Clc05G16960 (gene) Watermelon (cordophanus) v2

Overview
NameClc05G16960
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionNADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2
LocationClcChr05: 25291141 .. 25293261 (-)
RNA-Seq ExpressionClc05G16960
SyntenyClc05G16960
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGCCGAATGAAAAGGCCCACTTACTGGAATGGCCCAGTTTCGGAGCCCATTTTACTACCTTCCCCCTACACAAAAGTCGAGTCGCATGTGTGATTTTAAATCCAGCTTTCCATCTTCTTCACTAATCCTTTCTGCAATCAGATTTTGCTGATCAGTTGAAAGTGCAGAGGCCAATTATGGGAGGTGCTGGACACGGAGCTGGAACTACTTACAAGGGCATGACCCTACATCAGCCCAAGCGCTGGCACACCGTCACCGGCAAGGGATTGTGCGCCGTTATGTGGTATAAACCCTAGCTTCCTTAGTTTCCGATCCACCAATTCTATTGAAGGAGCTTAAATTTGATTCTCCTGTGTTATCCAACCTGCACCATAGTTAGTTTCTTTACTTTCTTTACTTTCTTTACTTTCTTTCTCTGTCTTTCCAAGTCCTGCCCTCTTTTCCGATCTGTCCTCATCGCATTGTTCATAATAATTGCATCGCGATCGATTGGAGTCACAAGGCTTAATATTATCTTGATGCTAGATGCTATATCTGAATACCTCATCTCCTATGTAATTTGATGTTTGAGTGGAAATTAGTAATCGTTCAGATTCTCAGTATTAGTAGGATTGAGAAATTGGCATTCCCAACGGTTCATAATCTGGGTTTTCACCAAATTATTGATCATAATCTTTCAGGTTTTGGGTGCTATATAGGGCGAAACAAGATGGACCTGTAGTACTGGTAAAAATTACTGTTTTCTAAATCATTAAATTACATTTCTACATATTATGTTATTTACTTTCAAGTATTGAATCTTTAATTTTCTGGTCGAGGATATAGGCCTTAACTAGTTAGCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTACGTAGTATTTTTCTATTTCTGAAAGTCTCATTTTTGTAATATTTGTAATGATCAGGGCTGGAGACATCCATGGGAAGGCCATGGTGACCATGGGCACGGGCACTAGGTACTATTTTCATTATTTACCTCTCTTCAAAATTCCGCAATTAATTATCTGTTTTTATAGACAAAAAAAGTCAAAACAAAATGTGTCCTAGCTTTCTGCTGTAAGTGCAACACTGAACTATTAACCAGTTGATATCAGGTAATATGAAAGCTACCAGCTACAGGCACTGCTTTTTTGGTTAGTCTTTTACTTCCTTTGTTTGGCTGGTGTGCATTTCTGTTGATAAGTTTTACAGGTCCTTTGTAGGCTTGTTGTCAATGGTCGGGGAAATGGCAAGGCTTCGGCTGCAGTTTTCTTCCTATTTGCATGTTACAAGTACCATATTTTCTAAGTTCTGTTCTAATAAGGATATTGTGATAGCCAAACAGACATAAACATCACTTCGTCATTTTTACTCTGTAATCATGAATTCTTCTGATGTGTTTTGAATATTTGATTTGTGTTCAATCACTGCTTTTGTTGAGTTGAAGCAAAGATCAATGCCCATTTCTGAATATAGTTTGTTCTTTGGTTGCGTTGTGTCTCTTGCATATGAAGTCTACTATCTTTTAAATTAAGGCTATTCTATTTGGCTCAATTTGATTGGTCCAAACTGAAATTCATGTAACCAATGGTGATGAAGCAATCGTGAATGCATACTGCCCTTGAATTTAGTGTCACAACAGAGGGATTTTATTTGCCGCGAGACAGTTTTTCAACTGCAAATAAAGAAACTTAACCGAAGAGATATCAAGAATGCATAGAAAGATTCGCTTCTTACTTGCTGCATCAGAGAATTTGTAGATCTTTGAAAGAACTTTCCAGCTTCTCAGCTTTCTGAATGCTAAATTCCAAAGCCTTTGTTGCCTCTGCAGTAAAGCAATATTGTCATTTCATAGATAGCTCGTATCTTTGTCTGCGTATGTATATACCAATTTTAATGAACTCAGTGTCTGTTTGCTTGCTGGAGAGGGTATTAAGCCTTAGCTTAGGCCAGGGAGATAATATCTAAAATTCACTGTACAAATTAGACTACATTATGGATAAATTATCCCTGTTCGCTTCAGCTCGAGCAACGTTATCTCTTATTATTCATATCTTCCTATTGAGAACTGAGATCGTGGTAGATTTGGTTCAACAAACAGAGCATGAGTGA

mRNA sequence

ATGCGCCGAATGAAAAGGCCCACTTACTGGAATGGCCCAGTTTCGGAGCCCATTTTACTACCTTCCCCCTACACAAAAGTCGAGTCGCATAGGCCAATTATGGGAGGTGCTGGACACGGAGCTGGAACTACTTACAAGGGCATGACCCTACATCAGCCCAAGCGCTGGCACACCGTCACCGGCAAGGGATTGTGCGCCGTTATGTGGTTTTGGTACTGGGCTGGAGACATCCATGGGAAGGCCATGGTGACCATGGGCACGGGCACTAGGTCCTTTGTAGGCTTGTTGTCAATGGTCGGGGAAATGGCAAGGCTTCGGCTGCAGTTTTCTTCCTATTTGCATGTTACAACTCGAGCAACGTTATCTCTTATTATTCATATCTTCCTATTGAGAACTGAGATCGTGGTAGATTTGGTTCAACAAACAGAGCATGAGTGA

Coding sequence (CDS)

ATGCGCCGAATGAAAAGGCCCACTTACTGGAATGGCCCAGTTTCGGAGCCCATTTTACTACCTTCCCCCTACACAAAAGTCGAGTCGCATAGGCCAATTATGGGAGGTGCTGGACACGGAGCTGGAACTACTTACAAGGGCATGACCCTACATCAGCCCAAGCGCTGGCACACCGTCACCGGCAAGGGATTGTGCGCCGTTATGTGGTTTTGGTACTGGGCTGGAGACATCCATGGGAAGGCCATGGTGACCATGGGCACGGGCACTAGGTCCTTTGTAGGCTTGTTGTCAATGGTCGGGGAAATGGCAAGGCTTCGGCTGCAGTTTTCTTCCTATTTGCATGTTACAACTCGAGCAACGTTATCTCTTATTATTCATATCTTCCTATTGAGAACTGAGATCGTGGTAGATTTGGTTCAACAAACAGAGCATGAGTGA

Protein sequence

MRRMKRPTYWNGPVSEPILLPSPYTKVESHRPIMGGAGHGAGTTYKGMTLHQPKRWHTVTGKGLCAVMWFWYWAGDIHGKAMVTMGTGTRSFVGLLSMVGEMARLRLQFSSYLHVTTRATLSLIIHIFLLRTEIVVDLVQQTEHE
Homology
[Close]
BLAST of Clc05G16960 vs. NCBI nr
Match: KAG7024119.1 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 115.2 bits (287), Expect = 4.9e-22
Identity = 59/94 (62.77%), Postives = 61/94 (64.89%), Query Frame = 0 

Query: 34  MGGAGHGAGTTYKGMTLHQPKRWHTVTGKGLCAVMWFWYW-------------------- 93
           MGG GHGAGTT+KGMT+HQPKRWHTVTGKGLCAVMWFW                      
Sbjct: 1   MGGGGHGAGTTFKGMTIHQPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLYLFSRCLIL 60

Query: 94  -------AGDIHGKAMVTMGTGTRSFVGLLSMVG 101
                  AGDIHGKAMVTM   TRSFVGLLSMVG
Sbjct: 61  VIFVMIRAGDIHGKAMVTMDMITRSFVGLLSMVG 94

[Close]
BLAST of Clc05G16960 vs. NCBI nr
Match: XP_038897102.1 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Benincasa hispida] >XP_038897103.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Benincasa hispida] >XP_038897104.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Benincasa hispida])

HSP 1 Score: 90.5 bits (223), Expect = 1.3e-14
Identity = 37/38 (97.37%), Postives = 37/38 (97.37%), Query Frame = 0 

