-72	88.02	Plastocyanin major isoform, chloroplastic, partial [Cucurbita argyrosperma subsp...	[more]

BLAST of Clc05G17120 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P00289	5.2e-63	75.60	Plastocyanin, chloroplastic OS=Spinacia oleracea OX=3562 GN=PETE PE=1 SV=2	[more]
P00299	2.9e-61	72.62	Plastocyanin A, chloroplastic OS=Populus nigra OX=3691 GN=PETE PE=1 SV=2	[more]
P11970	3.2e-60	71.43	Plastocyanin B, chloroplastic OS=Populus nigra OX=3691 GN=PETE PE=1 SV=2	[more]
P42699	5.4e-60	70.66	Plastocyanin major isoform, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DRT...	[more]
P17340	9.2e-60	70.59	Plastocyanin, chloroplastic OS=Solanum lycopersicum OX=4081 GN=PETE PE=2 SV=1	[more]

BLAST of Clc05G17120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FAV0	5.7e-73	88.02	Plastocyanin OS=Cucurbita moschata OX=3662 GN=LOC111443648 PE=3 SV=1	[more]
A0A5A7VCJ5	2.2e-72	89.82	Plastocyanin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold205G001440 ...	[more]
A0A6J1IFB6	1.1e-71	86.83	Plastocyanin OS=Cucurbita maxima OX=3661 GN=LOC111476724 PE=3 SV=1	[more]
A0A5D3E5P8	1.1e-71	89.22	Plastocyanin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G007720 ...	[more]
A0A1S3CRA6	1.1e-71	89.22	Plastocyanin OS=Cucumis melo OX=3656 GN=LOC103503851 PE=3 SV=1	[more]

BLAST of Clc05G17120 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G20340.1	3.8e-61	70.66	Cupredoxin superfamily protein	[more]
AT1G76100.1	6.3e-56	68.42	plastocyanin 1	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002387	Plastocyanin	PRINTS	PR00157	PLASTOCYANIN	coord: 74..93 score: 59.63 coord: 97..115 score: 83.95 coord: 146..165 score: 80.37
IPR002387	Plastocyanin	TIGRFAM	TIGR02656	TIGR02656	coord: 69..167 e-value: 1.8E-41 score: 138.5
IPR002387	Plastocyanin	CDD	cd04219	Plastocyanin	coord: 69..167 e-value: 7.42604E-48 score: 148.671
IPR001235	Blue (type 1) copper protein, plastocyanin-type	PRINTS	PR00156	COPPERBLUE	coord: 144..158 score: 51.99 coord: 88..101 score: 40.18 coord: 103..118 score: 55.62
IPR000923	Blue (type 1) copper domain	PFAM	PF00127	Copper-bind	coord: 70..167 e-value: 7.0E-34 score: 116.2
IPR008972	Cupredoxin	GENE3D	2.60.40.420		coord: 69..167 e-value: 1.0E-28 score: 101.9
IPR008972	Cupredoxin	SUPERFAMILY	49503	Cupredoxins	coord: 66..167
None	No IPR available	PANTHER	PTHR34192	PLASTOCYANIN MAJOR ISOFORM, CHLOROPLASTIC-RELATED	coord: 1..167
None	No IPR available	PANTHER	PTHR34192:SF11	PLASTOCYANIN	coord: 1..167
IPR028871	Blue (type 1) copper protein, binding site	PROSITE	PS00196	COPPER_BLUE	coord: 146..160

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc05G17120.1	Clc05G17120.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
cellular_component	GO:0009535	chloroplast thylakoid membrane
molecular_function	GO:0005507	copper ion binding
molecular_function	GO:0009055	electron transfer activity