Clc05G15560 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAAAAAAAAAGAAAAATCCGAATTCACACAAGATTCATTTCAAATAGTGTTTGGCATTGCCCCACAAGTTAATGCAAGCTTTCCTGTTTCATGCCCAAATCCTTCCTTTCTCTTTTCTTCTCTCATTGGTCTTTCAGTCAGTCTCTCTCTTTCCATTACAACTTTTCCACTTCCCTCAACAATCGTCCTCCTTCTTCTTCTTCTTCTTCCCATTCCTCTCTCAAATCCCATTTTCACTCCCTGATGATCACACTAGCATCAACAAGTTAACAATAGATCATAGCACAACCTTCCCATCAATGGGTTCCTGTGTCTCAATCCATAGAAATTCCGATTCCCCCATGAAATTCAGACTCTCACTTCCCTCCAAAACCAACGATATGGCAATTCCCCCTTCACCCATCAAACATATCAACACTCCTATCAACGGCAGCGTCTTCCTCAAATCTCAGACTTCCCCTTCTCACTTCGGTACTGCTCCTTTTCTTCTTCTTCTTCTTCACCTTCTACAACTATAATCACCTGTGTTTTCTTCTTTTTGTTTCGTTTCCCTTAATGCTTTCTTGTTGATTTGTTTTCGTTGACTGATGAACTTTGATGCTTTGCAATCAGTGCTTAGAAAGATTTTCCCCTCGTTACCCCACTCTTCTCAGAACCTAAATTATATGCGATCTAAAGTGTTTGCTTCTTGCGTGTCCCTGATTTGACTTTGATTGTTTTCACATGATCTAACCCTGTTTTCTTCTTCTAATTGAATATCTTATTGAATCATTGCCTTTTGGATATATTGTTTAATTGGTATGATAAAGTTAATCTAGGCCCCATTTGTTTATATTATTAAAAAAAACCTGAGAAACCGATCTCTTTTCCAATTTAAATCTCCACAGATCGATGAACAGGAGAAGGATTTTACCTTTTTCTTTTCCTTTCTGACAATTATTCATTAAAATAATTAGAGAACCCCCAGATTTCTTTTCTTATGGTTTGATGATGAAATTTTGAGAAGGAATTGACACTGTTCTGTGTAGAGATGGATAACTCCTTCCTTTCTCCTGTGGAAGCTCCGTTTCTAATGAAGCTACGTATTGTTATTAGTGGATTTTGTGATTAATTATCAACAGATGAAAAGATTAAGAGGAAAAAAGTGTTATAGAGATTTGTTAGTTCAGTTTACTGAGTTTCAATCATATCTGATCGGGTATTTTATAAAATGCCTTTGTGTTTATTAGTTGATCCTGTAATTACTTTTTTAACTTTAAAATAAAATAAGGGGTTTGTTTCCTTTGATTTGTGTTTCTTATAATTTGTTGCATAGTGGTGTTAGATAAGATTACATATGTCCCTCTTTTGATAAGGATGTTTTCATGAGTTTCTCTCCATCTCACATGAACCATGCCAGAGTTCTTGGAAGGTGAGGAATGCTTACTTTACAGGCTTCAAGGATTCTCATTTATTAAGCTTGAACTCGGGGACTTGAAGAACTTCTCTCCTCTACATCTTATGTTATCAACAGGACCGCCTTTCTGGGCAAATTTATAACTATTCCTAGATGCTAGCTTATTACAAGTTTGGTTTGGCCCTACCTATTTGGTTTTGGGGGCAATGGAATCAATTGCCTTTATAGTCTTTATCTGAGGAAGGAGAAAATGATGGATGGAAGTAAGACTTCTCTTCCTAGAATTGCACTTTCTGTTCTAGGATTTCTTTCACAAGGATGTTGTCTCAATTCCATTGAGAACTTCACATGTTTATTTACTCATCATTCCTATGTTTCGAGTTCCAAATTTTTATTGTTATGATGTGGTGACCCAAACCCTTTATGACCAAACTTGAGAAGTCTTTGTTGTGTTAACTTTGAGATTGTGGCTTTCATAGGCTACCATTAAGGCTCTTTCTAGCTTATATTTGTCATGCTGAGTTTTTTATTTTATATTCTCTACTGAAAGAGTTTTACACACTAGTCCATGTGTTTTATATACATTCAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCTATCTATCACACCTATTTTTATATAAACTCTTAAATGGCTGTTTTTTGAAAGAACTAAGTTGACATTAGTGCTTTGCTATTCTCCCATAGGTAGCAAAGATGAAGCGTTTTTCGATTCCCGAGGCTGGTTGGATTCAGATTGCGAAGATGATTTCTACAGTGTTAATGGTGGTAAGTAGACATTGGAATTCCTTTTATGCCGTTTGCCTTTTTCATCTCCTCTCCTAGAGTATTCAATTGCAATGGCTGCAGATTTCACTCCTTCACGAGGAAACACTCCAGTTCACTCCATCTCCTCCGGTACTCCTCGGATCAACCAAGTTCATGTCATTGATGATCGAACTCCGGTCACCATTCCCGAACTGTCACCAACAGGAAAGAAGAAGCTGGCTGATCTTTTCAGGGAGAGTTCTAGAAATGGCACTGACGTACAAGCCAAACAAACTCTGAATGAACTTGCCCTGCAGTCGAATCCTGAAACGCCTTACATGTCAGGAAAAAACTCTGTATGCAGCAGCGAGAGGACCCCGAATGGAGATGTGATTGAGAAGGAGAGGCCATTTGGATCCGTACAATGCTGCCTCCCAAGCTTGGGGTCATGTCGTAGCTTCGGTGGTGACCGGAGGAAGAAGGCAAGTCCTGCCATAGCTGTATAATACAAGCTTTGATTGAAGATGCCATAAGCTGCAAATTCCCCTCTGATTCTGCCTTTGTGAGACCCCAAAGCTCATGGAGCTCACAATTGTTTAGAAATGTGTAAAGTTCTGAAATATCAGATACAGATGCAGCAGCAGTGATCAAGAGATATTGCTGTTGTTGAAGGCAATGGTTATATATATATATGTTAGATTCATAGTACAGTGTCTCATATCATATCAGAATATGTAAGAAAACAAAGAGAGAGGAAGAAGAAAGGGAAAGAAAGTAATAAGGCCTTTTTTTTTTTTT AAAAAAAAAAGAAAAATCCGAATTCACACAAGATTCATTTCAAATAGTGTTTGGCATTGCCCCACAAGTTAATGCAAGCTTTCCTGTTTCATGCCCAAATCCTTCCTTTCTCTTTTCTTCTCTCATTGGTCTTTCAGTCAGTCTCTCTCTTTCCATTACAACTTTTCCACTTCCCTCAACAATCGTCCTCCTTCTTCTTCTTCTTCTTCCCATTCCTCTCTCAAATCCCATTTTCACTCCCTGATGATCACACTAGCATCAACAAGTTAACAATAGATCATAGCACAACCTTCCCATCAATGGGTTCCTGTGTCTCAATCCATAGAAATTCCGATTCCCCCATGAAATTCAGACTCTCACTTCCCTCCAAAACCAACGATATGGCAATTCCCCCTTCACCCATCAAACATATCAACACTCCTATCAACGGCAGCGTCTTCCTCAAATCTCAGACTTCCCCTTCTCACTTCGGTAGCAAAGATGAAGCGTTTTTCGATTCCCGAGGCTGGTTGGATTCAGATTGCGAAGATGATTTCTACAGTGTTAATGGTGATTTCACTCCTTCACGAGGAAACACTCCAGTTCACTCCATCTCCTCCGGTACTCCTCGGATCAACCAAGTTCATGTCATTGATGATCGAACTCCGGTCACCATTCCCGAACTGTCACCAACAGGAAAGAAGAAGCTGGCTGATCTTTTCAGGGAGAGTTCTAGAAATGGCACTGACGTACAAGCCAAACAAACTCTGAATGAACTTGCCCTGCAGTCGAATCCTGAAACGCCTTACATGTCAGGAAAAAACTCTGTATGCAGCAGCGAGAGGACCCCGAATGGAGATGTGATTGAGAAGGAGAGGCCATTTGGATCCGTACAATGCTGCCTCCCAAGCTTGGGGTCATGTCGTAGCTTCGGTGGTGACCGGAGGAAGAAGGCAAGTCCTGCCATAGCTGTATAATACAAGCTTTGATTGAAGATGCCATAAGCTGCAAATTCCCCTCTGATTCTGCCTTTGTGAGACCCCAAAGCTCATGGAGCTCACAATTGTTTAGAAATGTGTAAAGTTCTGAAATATCAGATACAGATGCAGCAGCAGTGATCAAGAGATATTGCTGTTGTTGAAGGCAATGGTTATATATATATATGTTAGATTCATAGTACAGTGTCTCATATCATATCAGAATATGTAAGAAAACAAAGAGAGAGGAAGAAGAAAGGGAAAGAAAGTAATAAGGCCTTTTTTTTTTTTT ATGCAAGCTTTCCTGTTTCATGCCCAAATCCTTCCTTTCTCTTTTCTTCTCTCATTGGTCTTTCAGTCAGTCTCTCTCTTTCCATTACAACTTTTCCACTTCCCTCAACAATCGTCCTCCTTCTTCTTCTTCTTCTTCCCATTCCTCTCTCAAATCCCATTTTCACTCCCTGATGATCACACTAGCATCAACAAGTTAACAATAGATCATAGCACAACCTTCCCATCAATGGGTTCCTGTGTCTCAATCCATAGAAATTCCGATTCCCCCATGAAATTCAGACTCTCACTTCCCTCCAAAACCAACGATATGGCAATTCCCCCTTCACCCATCAAACATATCAACACTCCTATCAACGGCAGCGTCTTCCTCAAATCTCAGACTTCCCCTTCTCACTTCGGTAGCAAAGATGAAGCGTTTTTCGATTCCCGAGGCTGGTTGGATTCAGATTGCGAAGATGATTTCTACAGTGTTAATGGTGATTTCACTCCTTCACGAGGAAACACTCCAGTTCACTCCATCTCCTCCGGTACTCCTCGGATCAACCAAGTTCATGTCATTGATGATCGAACTCCGGTCACCATTCCCGAACTGTCACCAACAGGAAAGAAGAAGCTGGCTGATCTTTTCAGGGAGAGTTCTAGAAATGGCACTGACGTACAAGCCAAACAAACTCTGAATGAACTTGCCCTGCAGTCGAATCCTGAAACGCCTTACATGTCAGGAAAAAACTCTGTATGCAGCAGCGAGAGGACCCCGAATGGAGATGTGATTGAGAAGGAGAGGCCATTTGGATCCGTACAATGCTGCCTCCCAAGCTTGGGGTCATGTCGTAGCTTCGGTGGTGACCGGAGGAAGAAGGCAAGTCCTGCCATAGCTGTATAA