Clc05G17010 (gene) Watermelon (cordophanus) v2

Overview
NameClc05G17010
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionLarge proline-rich protein BAG6 isoform X2
LocationClcChr05: 25336578 .. 25336904 (+)
RNA-Seq ExpressionClc05G17010
SyntenyClc05G17010
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGCCTTCAGCTCCGTCAAGCTCAGCCCCTGAATTTCAAATGCGCAAAAAGCCACTTAATTTATTCGCTAACGCACTAAAACGCAAGGACAGCTTCATTCAGTTCTTCGCCATGACTGGTATTTTGCTTCTAAGCTTCCGATCTTTGGGTCAGAAGTACCGTATCCACGACCTTCAAGAGGACACTACGGCTCTCAAACAAGAACAGGAAACCCTAATTGACCGTATGAACAACATCAAGCGCAGCCTCCTTCATGAGGCATCGCTCGACTCCACTGGCCTCTTCGCATCCAGGCTTCGCCTTCTCTTCAGCGAAGAAGATTAA

mRNA sequence

ATGGCGCCTTCAGCTCCGTCAAGCTCAGCCCCTGAATTTCAAATGCGCAAAAAGCCACTTAATTTATTCGCTAACGCACTAAAACGCAAGGACAGCTTCATTCAGTTCTTCGCCATGACTGGTATTTTGCTTCTAAGCTTCCGATCTTTGGGTCAGAAGTACCGTATCCACGACCTTCAAGAGGACACTACGGCTCTCAAACAAGAACAGGAAACCCTAATTGACCGTATGAACAACATCAAGCGCAGCCTCCTTCATGAGGCATCGCTCGACTCCACTGGCCTCTTCGCATCCAGGCTTCGCCTTCTCTTCAGCGAAGAAGATTAA

Coding sequence (CDS)

ATGGCGCCTTCAGCTCCGTCAAGCTCAGCCCCTGAATTTCAAATGCGCAAAAAGCCACTTAATTTATTCGCTAACGCACTAAAACGCAAGGACAGCTTCATTCAGTTCTTCGCCATGACTGGTATTTTGCTTCTAAGCTTCCGATCTTTGGGTCAGAAGTACCGTATCCACGACCTTCAAGAGGACACTACGGCTCTCAAACAAGAACAGGAAACCCTAATTGACCGTATGAACAACATCAAGCGCAGCCTCCTTCATGAGGCATCGCTCGACTCCACTGGCCTCTTCGCATCCAGGCTTCGCCTTCTCTTCAGCGAAGAAGATTAA

Protein sequence

MAPSAPSSSAPEFQMRKKPLNLFANALKRKDSFIQFFAMTGILLLSFRSLGQKYRIHDLQEDTTALKQEQETLIDRMNNIKRSLLHEASLDSTGLFASRLRLLFSEED
Homology
BLAST of Clc05G17010 vs. NCBI nr
Match: XP_038897763.1 (uncharacterized protein LOC120085692 [Benincasa hispida])

HSP 1 Score: 195.3 bits (495), Expect = 2.7e-46
Identity = 103/108 (95.37%), Postives = 105/108 (97.22%), Query Frame = 0

Query: 1   MAPSAPSSSAPEFQMRKKPLNLFANALKRKDSFIQFFAMTGILLLSFRSLGQKYRIHDLQ 60
           MAPSAPSSSAPEFQ  KKPL+LFANALKRKDSFIQFFAMTGILLLSFRSLGQKYRIHDLQ
Sbjct: 1   MAPSAPSSSAPEFQTPKKPLSLFANALKRKDSFIQFFAMTGILLLSFRSLGQKYRIHDLQ 60

Query: 61  EDTTALKQEQETLIDRMNNIKRSLLHEASLDSTGLFASRLRLLFSEED 109
           EDTTALKQEQETLIDRM NIKRSLLHEASL+STGLFASRLRLLFSEED
Sbjct: 61  EDTTALKQEQETLIDRMKNIKRSLLHEASLESTGLFASRLRLLFSEED 108

BLAST of Clc05G17010 vs. NCBI nr
Match: XP_023535555.1 (uncharacterized protein LOC111796960 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 194.1 bits (492), Expect = 6.1e-46
Identity = 102/108 (94.44%), Postives = 105/108 (97.22%), Query Frame = 0

