Clc05G16895 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc05G16895
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Gag-pol polyprotein
Location	ClcChr05: 25093206 .. 25093466 (-)
RNA-Seq Expression	Clc05G16895
Synteny	Clc05G16895

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAAGTAGTCAAGGATCGAGAGACAAAAGGTTCAGGTGTAGAGAATGTGAGGGATTTGGCCATTACCAAGCTGATTGTCCAAACTTCCTAAAAAGACAAAGCAAGGGTTACACTGTAACACTATCTGATGATGACTATGAGTCAAACAGTGACTCTGATGAAGAAATTCGTGCTTTAATGAGATGCTTATCTCCTAAGGATTCCAACGTGACATCTCCTTCTGATATTAAAACTCCTGTGGTGCTTGAGAAGACCTAA

mRNA sequence

ATGGTAAGTAGTCAAGGATCGAGAGACAAAAGGTTCAGGTGTAGAGAATGTGAGGGATTTGGCCATTACCAAGCTGATTGTCCAAACTTCCTAAAAAGACAAAGCAAGGGTTACACTGTAACACTATCTGATGATGACTATGAGTCAAACAGTGACTCTGATGAAGAAATTCGTGCTTTAATGAGATGCTTATCTCCTAAGGATTCCAACGTGACATCTCCTTCTGATATTAAAACTCCTGTGGTGCTTGAGAAGACCTAA

Coding sequence (CDS)

ATGGTAAGTAGTCAAGGATCGAGAGACAAAAGGTTCAGGTGTAGAGAATGTGAGGGATTTGGCCATTACCAAGCTGATTGTCCAAACTTCCTAAAAAGACAAAGCAAGGGTTACACTGTAACACTATCTGATGATGACTATGAGTCAAACAGTGACTCTGATGAAGAAATTCGTGCTTTAATGAGATGCTTATCTCCTAAGGATTCCAACGTGACATCTCCTTCTGATATTAAAACTCCTGTGGTGCTTGAGAAGACCTAA

Protein sequence

MVSSQGSRDKRFRCRECEGFGHYQADCPNFLKRQSKGYTVTLSDDDYESNSDSDEEIRALMRCLSPKDSNVTSPSDIKTPVVLEKT

Homology

[Close]

BLAST of Clc05G16895 vs. NCBI nr
Match: KAA0042878.1 (uncharacterized protein E6C27_scaffold44G003930 [Cucumis melo var. makuwa] >TYK05281.1 uncharacterized protein E5676_scaffold108G00980 [Cucumis melo var. makuwa])

HSP 1 Score: 72.8 bits (177), Expect = 1.6e-09
Identity = 35/69 (50.72%), Postives = 46/69 (66.67%), Query Frame = 0


Query: 10  KRFRCRECEGFGHYQADCPNFLKRQSKGYTVTLSDDDYESNSDSDEEIRALMRCLSPKDS 69
           + FRCRECEGFGHYQA+CP +L+RQ K Y  TLSD+D + + D D  + A   C++  +S
Sbjct: 97  RSFRCRECEGFGHYQAECPTYLRRQKKNYCATLSDEDLDDDED-DHGMNAFTTCITEINS 156

Query: 70  NVTSP-SDI 78
              S  SDI
Sbjct: 157 EADSECSDI 164

[Close]

BLAST of Clc05G16895 vs. NCBI nr
Match: KAA0050476.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 72.8 bits (177), Expect = 1.6e-09
Identity = 37/79 (46.84%), Postives = 49/79 (62.03%), Query Frame = 0


Query: 10  KRFRCRECEGFGHYQADCPNFLKRQSKGYTVTLSDDDYESNSDSDEEIRALMRCLSPKDS 69
           + FRCRECEGFGHYQ +CP +LKRQ K Y  TLSD+D + + D D  + A   C++  +S
Sbjct: 123 RSFRCRECEGFGHYQVECPTYLKRQKKNYYATLSDEDSDDDKD-DHGMNAFTTCITEINS 182

Query: 70  NV---TSPSDIKTPVVLEK 86
            V    S +D    + LEK
Sbjct: 183 EVDSECSDNDEDEELTLEK 200

[Close]

BLAST of Clc05G16895 vs. NCBI nr
Match: KAA0042420.1 (gag-proteinase polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 72.8 bits (177), Expect = 1.6e-09
Identity = 32/64 (50.00%), Postives = 44/64 (68.75%), Query Frame = 0


Query: 10  KRFRCRECEGFGHYQADCPNFLKRQSKGYTVTLSDDDYESNSDSDEEIRALMRCLSPKDS 69
           + FRCRECEGFGHYQA+CP +L+RQ K Y  TLSD+D + + D D ++ A   C++  +S
Sbjct: 171 RSFRCRECEGFGHYQAECPTYLRRQKKIYCATLSDEDLDDDED-DHDMNAFTACITEINS 230

Query: 70  NVTS 74
              S
Sbjct: 231 EADS 233

[Close]

BLAST of Clc05G16895 vs. NCBI nr
Match: KAA0060126.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 72.8 bits (177), Expect = 1.6e-09
Identity = 33/64 (51.56%), Postives = 42/64 (65.62%), Query Frame = 0


Query: 10  KRFRCRECEGFGHYQADCPNFLKRQSKGYTVTLSDDDYESNSDSDEEIRALMRCLSPKDS 69
           + FRCREC+GFGHYQ DCP +LKRQ K Y  TLSD+D + + D D  I A   C++  +S
Sbjct: 227 RSFRCRECDGFGHYQVDCPTYLKRQKKNYCSTLSDEDSDDDED-DHGINAFTACITKINS 286

Query: 70  NVTS 74
              S
Sbjct: 287 EADS 289

[Close]

BLAST of Clc05G16895 vs. NCBI nr
Match: TYK08440.1 (gag-proteinase polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 2.1e-09
Identity = 33/64 (51.56%), Postives = 42/64 (65.62%), Query Frame = 0


Query: 10  KRFRCRECEGFGHYQADCPNFLKRQSKGYTVTLSDDDYESNSDSDEEIRALMRCLSPKDS 69
           + FRCREC+GFGHYQ DCP +LKRQ K Y  TLSD+D + + D D  I A   C++  +S
Sbjct: 227 RSFRCRECDGFGHYQIDCPTYLKRQKKNYCSTLSDEDSDDDED-DHGINAFTACITKINS 286

Query: 70  NVTS 74
              S
Sbjct: 287 EADS 289

[Close]

BLAST of Clc05G16895 vs. ExPASy TrEMBL
Match: A0A5A7TJA6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G00980 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 7.9e-10
Identity = 35/69 (50.72%), Postives = 46/69 (66.67%), Query Frame = 0


Query: 10  KRFRCRECEGFGHYQADCPNFLKRQSKGYTVTLSDDDYESNSDSDEEIRALMRCLSPKDS 69
           + FRCRECEGFGHYQA+CP +L+RQ K Y  TLSD+D + + D D  + A   C++  +S
Sbjct: 97  RSFRCRECEGFGHYQAECPTYLRRQKKNYCATLSDEDLDDDED-DHGMNAFTTCITEINS 156

Query: 70  NVTSP-SDI 78
              S  SDI
Sbjct: 157 EADSECSDI 164

[Close]

BLAST of Clc05G16895 vs. ExPASy TrEMBL
Match: A0A5A7V0X1 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold39G00460 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 7.9e-10
Identity = 33/64 (51.56%), Postives = 42/64 (65.62%), Query Frame = 0


Query: 10  KRFRCRECEGFGHYQADCPNFLKRQSKGYTVTLSDDDYESNSDSDEEIRALMRCLSPKDS 69
           + FRCREC+GFGHYQ DCP +LKRQ K Y  TLSD+D + + D D  I A   C++  +S
Sbjct: 227 RSFRCRECDGFGHYQVDCPTYLKRQKKNYCSTLSDEDSDDDED-DHGINAFTACITKINS 286

Query: 70  NVTS 74
              S
Sbjct: 287 EADS 289

[Close]

BLAST of Clc05G16895 vs. ExPASy TrEMBL
Match: A0A5A7TGG3 (Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold943G00380 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 7.9e-10
Identity = 32/64 (50.00%), Postives = 44/64 (68.75%), Query Frame = 0


Query: 10  KRFRCRECEGFGHYQADCPNFLKRQSKGYTVTLSDDDYESNSDSDEEIRALMRCLSPKDS 69
           + FRCRECEGFGHYQA+CP +L+RQ K Y  TLSD+D + + D D ++ A   C++  +S
Sbjct: 171 RSFRCRECEGFGHYQAECPTYLRRQKKIYCATLSDEDLDDDED-DHDMNAFTACITEINS 230

Query: 70  NVTS 74
              S
Sbjct: 231 EADS 233

[Close]

BLAST of Clc05G16895 vs. ExPASy TrEMBL
Match: A0A5A7U8G9 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G00900 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 7.9e-10
Identity = 37/79 (46.84%), Postives = 49/79 (62.03%), Query Frame = 0


Query: 10  KRFRCRECEGFGHYQADCPNFLKRQSKGYTVTLSDDDYESNSDSDEEIRALMRCLSPKDS 69
           + FRCRECEGFGHYQ +CP +LKRQ K Y  TLSD+D + + D D  + A   C++  +S
Sbjct: 123 RSFRCRECEGFGHYQVECPTYLKRQKKNYYATLSDEDSDDDKD-DHGMNAFTTCITEINS 182

Query: 70  NV---TSPSDIKTPVVLEK 86
            V    S +D    + LEK
Sbjct: 183 EVDSECSDNDEDEELTLEK 200

[Close]

BLAST of Clc05G16895 vs. ExPASy TrEMBL
Match: A0A5D3CAS2 (Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold654G00560 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.0e-09
Identity = 33/64 (51.56%), Postives = 42/64 (65.62%), Query Frame = 0


Query: 10  KRFRCRECEGFGHYQADCPNFLKRQSKGYTVTLSDDDYESNSDSDEEIRALMRCLSPKDS 69
           + FRCREC+GFGHYQ DCP +LKRQ K Y  TLSD+D + + D D  I A   C++  +S
Sbjct: 227 RSFRCRECDGFGHYQIDCPTYLKRQKKNYCSTLSDEDSDDDED-DHGINAFTACITKINS 286

Query: 70  NVTS 74
              S
Sbjct: 287 EADS 289

The following BLAST results are available for this feature:

BLAST of Clc05G16895 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0042878.1	1.6e-09	50.72	uncharacterized protein E6C27_scaffold44G003930 [Cucumis melo var. makuwa] >TYK0...	[more]
KAA0050476.1	1.6e-09	46.84	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0042420.1	1.6e-09	50.00	gag-proteinase polyprotein [Cucumis melo var. makuwa]	[more]
KAA0060126.1	1.6e-09	51.56	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
TYK08440.1	2.1e-09	51.56	gag-proteinase polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of Clc05G16895 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc05G16895 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TJA6	7.9e-10	50.72	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V0X1	7.9e-10	51.56	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold39G0...	[more]
A0A5A7TGG3	7.9e-10	50.00	Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff...	[more]
A0A5A7U8G9	7.9e-10	46.84	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G...	[more]
A0A5D3CAS2	1.0e-09	51.56	Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]

BLAST of Clc05G16895 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..86
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 6..37

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc05G16895.1	Clc05G16895.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding