Clc05G16660 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTGAAATTAGAAGCTCTGCTTCTTTCTGTTGCCAATTTCCTCCATTTCTCTTCTAAGTCTTTTCATCAAATGGCTCGTCTTGCAAATTTAAACGAGAAATTCTCCGCCATTCCCAACCTCCCGAAGCTTCAAAACACTCATAAGAGACTCAAAATTACTGGGTTTCTCAAGAAACAAACAGATGTCTCTTCTCATCAAATCTCATTGACAAGAAGATTGGCTTTAACCAGCCTTGTCTCTGTTGCTCTCTTTGGCAATGCATCCCCCGAGATCGCTTCTGCTAACGAGTACTGGCTCAACGGCCCTTTGCCTGTGCCTTCTGTTTACAACAGTAAGCTTTTTGATTGAACGAGTTTGCAACTTTCTATTTCTGTTTTTGTTTTCCTTATCCGGGTGCAAGTTGAAATTGGAAAATCTGAGTTGCTTTGGTTAGTTCTATGGTAAGTACTATGGAATTTGTGATGAATTCTTTGTAACAGACATCGCGAACGAGAACACGGGGACTCGGTCATTTCTGAAGACAGGGATATACATAGCTAACATAGGAACAGAAGGAAGAAAATACAGATTGAAGAAATATGCATTTGATCTTCTAGCTATGGCAGATTTGATTGGGAAAGATACGTTGAATTATGTTAGAAAGTATCTTCGACTCAAATCAACCTTCATGTACTACGACTTCGACAACGTTATCTCGGCAGCAGCAGAGGGTGAGAAGCAGCCTCTTGTTGATTTAGCGAACAGATTATTTGACAACTTCGAAAAGGTAAAAGGAAGAGAAGATGCAAAATTTCAGCAAATGTATGCAAAATTTCAAGCTGAAGTACCTTCTTTTGTGTTTTGCAGCTTGAAGATGCAGCAAAGCAAAAGAATCTGAGTGAAACTGAATCCTACTATCAACAGACAACACCAATACTTCAAGAAGTCATGGATAGAATGGCATAAGTTCGAAAAAATTTATTGATCAGAAGATTTTGACGGATCTGCTTGCTTTTCTATCGTTTTTCTGTTCTTGTTCATAATTAGTTTCCATTTTTCATCTGTATGTCAATGCGGCTTAAAGATGCAAAATCAAGACAAACAGTGCAGTGAGTCACAAATTATAGTTCAACTATTTGGGTTTTGTCTTAGAAGGAAAGGAGGACGATTGATATCGGGCAAACAAGGACAGACAATTTGCAGCATGCTTGGCACAATTACTGATGTTTAATTGTAAAACAAAAGTGAAGGGGAACAAAAACTCTTACTTTCATTGTTACAATCAGATCTCTTTTGCTATACACAACTAAGCCTAAGTCAGAATCATTCTCATATTTCATTATCAAATAGTTGATTTGCCAATGTATAGGCAATGTTTGAGCATAAATCTTAAGGTCGTGTATTGGTTAGACGCCGAGGAGTACCAATCTCACAAGCATTAACCCGGGCAGCAAAGCGAAGCGAGCAGAGTGATTCACTGGCCGAGGAGGAATCAGGAGAGATATTTACAAACATCAACGTCTTTGAATCTCCACCGAGACATGGCTG CTGAAATTAGAAGCTCTGCTTCTTTCTGTTGCCAATTTCCTCCATTTCTCTTCTAAGTCTTTTCATCAAATGGCTCGTCTTGCAAATTTAAACGAGAAATTCTCCGCCATTCCCAACCTCCCGAAGCTTCAAAACACTCATAAGAGACTCAAAATTACTGGGTTTCTCAAGAAACAAACAGATGTCTCTTCTCATCAAATCTCATTGACAAGAAGATTGGCTTTAACCAGCCTTGTCTCTGTTGCTCTCTTTGGCAATGCATCCCCCGAGATCGCTTCTGCTAACGAGTACTGGCTCAACGGCCCTTTGCCTGTGCCTTCTGTTTACAACAACATCGCGAACGAGAACACGGGGACTCGGTCATTTCTGAAGACAGGGATATACATAGCTAACATAGGAACAGAAGGAAGAAAATACAGATTGAAGAAATATGCATTTGATCTTCTAGCTATGGCAGATTTGATTGGGAAAGATACGTTGAATTATGTTAGAAAGTATCTTCGACTCAAATCAACCTTCATGTACTACGACTTCGACAACGTTATCTCGGCAGCAGCAGAGGGTGAGAAGCAGCCTCTTGTTGATTTAGCGAACAGATTATTTGACAACTTCGAAAAGCTTGAAGATGCAGCAAAGCAAAAGAATCTGAGTGAAACTGAATCCTACTATCAACAGACAACACCAATACTTCAAGAAGTCATGGATAGAATGGCATAAGTTCGAAAAAATTTATTGATCAGAAGATTTTGACGGATCTGCTTGCTTTTCTATCGTTTTTCTGTTCTTGTTCATAATTAGTTTCCATTTTTCATCTGTATGTCAATGCGGCTTAAAGATGCAAAATCAAGACAAACAGTGCAGTGAGTCACAAATTATAGTTCAACTATTTGGGTTTTGTCTTAGAAGGAAAGGAGGACGATTGATATCGGGCAAACAAGGACAGACAATTTGCAGCATGCTTGGCACAATTACTGATGTTTAATTGTAAAACAAAAGTGAAGGGGAACAAAAACTCTTACTTTCATTGTTACAATCAGATCTCTTTTGCTATACACAACTAAGCCTAAGTCAGAATCATTCTCATATTTCATTATCAAATAGTTGATTTGCCAATGTATAGGCAATGTTTGAGCATAAATCTTAAGGTCGTGTATTGGTTAGACGCCGAGGAGTACCAATCTCACAAGCATTAACCCGGGCAGCAAAGCGAAGCGAGCAGAGTGATTCACTGGCCGAGGAGGAATCAGGAGAGATATTTACAAACATCAACGTCTTTGAATCTCCACCGAGACATGGCTG ATGGCTCGTCTTGCAAATTTAAACGAGAAATTCTCCGCCATTCCCAACCTCCCGAAGCTTCAAAACACTCATAAGAGACTCAAAATTACTGGGTTTCTCAAGAAACAAACAGATGTCTCTTCTCATCAAATCTCATTGACAAGAAGATTGGCTTTAACCAGCCTTGTCTCTGTTGCTCTCTTTGGCAATGCATCCCCCGAGATCGCTTCTGCTAACGAGTACTGGCTCAACGGCCCTTTGCCTGTGCCTTCTGTTTACAACAACATCGCGAACGAGAACACGGGGACTCGGTCATTTCTGAAGACAGGGATATACATAGCTAACATAGGAACAGAAGGAAGAAAATACAGATTGAAGAAATATGCATTTGATCTTCTAGCTATGGCAGATTTGATTGGGAAAGATACGTTGAATTATGTTAGAAAGTATCTTCGACTCAAATCAACCTTCATGTACTACGACTTCGACAACGTTATCTCGGCAGCAGCAGAGGGTGAGAAGCAGCCTCTTGTTGATTTAGCGAACAGATTATTTGACAACTTCGAAAAGCTTGAAGATGCAGCAAAGCAAAAGAATCTGAGTGAAACTGAATCCTACTATCAACAGACAACACCAATACTTCAAGAAGTCATGGATAGAATGGCATAA MARLANLNEKFSAIPNLPKLQNTHKRLKITGFLKKQTDVSSHQISLTRRLALTSLVSVALFGNASPEIASANEYWLNGPLPVPSVYNNIANENTGTRSFLKTGIYIANIGTEGRKYRLKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAAEGEKQPLVDLANRLFDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA Homology
BLAST of Clc05G16660 vs. NCBI nr
Match: XP_038899633.1 (photosynthetic NDH subunit of lumenal location 3, chloroplastic [Benincasa hispida]) HSP 1 Score: 399.8 bits (1026), Expect = 1.5e-107 Identity = 203/215 (94.42%), Postives = 209/215 (97.21%), Query Frame = 0
BLAST of Clc05G16660 vs. NCBI nr
Match: XP_004151964.1 (photosynthetic NDH subunit of lumenal location 3, chloroplastic [Cucumis sativus] >KGN57960.1 hypothetical protein Csa_009832 [Cucumis sativus]) HSP 1 Score: 399.1 bits (1024), Expect = 2.5e-107 Identity = 205/215 (95.35%), Postives = 208/215 (96.74%), Query Frame = 0
BLAST of Clc05G16660 vs. NCBI nr
Match: XP_008454569.1 (PREDICTED: photosynthetic NDH subunit of lumenal location 3, chloroplastic [Cucumis melo] >KAA0046447.1 photosynthetic NDH subunit of lumenal location 3 [Cucumis melo var. makuwa] >TYJ97766.1 photosynthetic NDH subunit of lumenal location 3 [Cucumis melo var. makuwa]) HSP 1 Score: 397.5 bits (1020), Expect = 7.3e-107 Identity = 204/215 (94.88%), Postives = 209/215 (97.21%), Query Frame = 0
BLAST of Clc05G16660 vs. NCBI nr
Match: XP_022139520.1 (photosynthetic NDH subunit of lumenal location 3, chloroplastic [Momordica charantia]) HSP 1 Score: 380.9 bits (977), Expect = 7.0e-102 Identity = 197/218 (90.37%), Postives = 204/218 (93.58%), Query Frame = 0
BLAST of Clc05G16660 vs. NCBI nr
Match: KAG7015220.1 (Photosynthetic NDH subunit of lumenal location 3, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 375.9 bits (964), Expect = 2.3e-100 Identity = 194/218 (88.99%), Postives = 202/218 (92.66%), Query Frame = 0
BLAST of Clc05G16660 vs. ExPASy Swiss-Prot
Match: Q9SGH4 (Photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSL3 PE=1 SV=1) HSP 1 Score: 253.4 bits (646), Expect = 2.2e-66 Identity = 129/220 (58.64%), Postives = 164/220 (74.55%), Query Frame = 0
BLAST of Clc05G16660 vs. ExPASy Swiss-Prot
Match: Q9XFT3 (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBQ1 PE=1 SV=3) HSP 1 Score: 82.0 bits (201), Expect = 8.9e-15 Identity = 56/181 (30.94%), Postives = 93/181 (51.38%), Query Frame = 0
BLAST of Clc05G16660 vs. ExPASy Swiss-Prot
Match: Q41932 (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBQ2 PE=1 SV=2) HSP 1 Score: 71.2 bits (173), Expect = 1.6e-11 Identity = 56/187 (29.95%), Postives = 91/187 (48.66%), Query Frame = 0
BLAST of Clc05G16660 vs. ExPASy Swiss-Prot
Match: P83646 (Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. indica OX=39946 GN=OsI_025465 PE=1 SV=2) HSP 1 Score: 67.4 bits (163), Expect = 2.3e-10 Identity = 60/221 (27.15%), Postives = 104/221 (47.06%), Query Frame = 0
BLAST of Clc05G16660 vs. ExPASy Swiss-Prot
Match: Q0D5P8 (Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0544800 PE=2 SV=1) HSP 1 Score: 67.4 bits (163), Expect = 2.3e-10 Identity = 60/221 (27.15%), Postives = 104/221 (47.06%), Query Frame = 0
BLAST of Clc05G16660 vs. ExPASy TrEMBL
Match: A0A0A0L7N1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G414060 PE=3 SV=1) HSP 1 Score: 399.1 bits (1024), Expect = 1.2e-107 Identity = 205/215 (95.35%), Postives = 208/215 (96.74%), Query Frame = 0
BLAST of Clc05G16660 vs. ExPASy TrEMBL
Match: A0A5A7TX10 (Photosynthetic NDH subunit of lumenal location 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1251G00750 PE=3 SV=1) HSP 1 Score: 397.5 bits (1020), Expect = 3.5e-107 Identity = 204/215 (94.88%), Postives = 209/215 (97.21%), Query Frame = 0
BLAST of Clc05G16660 vs. ExPASy TrEMBL
Match: A0A1S3BZP3 (photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103494958 PE=3 SV=1) HSP 1 Score: 397.5 bits (1020), Expect = 3.5e-107 Identity = 204/215 (94.88%), Postives = 209/215 (97.21%), Query Frame = 0
BLAST of Clc05G16660 vs. ExPASy TrEMBL
Match: A0A6J1CCI9 (photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111010414 PE=3 SV=1) HSP 1 Score: 380.9 bits (977), Expect = 3.4e-102 Identity = 197/218 (90.37%), Postives = 204/218 (93.58%), Query Frame = 0
BLAST of Clc05G16660 vs. ExPASy TrEMBL
Match: A0A6J1FHS2 (photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111445892 PE=3 SV=1) HSP 1 Score: 375.2 bits (962), Expect = 1.9e-100 Identity = 193/218 (88.53%), Postives = 202/218 (92.66%), Query Frame = 0
BLAST of Clc05G16660 vs. TAIR 10
Match: AT3G01440.1 (PsbQ-like 1 ) HSP 1 Score: 253.4 bits (646), Expect = 1.6e-67 Identity = 129/220 (58.64%), Postives = 164/220 (74.55%), Query Frame = 0
BLAST of Clc05G16660 vs. TAIR 10
Match: AT4G21280.1 (photosystem II subunit QA ) HSP 1 Score: 82.0 bits (201), Expect = 6.3e-16 Identity = 55/180 (30.56%), Postives = 92/180 (51.11%), Query Frame = 0
BLAST of Clc05G16660 vs. TAIR 10
Match: AT4G21280.2 (photosystem II subunit QA ) HSP 1 Score: 82.0 bits (201), Expect = 6.3e-16 Identity = 56/181 (30.94%), Postives = 93/181 (51.38%), Query Frame = 0
BLAST of Clc05G16660 vs. TAIR 10
Match: AT4G05180.1 (photosystem II subunit Q-2 ) HSP 1 Score: 71.2 bits (173), Expect = 1.1e-12 Identity = 56/187 (29.95%), Postives = 91/187 (48.66%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|