Query: 1   MAPSAPSSSAPEFQMRKKPLNLFANALKRKDSFIQFFAMTGILLLSFRSLGQKYRIHDLQ 60
           MAPS+PSSSAPEFQM KKPL+LFANALKRKDSFIQFFAMTGILLLS RSLGQKYRIHDLQ
Sbjct: 1   MAPSSPSSSAPEFQMPKKPLSLFANALKRKDSFIQFFAMTGILLLSVRSLGQKYRIHDLQ 60

Query: 61  EDTTALKQEQETLIDRMNNIKRSLLHEASLDSTGLFASRLRLLFSEED 109
           EDTTALKQEQETLIDRM NIKRSLLHEASLDSTGLFASRLRLLFS+ED
Sbjct: 61  EDTTALKQEQETLIDRMKNIKRSLLHEASLDSTGLFASRLRLLFSQED 108

BLAST of Clc05G17010 vs. NCBI nr
Match: KAG6591237.1 (hypothetical protein SDJN03_13583, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024121.1 hypothetical protein SDJN02_12934, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 193.0 bits (489), Expect = 1.4e-45
Identity = 101/108 (93.52%), Postives = 105/108 (97.22%), Query Frame = 0

Query: 1   MAPSAPSSSAPEFQMRKKPLNLFANALKRKDSFIQFFAMTGILLLSFRSLGQKYRIHDLQ 60
           MAPS+PSSSAPEFQM KKPL+LFANALKRKDSFIQFFAMTGILLLS RSLGQKYRIHDLQ
Sbjct: 1   MAPSSPSSSAPEFQMPKKPLSLFANALKRKDSFIQFFAMTGILLLSVRSLGQKYRIHDLQ 60

Query: 61  EDTTALKQEQETLIDRMNNIKRSLLHEASLDSTGLFASRLRLLFSEED 109
           EDTTALKQEQETLIDRM NIKRSLLHEASLDSTGLFASRLRLLF++ED
Sbjct: 61  EDTTALKQEQETLIDRMKNIKRSLLHEASLDSTGLFASRLRLLFTQED 108

BLAST of Clc05G17010 vs. NCBI nr
Match: XP_022936518.1 (uncharacterized protein LOC111443106 [Cucurbita moschata])

HSP 1 Score: 193.0 bits (489), Expect = 1.4e-45
Identity = 101/108 (93.52%), Postives = 105/108 (97.22%), Query Frame = 0

Query: 1   MAPSAPSSSAPEFQMRKKPLNLFANALKRKDSFIQFFAMTGILLLSFRSLGQKYRIHDLQ 60
           MAPS+PSSSAPEFQM KKPL+LFANALKRKDSFIQFFAMTGILLLS RSLGQKYRIHDLQ
Sbjct: 1   MAPSSPSSSAPEFQMPKKPLSLFANALKRKDSFIQFFAMTGILLLSVRSLGQKYRIHDLQ 60

Query: 61  EDTTALKQEQETLIDRMNNIKRSLLHEASLDSTGLFASRLRLLFSEED 109
           EDTTALKQEQETL+DRM NIKRSLLHEASLDSTGLFASRLRLLFS+ED
Sbjct: 61  EDTTALKQEQETLMDRMKNIKRSLLHEASLDSTGLFASRLRLLFSQED 108

BLAST of Clc05G17010 vs. NCBI nr
Match: XP_022975908.1 (uncharacterized protein LOC111476471 [Cucurbita maxima])

HSP 1 Score: 191.4 bits (485), Expect = 4.0e-45
Identity = 100/108 (92.59%), Postives = 105/108 (97.22%), Query Frame = 0

Query: 1   MAPSAPSSSAPEFQMRKKPLNLFANALKRKDSFIQFFAMTGILLLSFRSLGQKYRIHDLQ 60
           MAPS+PSSSAPEFQM KKPL+LFANALKRKDSFIQFFAM+GILLLS RSLGQKYRIHDLQ
Sbjct: 1   MAPSSPSSSAPEFQMPKKPLSLFANALKRKDSFIQFFAMSGILLLSVRSLGQKYRIHDLQ 60

Query: 61  EDTTALKQEQETLIDRMNNIKRSLLHEASLDSTGLFASRLRLLFSEED 109
           EDTTALKQEQETLIDRM NIKRSLLHEASLDSTGLFASRLRLLFS++D
Sbjct: 61  EDTTALKQEQETLIDRMKNIKRSLLHEASLDSTGLFASRLRLLFSQDD 108