MQAFLFHAQILPFSFLLSLVFQSVSLFPLQLFHFPQQSSSFFFFFFPFLSQIPFSLPDDHTSINKLTIDHSTTFPSMGSCVSIHRNSDSPMKFRLSLPSKTNDMAIPPSPIKHINTPINGSVFLKSQTSPSHFGSKDEAFFDSRGWLDSDCEDDFYSVNGDFTPSRGNTPVHSISSGTPRINQVHVIDDRTPVTIPELSPTGKKKLADLFRESSRNGTDVQAKQTLNELALQSNPETPYMSGKNSVCSSERTPNGDVIEKERPFGSVQCCLPSLGSCRSFGGDRRKKASPAIAV Homology
BLAST of Clc05G15560 vs. NCBI nr
Match: XP_038901054.1 (uncharacterized protein At3g27210-like [Benincasa hispida]) HSP 1 Score: 389.4 bits (999), Expect = 2.7e-104 Identity = 197/220 (89.55%), Postives = 202/220 (91.82%), Query Frame = 0
BLAST of Clc05G15560 vs. NCBI nr
Match: XP_008450086.1 (PREDICTED: uncharacterized protein At3g27210-like [Cucumis melo]) HSP 1 Score: 376.7 bits (966), Expect = 1.8e-100 Identity = 193/220 (87.73%), Postives = 198/220 (90.00%), Query Frame = 0
BLAST of Clc05G15560 vs. NCBI nr
Match: XP_011651566.1 (uncharacterized protein At3g27210 isoform X1 [Cucumis sativus]) HSP 1 Score: 376.3 bits (965), Expect = 2.4e-100 Identity = 192/220 (87.27%), Postives = 199/220 (90.45%), Query Frame = 0
BLAST of Clc05G15560 vs. NCBI nr
Match: KAG6581091.1 (hypothetical protein SDJN03_21093, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 346.7 bits (888), Expect = 2.0e-91 Identity = 180/226 (79.65%), Postives = 195/226 (86.28%), Query Frame = 0
BLAST of Clc05G15560 vs. NCBI nr
Match: XP_023529186.1 (uncharacterized protein At3g27210-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 345.9 bits (886), Expect = 3.4e-91 Identity = 182/227 (80.18%), Postives = 196/227 (86.34%), Query Frame = 0
BLAST of Clc05G15560 vs. ExPASy Swiss-Prot
Match: Q9LK32 (Uncharacterized protein At3g27210 OS=Arabidopsis thaliana OX=3702 GN=Y-2 PE=1 SV=1) HSP 1 Score: 106.7 bits (265), Expect = 4.6e-22 Identity = 81/203 (39.90%), Postives = 103/203 (50.74%), Query Frame = 0
BLAST of Clc05G15560 vs. ExPASy TrEMBL
Match: A0A1S3BP47 (uncharacterized protein At3g27210-like OS=Cucumis melo OX=3656 GN=LOC103491777 PE=4 SV=1) HSP 1 Score: 376.7 bits (966), Expect = 8.8e-101 Identity = 193/220 (87.73%), Postives = 198/220 (90.00%), Query Frame = 0
BLAST of Clc05G15560 vs. ExPASy TrEMBL
Match: A0A0A0LB55 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G588480 PE=4 SV=1) HSP 1 Score: 376.3 bits (965), Expect = 1.1e-100 Identity = 192/220 (87.27%), Postives = 199/220 (90.45%), Query Frame = 0
BLAST of Clc05G15560 vs. ExPASy TrEMBL
Match: A0A6J1J5K2 (uncharacterized protein At3g27210-like OS=Cucurbita maxima OX=3661 GN=LOC111481493 PE=4 SV=1) HSP 1 Score: 340.9 bits (873), Expect = 5.3e-90 Identity = 179/227 (78.85%), Postives = 196/227 (86.34%), Query Frame = 0
BLAST of Clc05G15560 vs. ExPASy TrEMBL
Match: A0A6J1F463 (uncharacterized protein At3g27210 OS=Cucurbita moschata OX=3662 GN=LOC111442001 PE=4 SV=1) HSP 1 Score: 340.5 bits (872), Expect = 7.0e-90 Identity = 179/227 (78.85%), Postives = 195/227 (85.90%), Query Frame = 0
BLAST of Clc05G15560 vs. ExPASy TrEMBL
Match: A0A6J1EK04 (uncharacterized protein At3g27210-like OS=Cucurbita moschata OX=3662 GN=LOC111435186 PE=4 SV=1) HSP 1 Score: 330.9 bits (847), Expect = 5.5e-87 Identity = 175/235 (74.47%), Postives = 191/235 (81.28%), Query Frame = 0
BLAST of Clc05G15560 vs. TAIR 10
Match: AT3G27210.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G40860.1); Has 133 Blast hits to 98 proteins in 25 species: Archae - 0; Bacteria - 6; Metazoa - 32; Fungi - 7; Plants - 70; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). ) HSP 1 Score: 106.7 bits (265), Expect = 3.3e-23 Identity = 81/203 (39.90%), Postives = 103/203 (50.74%), Query Frame = 0
BLAST of Clc05G15560 vs. TAIR 10
Match: AT5G40860.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27210.1); Has 69 Blast hits to 69 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). ) HSP 1 Score: 89.7 bits (221), Expect = 4.1e-18 Identity = 75/210 (35.71%), Postives = 97/210 (46.19%), Query Frame = 0
BLAST of Clc05G15560 vs. TAIR 10
Match: AT3G01860.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27210.1); Has 66 Blast hits to 66 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 87.8 bits (216), Expect = 1.6e-17 Identity = 79/231 (34.20%), Postives = 110/231 (47.62%), Query Frame = 0
BLAST of Clc05G15560 vs. TAIR 10
Match: AT3G01860.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27210.1); Has 64 Blast hits to 64 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 81.3 bits (199), Expect = 1.5e-15 Identity = 60/163 (36.81%), Postives = 80/163 (49.08%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
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