Query: 34 MGGAGHGAGTTYKGMTLHQPKRWHTVTGKGLCAVMWFW 72
          MGG GHGAGTTYKGMTLHQPKRWHTVTGKGLCAVMWFW
Sbjct: 1  MGGGGHGAGTTYKGMTLHQPKRWHTVTGKGLCAVMWFW 38

[Close]
BLAST of Clc05G16960 vs. NCBI nr
Match: XP_022936519.1 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucurbita moschata] >XP_022936520.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucurbita moschata] >XP_022975909.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucurbita maxima] >XP_022975910.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucurbita maxima] >XP_023534987.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucurbita pepo subsp. pepo] >XP_023534988.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucurbita pepo subsp. pepo] >KAG6591233.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 88.2 bits (217), Expect = 6.4e-14
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 0 

Query: 34 MGGAGHGAGTTYKGMTLHQPKRWHTVTGKGLCAVMWFW 72
          MGG GHGAGTT+KGMT+HQPKRWHTVTGKGLCAVMWFW
Sbjct: 1  MGGGGHGAGTTFKGMTIHQPKRWHTVTGKGLCAVMWFW 38

[Close]
BLAST of Clc05G16960 vs. NCBI nr
Match: XP_030447060.1 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Syzygium oleosum])

HSP 1 Score: 86.3 bits (212), Expect = 2.4e-13
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 0 

Query: 34 MGGAGHGAGTTYKGMTLHQPKRWHTVTGKGLCAVMWFW 72
          MGG GHG GTTYKG+T+HQPKRWHTVTGKGLCAVMWFW
Sbjct: 1  MGGGGHGGGTTYKGITVHQPKRWHTVTGKGLCAVMWFW 38

[Close]
BLAST of Clc05G16960 vs. NCBI nr
Match: XP_008452937.1 (PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucumis melo] >XP_008452938.1 PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucumis melo])

HSP 1 Score: 85.5 bits (210), Expect = 4.1e-13
Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = 0 

Query: 34 MGGAGHGAGTTYKGMTLHQPKRWHTVTGKGLCAVMWFW 72
          MGG GHGAGTTYKG+T+H PKRWHTVTGKGLCA+MWFW
Sbjct: 1  MGGGGHGAGTTYKGVTIHPPKRWHTVTGKGLCAIMWFW 38

[Close]
BLAST of Clc05G16960 vs. ExPASy Swiss-Prot
Match: Q8LDK3 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 OS=Arabidopsis thaliana OX=3702 GN=At1g76200 PE=1 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 3.9e-14
Identity = 31/38 (81.58%), Postives = 33/38 (86.84%), Query Frame = 0 

Query: 34 MGGAGHGAGTTYKGMTLHQPKRWHTVTGKGLCAVMWFW 72
          MGG GHG G TYKG+T+H PK WHTVTGKGLCAVMWFW
Sbjct: 1  MGGGGHGGGITYKGVTVHTPKTWHTVTGKGLCAVMWFW 38

[Close]
BLAST of Clc05G16960 vs. ExPASy TrEMBL
Match: A0A6J1ILY9 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC111476472 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 3.1e-14
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 0 

Query: 34 MGGAGHGAGTTYKGMTLHQPKRWHTVTGKGLCAVMWFW 72
          MGG GHGAGTT+KGMT+HQPKRWHTVTGKGLCAVMWFW
Sbjct: 1  MGGGGHGAGTTFKGMTIHQPKRWHTVTGKGLCAVMWFW 38

[Close]
BLAST of Clc05G16960 vs. ExPASy TrEMBL
Match: A0A6J1F8I8 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 OS=Cucurbita moschata OX=3662 GN=LOC111443107 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 3.1e-14
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 0 

Query: 34 MGGAGHGAGTTYKGMTLHQPKRWHTVTGKGLCAVMWFW 72
          MGG GHGAGTT+KGMT+HQPKRWHTVTGKGLCAVMWFW
Sbjct: 1  MGGGGHGAGTTFKGMTIHQPKRWHTVTGKGLCAVMWFW 38

[Close]
BLAST of Clc05G16960 vs. ExPASy TrEMBL
Match: A0A1S3BV22 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 OS=Cucumis melo OX=3656 GN=LOC103493798 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 2.0e-13
Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = 0 

Query: 34 MGGAGHGAGTTYKGMTLHQPKRWHTVTGKGLCAVMWFW 72
          MGG GHGAGTTYKG+T+H PKRWHTVTGKGLCA+MWFW
Sbjct: 1  MGGGGHGAGTTYKGVTIHPPKRWHTVTGKGLCAIMWFW 38

[Close]
BLAST of Clc05G16960 vs. ExPASy TrEMBL
Match: A0A5A7VAL3 (NADH dehydrogenase (Ubiquinone) 1 beta subcomplex subunit 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00790 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 2.0e-13
Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = 0 

Query: 34 MGGAGHGAGTTYKGMTLHQPKRWHTVTGKGLCAVMWFW 72
          MGG GHGAGTTYKG+T+H PKRWHTVTGKGLCA+MWFW
Sbjct: 1  MGGGGHGAGTTYKGVTIHPPKRWHTVTGKGLCAIMWFW 38

[Close]
BLAST of Clc05G16960 vs. ExPASy TrEMBL
Match: A0A445E2R0 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A03g016275 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 2.6e-13
Identity = 52/115 (45.22%), Postives = 72/115 (62.61%), Query Frame = 0 

Query: 19  LLPS-PYTKVESHRP--IMGGAGHGAGTTYKGMTLHQPKRWHTVTGKGLCAVMWFWYWAG 78
           LLPS P  K+   RP   MGG GHG GTTYKG+T+HQPKRWHTV GKGLCAVMWFW +  
Sbjct: 82  LLPSFPSLKLFPRRPESKMGG-GHGEGTTYKGITIHQPKRWHTVAGKGLCAVMWFWVFYR 141

Query: 79  DIHGKAMVTMGTGTRSFVGLLSMVGEMARLRLQFSSYLHVTTRATLSLIIHIFLL 131
                 +V  G   R+ + +++MV + +RL+L+      +     L L+ +++L+
Sbjct: 142 AKQDGPVVVGGILGRATM-IMAMVVDTSRLQLR-KGEQQILKSLCLPLVSNVYLI 193

[Close]
BLAST of Clc05G16960 vs. TAIR 10
Match: AT1G76200.1 (unknown protein; Has 96 Blast hits to 96 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 47; Plants - 38; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). )

HSP 1 Score: 79.3 bits (194), Expect = 2.8e-15
Identity = 31/38 (81.58%), Postives = 33/38 (86.84%), Query Frame = 0 

Query: 34 MGGAGHGAGTTYKGMTLHQPKRWHTVTGKGLCAVMWFW 72
          MGG GHG G TYKG+T+H PK WHTVTGKGLCAVMWFW
Sbjct: 1  MGGGGHGGGITYKGVTVHTPKTWHTVTGKGLCAVMWFW 38

The following BLAST results are available for this feature:
BLAST of Clc05G16960 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7024119.14.9e-2262.77NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucurbita argyrospe... [more]
XP_038897102.11.3e-1497.37NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Benincasa hispida] ... [more]
XP_022936519.16.4e-1492.11NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucurbita moschata]... [more]
XP_030447060.12.4e-1389.47NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Syzygium oleosum][more]
XP_008452937.14.1e-1386.84PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucumis ... [more]
BLAST of Clc05G16960 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8LDK33.9e-1481.58NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 OS=Arabidopsis thali... [more]
BLAST of Clc05G16960 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1ILY93.1e-1492.11NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 OS=Cucurbita maxima ... [more]
A0A6J1F8I83.1e-1492.11NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 OS=Cucurbita moschat... [more]
A0A1S3BV222.0e-1386.84NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 OS=Cucumis melo OX=3... [more]
A0A5A7VAL32.0e-1386.84NADH dehydrogenase (Ubiquinone) 1 beta subcomplex subunit 2 OS=Cucumis melo var.... [more]
A0A445E2R02.6e-1345.22Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A03g016275 PE=4 SV=1[more]
BLAST of Clc05G16960 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G76200.12.8e-1581.58unknown protein; Has 96 Blast hits to 96 proteins in 48 species: Archae - 0; Bac... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc05G16960.1Clc05G16960.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005747 mitochondrial respiratory chain complex I