BLAST of Clc05G17010 vs. ExPASy TrEMBL
Match: A0A6J1FDG4 (uncharacterized protein LOC111443106 OS=Cucurbita moschata OX=3662 GN=LOC111443106 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 6.6e-46
Identity = 101/108 (93.52%), Postives = 105/108 (97.22%), Query Frame = 0

Query: 1   MAPSAPSSSAPEFQMRKKPLNLFANALKRKDSFIQFFAMTGILLLSFRSLGQKYRIHDLQ 60
           MAPS+PSSSAPEFQM KKPL+LFANALKRKDSFIQFFAMTGILLLS RSLGQKYRIHDLQ
Sbjct: 1   MAPSSPSSSAPEFQMPKKPLSLFANALKRKDSFIQFFAMTGILLLSVRSLGQKYRIHDLQ 60

Query: 61  EDTTALKQEQETLIDRMNNIKRSLLHEASLDSTGLFASRLRLLFSEED 109
           EDTTALKQEQETL+DRM NIKRSLLHEASLDSTGLFASRLRLLFS+ED
Sbjct: 61  EDTTALKQEQETLMDRMKNIKRSLLHEASLDSTGLFASRLRLLFSQED 108

BLAST of Clc05G17010 vs. ExPASy TrEMBL
Match: A0A6J1IKL0 (uncharacterized protein LOC111476471 OS=Cucurbita maxima OX=3661 GN=LOC111476471 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 1.9e-45
Identity = 100/108 (92.59%), Postives = 105/108 (97.22%), Query Frame = 0

Query: 1   MAPSAPSSSAPEFQMRKKPLNLFANALKRKDSFIQFFAMTGILLLSFRSLGQKYRIHDLQ 60
           MAPS+PSSSAPEFQM KKPL+LFANALKRKDSFIQFFAM+GILLLS RSLGQKYRIHDLQ
Sbjct: 1   MAPSSPSSSAPEFQMPKKPLSLFANALKRKDSFIQFFAMSGILLLSVRSLGQKYRIHDLQ 60

Query: 61  EDTTALKQEQETLIDRMNNIKRSLLHEASLDSTGLFASRLRLLFSEED 109
           EDTTALKQEQETLIDRM NIKRSLLHEASLDSTGLFASRLRLLFS++D
Sbjct: 61  EDTTALKQEQETLIDRMKNIKRSLLHEASLDSTGLFASRLRLLFSQDD 108

BLAST of Clc05G17010 vs. ExPASy TrEMBL
Match: A0A6J1CMC7 (uncharacterized protein LOC111012778 OS=Momordica charantia OX=3673 GN=LOC111012778 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 8.1e-44
Identity = 97/108 (89.81%), Postives = 101/108 (93.52%), Query Frame = 0

Query: 1   MAPSAPSSSAPEFQMRKKPLNLFANALKRKDSFIQFFAMTGILLLSFRSLGQKYRIHDLQ 60
           MAPSAPSSSAPEFQ+ KKPL LFANALKRKDSFIQFFAMTGI+LLS RSLGQKYRIHDLQ
Sbjct: 1   MAPSAPSSSAPEFQLPKKPLGLFANALKRKDSFIQFFAMTGIMLLSVRSLGQKYRIHDLQ 60

Query: 61  EDTTALKQEQETLIDRMNNIKRSLLHEASLDSTGLFASRLRLLFSEED 109
           EDT+ALKQE ETLIDRM NIKRSLLHEASLD TG FASRLRLLFS+ED
Sbjct: 61  EDTSALKQEHETLIDRMKNIKRSLLHEASLDPTGFFASRLRLLFSDED 108

BLAST of Clc05G17010 vs. ExPASy TrEMBL
Match: A0A0A0L5S3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G653420 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 2.0e-42
Identity = 95/108 (87.96%), Postives = 100/108 (92.59%), Query Frame = 0

Query: 1   MAPSAPSSSAPEFQMRKKPLNLFANALKRKDSFIQFFAMTGILLLSFRSLGQKYRIHDLQ 60
           MAPSAPSSS PEFQM KKPL L+ANALKRKDSFIQ  AMTGILLLSFRSLGQKYRI+DLQ
Sbjct: 1   MAPSAPSSSTPEFQMSKKPLGLYANALKRKDSFIQLLAMTGILLLSFRSLGQKYRINDLQ 60

Query: 61  EDTTALKQEQETLIDRMNNIKRSLLHEASLDSTGLFASRLRLLFSEED 109
           EDTTALKQE ETL+DRM NIKRSLLHEASL+STG FASRLRLLFS+ED
Sbjct: 61  EDTTALKQEHETLVDRMKNIKRSLLHEASLESTGHFASRLRLLFSDED 108

BLAST of Clc05G17010 vs. ExPASy TrEMBL
Match: A0A1S3BW63 (uncharacterized protein LOC103493794 OS=Cucumis melo OX=3656 GN=LOC103493794 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 4.6e-39
Identity = 89/108 (82.41%), Postives = 95/108 (87.96%), Query Frame = 0

Query: 1   MAPSAPSSSAPEFQMRKKPLNLFANALKRKDSFIQFFAMTGILLLSFRSLGQKYRIHDLQ 60
           MAPSAPSSS PEFQM KKPL  +AN LK KD  IQ  AMTGILLLS RSLGQKYRI++LQ
Sbjct: 1   MAPSAPSSSTPEFQMSKKPLGFYANVLKHKDGLIQLLAMTGILLLSCRSLGQKYRINNLQ 60

Query: 61  EDTTALKQEQETLIDRMNNIKRSLLHEASLDSTGLFASRLRLLFSEED 109
           EDTTALKQE ETL+DRM NIKRSLLHEASL+STGLFASRLRLLFS+ED
Sbjct: 61  EDTTALKQEHETLVDRMKNIKRSLLHEASLESTGLFASRLRLLFSDED 108

BLAST of Clc05G17010 vs. TAIR 10
Match: AT1G20430.1 (unknown protein; Has 29 Blast hits to 29 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 118.6 bits (296), Expect = 3.0e-27
Identity = 66/114 (57.89%), Postives = 78/114 (68.42%), Query Frame = 0

Query: 1   MAPSAPSSSA-------PEFQMRKKPLNLFANALKRKDSFIQFFAMTGILLLSFRSLGQK 60
           MA SAP  S        P   +       F N  K K SF QF AMTGILLLSFRS+ QK
Sbjct: 1   MASSAPQGSVDPLTGKDPAKALTAVASGFFENVKKNKQSFFQFAAMTGILLLSFRSVSQK 60

Query: 61  YRIHDLQEDTTALKQEQETLIDRMNNIKRSLLHEASLDSTGLFASRLRLLFSEE 108
           YRIHDL+EDT  LK+EQ++L DRM+ IK  LLH+AS+DS+G+FASRLRLLF E+
Sbjct: 61  YRIHDLEEDTAVLKKEQDSLTDRMSKIKSDLLHQASIDSSGVFASRLRLLFGED 114

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038897763.12.7e-4695.37uncharacterized protein LOC120085692 [Benincasa hispida][more]
XP_023535555.16.1e-4694.44uncharacterized protein LOC111796960 [Cucurbita pepo subsp. pepo][more]
KAG6591237.11.4e-4593.52hypothetical protein SDJN03_13583, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022936518.11.4e-4593.52uncharacterized protein LOC111443106 [Cucurbita moschata][more]
XP_022975908.14.0e-4592.59uncharacterized protein LOC111476471 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1FDG46.6e-4693.52uncharacterized protein LOC111443106 OS=Cucurbita moschata OX=3662 GN=LOC1114431... [more]
A0A6J1IKL01.9e-4592.59uncharacterized protein LOC111476471 OS=Cucurbita maxima OX=3661 GN=LOC111476471... [more]
A0A6J1CMC78.1e-4489.81uncharacterized protein LOC111012778 OS=Momordica charantia OX=3673 GN=LOC111012... [more]
A0A0A0L5S32.0e-4287.96Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G653420 PE=4 SV=1[more]
A0A1S3BW634.6e-3982.41uncharacterized protein LOC103493794 OS=Cucumis melo OX=3656 GN=LOC103493794 PE=... [more]
Match NameE-valueIdentityDescription
AT1G20430.13.0e-2757.89unknown protein; Has 29 Blast hits to 29 proteins in 10 species: Archae - 0; Bac... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36316OS06G0213900 PROTEINcoord: 1..107
NoneNo IPR availablePANTHERPTHR36316:SF1OS06G0213900 PROTEINcoord: 1..107

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc05G17010.1Clc05G17010.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane