Clc05G15140 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc05G15140
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	AvrRpt-cleavage domain-containing protein
Location	ClcChr05: 17252427 .. 17253157 (+)
RNA-Seq Expression	Clc05G15140
Synteny	Clc05G15140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTGCCTTGTTTGATATTGATACCCACATCAGCAGAATATATTTCATTGCTTTCACAGAAATGCATGGCCAAAAGCAATTACAAGATAGGCACAGATCTACACATAAACATGGAGCATTCTGTGCAAGAGAAAAGTGCTCTTTTAAAAGCAATGGAAGAACTGACAAACATGAGGATTCACATGTATAGTTATCAATGGAAAAGATCTGAATTCTGATATATGCACTTTTCTAATGTCTATAGCAGGATAAAGGTCGCCCCTTGCCGAAGTTCGGCGAGTGGGATGTCAACAATCCAGCCTCCGCCGAAGGATTTACAGTAATATTTAGCAAAGCTAGAGATGAGAAGAAGTCAAATGAGGCTTCTGGGAACACAGGAGCCAAAAACAATACATCCAGACCAGAAGAGAATTATCAATATTCTCCCATGGTAAGTAATATCACTAACTAATTATAGTTGTTAGCCTATGCACAAAAAAACGCAAGCAACTGATTGAAACATTATACCGTTGACTAAAAGATTAAAAGTTTGAATTCAAAATATATATACACATATATATCTCACTAACCTACTCGGCTTTGGCATCTTATCACGATCAGGTAAGAATTTACTATAAGTTTTTGTGCTTGGATGCAGAAAAAATGGTTTTGCTGTTTCTGAAACTGCTAGGGAGTGATGGTGGTGGTGACAACAGACATGGTGGAAGAAGGCTAAAGAAAGATTTATGA

mRNA sequence

ATGCCTGCCTTGTTTGATATTGATACCCACATCAGCAGAATATATTTCATTGCTTTCACAGAAATGCATGGCCAAAAGCAATTACAAGATAGGCACAGATCTACACATAAACATGGAGCATTCTGTGCAAGAGAAAAGTGCTCTTTTAAAAGCAATGGAAGAACTGACAAACATGAGGATTCACATGATAAAGGTCGCCCCTTGCCGAAGTTCGGCGAGTGGGATGTCAACAATCCAGCCTCCGCCGAAGGATTTACAGTAATATTTAGCAAAGCTAGAGATGAGAAGAAGTCAAATGAGGCTTCTGGGAACACAGGAGCCAAAAACAATACATCCAGACCAGAAGAGAATTATCAATATTCTCCCATGGTAAGAATTTACTATAAGTTTTTGTGCTTGGATGCAGAAAAAATGGTTTTGCTGTTTCTGAAACTGCTAGGGAGTGATGGTGGTGGTGACAACAGACATGGTGGAAGAAGGCTAAAGAAAGATTTATGA

Coding sequence (CDS)

ATGCCTGCCTTGTTTGATATTGATACCCACATCAGCAGAATATATTTCATTGCTTTCACAGAAATGCATGGCCAAAAGCAATTACAAGATAGGCACAGATCTACACATAAACATGGAGCATTCTGTGCAAGAGAAAAGTGCTCTTTTAAAAGCAATGGAAGAACTGACAAACATGAGGATTCACATGATAAAGGTCGCCCCTTGCCGAAGTTCGGCGAGTGGGATGTCAACAATCCAGCCTCCGCCGAAGGATTTACAGTAATATTTAGCAAAGCTAGAGATGAGAAGAAGTCAAATGAGGCTTCTGGGAACACAGGAGCCAAAAACAATACATCCAGACCAGAAGAGAATTATCAATATTCTCCCATGGTAAGAATTTACTATAAGTTTTTGTGCTTGGATGCAGAAAAAATGGTTTTGCTGTTTCTGAAACTGCTAGGGAGTGATGGTGGTGGTGACAACAGACATGGTGGAAGAAGGCTAAAGAAAGATTTATGA

Protein sequence

MPALFDIDTHISRIYFIAFTEMHGQKQLQDRHRSTHKHGAFCAREKCSFKSNGRTDKHEDSHDKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEASGNTGAKNNTSRPEENYQYSPMVRIYYKFLCLDAEKMVLLFLKLLGSDGGGDNRHGGRRLKKDL

Homology

[Close]

BLAST of Clc05G15140 vs. NCBI nr
Match: KAG7022694.1 (hypothetical protein SDJN02_16428, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 154.1 bits (388), Expect = 1.1e-33
Identity = 78/104 (75.00%), Postives = 85/104 (81.73%), Query Frame = 0


Query: 63  DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEASGNTGAKNNTSRPEENYQYSP 122
           DKGRPLPKFGEWDVNNPASAEGFTVIFSKAR+EKKSNEASGN  AKNN   PEENYQYSP
Sbjct: 3   DKGRPLPKFGEWDVNNPASAEGFTVIFSKARNEKKSNEASGNIAAKNNAPEPEENYQYSP 62

Query: 123 M----VRIYYKFLCLDAEKMVLLFLKLLGSDGGGDNRHGGRRLK 163
           M    + +++       EKMVLL LKL+GSDGGGDNRHG RR+K
Sbjct: 63  MNFLQILVFWMQKVFSHEKMVLLSLKLIGSDGGGDNRHGERRVK 106

[Close]

BLAST of Clc05G15140 vs. NCBI nr
Match: XP_038883812.1 (protein NOI4-like isoform X1 [Benincasa hispida])

HSP 1 Score: 125.2 bits (313), Expect = 5.3e-25
Identity = 61/68 (89.71%), Postives = 63/68 (92.65%), Query Frame = 0


Query: 63  DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEASGNTGAKNNTSRPEENYQYSP 122
           DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEA GNTGAKNNTSRPEENYQYSP
Sbjct: 30  DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEAPGNTGAKNNTSRPEENYQYSP 89

Query: 123 MVRIYYKF 131
           M + +  F
Sbjct: 90  MKKWFCCF 97

[Close]

BLAST of Clc05G15140 vs. NCBI nr
Match: XP_038883820.1 (protein NOI4-like isoform X2 [Benincasa hispida])

HSP 1 Score: 125.2 bits (313), Expect = 5.3e-25
Identity = 61/68 (89.71%), Postives = 63/68 (92.65%), Query Frame = 0


Query: 63  DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEASGNTGAKNNTSRPEENYQYSP 122
           DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEA GNTGAKNNTSRPEENYQYSP
Sbjct: 12  DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEAPGNTGAKNNTSRPEENYQYSP 71

Query: 123 MVRIYYKF 131
           M + +  F
Sbjct: 72  MKKWFCCF 79

[Close]

BLAST of Clc05G15140 vs. NCBI nr
Match: KAA0066959.1 (RPM1-interacting protein 4-like [Cucumis melo var. makuwa] >TYK30238.1 RPM1-interacting protein 4-like [Cucumis melo var. makuwa])

HSP 1 Score: 121.3 bits (303), Expect = 7.7e-24
Identity = 59/64 (92.19%), Postives = 60/64 (93.75%), Query Frame = 0


Query: 60  DSHDKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEASGNTGAKNNTSRPEENYQ 119
           DS DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEA GNT AK+NTSR EENYQ
Sbjct: 18  DSQDKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEAPGNTAAKDNTSRQEENYQ 77

Query: 120 YSPM 124
           YSPM
Sbjct: 78  YSPM 81

[Close]

BLAST of Clc05G15140 vs. NCBI nr
Match: KAG7017799.1 (RPM1-interacting protein 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 121.3 bits (303), Expect = 7.7e-24
Identity = 58/62 (93.55%), Postives = 59/62 (95.16%), Query Frame = 0


Query: 63  DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEASGNTGAKNNTSRPEENYQYSP 122
           D+GRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEA GNT AKNN SRPEENYQYSP
Sbjct: 4   DRGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEAPGNTAAKNNASRPEENYQYSP 63

Query: 123 MV 125
           MV
Sbjct: 64  MV 65

[Close]

BLAST of Clc05G15140 vs. ExPASy Swiss-Prot
Match: O22633 (Protein NOI4 OS=Arabidopsis thaliana OX=3702 GN=NOI4 PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 6.4e-13
Identity = 35/44 (79.55%), Postives = 39/44 (88.64%), Query Frame = 0


Query: 63  DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEASGNTG 107
           DKGRPLPKFGEWDVN+PASAEGFTVIF+KARDEKK+    G+ G
Sbjct: 3   DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSPG 46

[Close]

BLAST of Clc05G15140 vs. ExPASy Swiss-Prot
Match: Q8GYN5 (RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 4.9e-05
Identity = 25/60 (41.67%), Postives = 39/60 (65.00%), Query Frame = 0


Query: 59  EDSHDKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSN-EASGNTGAKNNTSRPEEN 118
           ++S +K   +PKFG+WD NNP+SA+G+T IF+K R+E+ S    SG++    + S    N
Sbjct: 139 DESPEKVTVVPKFGDWDENNPSSADGYTHIFNKVREERSSGANVSGSSRTPTHQSSRNPN 198

[Close]

BLAST of Clc05G15140 vs. ExPASy TrEMBL
Match: A0A5D3E371 (RPM1-interacting protein 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold595G00620 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 3.7e-24
Identity = 59/64 (92.19%), Postives = 60/64 (93.75%), Query Frame = 0


Query: 60  DSHDKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEASGNTGAKNNTSRPEENYQ 119
           DS DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEA GNT AK+NTSR EENYQ
Sbjct: 18  DSQDKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEAPGNTAAKDNTSRQEENYQ 77

Query: 120 YSPM 124
           YSPM
Sbjct: 78  YSPM 81

[Close]

BLAST of Clc05G15140 vs. ExPASy TrEMBL
Match: A0A0A0LDP9 (AvrRpt-cleavage domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G595220 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 4.1e-23
Identity = 58/68 (85.29%), Postives = 61/68 (89.71%), Query Frame = 0


Query: 63  DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEASGNTGAKNNTSRPEENYQYSP 122
           DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEA GNT AK+NTSR EENYQYSP
Sbjct: 4   DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEAPGNTAAKDNTSRQEENYQYSP 63

Query: 123 MVRIYYKF 131
           M + +  F
Sbjct: 64  MKKWFCCF 71

[Close]

BLAST of Clc05G15140 vs. ExPASy TrEMBL
Match: A0A5J5AK52 (AvrRpt-cleavage domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_004861 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.2e-16
Identity = 47/71 (66.20%), Postives = 57/71 (80.28%), Query Frame = 0


Query: 61  SHDKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEASGNTG---AKNNTSRPEEN 120
           S DKGRPLPKFGEWDVNNPASA+GFTVIF+KARD+KK+N A+G  G     +NTS+  EN
Sbjct: 3   SQDKGRPLPKFGEWDVNNPASADGFTVIFAKARDDKKTNGAAGPGGPSQKNDNTSKQNEN 62

Query: 121 YQYSPMVRIYY 129
           YQY PM + ++
Sbjct: 63  YQYPPMEKKWF 73

[Close]

BLAST of Clc05G15140 vs. ExPASy TrEMBL
Match: A0A5J5BYY8 (AvrRpt-cleavage domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_004561 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 2.9e-16
Identity = 47/75 (62.67%), Postives = 56/75 (74.67%), Query Frame = 0


Query: 61  SHDKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEASGNTGA-------KNNTSR 120
           S DKGRPLPKFGEWDVNNPASA+GFTVIF+KARD+KK+N A    G        KN+ S+
Sbjct: 3   SQDKGRPLPKFGEWDVNNPASADGFTVIFAKARDDKKTNGAGAGAGGGGGGPTQKNDNSK 62

Query: 121 PEENYQYSPMVRIYY 129
             ENYQYSPM + ++
Sbjct: 63  QNENYQYSPMEKKWF 77

[Close]

BLAST of Clc05G15140 vs. ExPASy TrEMBL
Match: W9S8M1 (AvrRpt-cleavage domain-containing protein OS=Morus notabilis OX=981085 GN=L484_017683 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 4.9e-16
Identity = 48/70 (68.57%), Postives = 54/70 (77.14%), Query Frame = 0


Query: 61  SHDKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEASGNTGA------KNNTSRP 120
           S DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSN    ++GA       +N+++P
Sbjct: 3   SQDKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNGVVSSSGATTTTQKNDNSAKP 62

Query: 121 EENYQYSPMV 125
            EN  Y PMV
Sbjct: 63  SENCDYPPMV 72

[Close]

BLAST of Clc05G15140 vs. TAIR 10
Match: AT5G63270.1 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 76.6 bits (187), Expect = 2.0e-14
Identity = 38/57 (66.67%), Postives = 45/57 (78.95%), Query Frame = 0


Query: 61  SHDKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEASGNTGAKNNTSRPEEN 118
           + +KG+PLPKFGEWDVNNPASAEGFTVIFSKA DEKK+ +ASG     N+   P+ N
Sbjct: 2   AENKGKPLPKFGEWDVNNPASAEGFTVIFSKASDEKKTKKASG--AGPNSLVSPQRN 56

[Close]

BLAST of Clc05G15140 vs. TAIR 10
Match: AT5G55850.3 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 76.3 bits (186), Expect = 2.6e-14
Identity = 36/47 (76.60%), Postives = 40/47 (85.11%), Query Frame = 0


Query: 60  DSHDKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEASGNTG 107
           D  DKGRPLPKFGEWDVN+PASAEGFTVIF+KARDEKK+    G+ G
Sbjct: 16  DWRDKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSPG 62

[Close]

BLAST of Clc05G15140 vs. TAIR 10
Match: AT5G55850.2 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 75.1 bits (183), Expect = 5.9e-14
Identity = 46/93 (49.46%), Postives = 54/93 (58.06%), Query Frame = 0


Query: 60  DSHDKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEASGNTG------AKNNTSR 119
           D  DKGRPLPKFGEWDVN+PASAEGFTVIF+KARDEKK+    G+ G       K+    
Sbjct: 16  DWRDKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSPGKSSEGHVKSGGGD 75

Query: 120 PEENYQYSPMVRIYYKFLC--LDAEKMVLLFLK 145
           P +      M  ++    C  L   KM LL  K
Sbjct: 76  PSKPQPVKKMALLHASSSCGLLTDTKMDLLAAK 108

[Close]

BLAST of Clc05G15140 vs. TAIR 10
Match: AT5G55850.1 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 74.3 bits (181), Expect = 1.0e-13
Identity = 45/90 (50.00%), Postives = 53/90 (58.89%), Query Frame = 0


Query: 63  DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEASGNTG------AKNNTSRPEE 122
           DKGRPLPKFGEWDVN+PASAEGFTVIF+KARDEKK+    G+ G       K+    P +
Sbjct: 3   DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSPGKSSEGHVKSGGGDPSK 62

Query: 123 NYQYSPMVRIYYKFLC--LDAEKMVLLFLK 145
                 M  ++    C  L   KM LL  K
Sbjct: 63  PQPVKKMALLHASSSCGLLTDTKMDLLAAK 92

[Close]

BLAST of Clc05G15140 vs. TAIR 10
Match: AT2G04410.1 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 71.2 bits (173), Expect = 8.5e-13
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = 0


Query: 63  DKGRPLPKFGEWDVNNPASAEGFTVIFSKARDEKKSNEASGNTG 107
           DKGRPLPKFGEWDVN+P+SAEGFTVIF+KAR+EKK    S + G
Sbjct: 3   DKGRPLPKFGEWDVNDPSSAEGFTVIFNKARNEKKGGGKSDSPG 46

The following BLAST results are available for this feature:

BLAST of Clc05G15140 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7022694.1	1.1e-33	75.00	hypothetical protein SDJN02_16428, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_038883812.1	5.3e-25	89.71	protein NOI4-like isoform X1 [Benincasa hispida]	[more]
XP_038883820.1	5.3e-25	89.71	protein NOI4-like isoform X2 [Benincasa hispida]	[more]
KAA0066959.1	7.7e-24	92.19	RPM1-interacting protein 4-like [Cucumis melo var. makuwa] >TYK30238.1 RPM1-inte...	[more]
KAG7017799.1	7.7e-24	93.55	RPM1-interacting protein 4, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Clc05G15140 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22633	6.4e-13	79.55	Protein NOI4 OS=Arabidopsis thaliana OX=3702 GN=NOI4 PE=1 SV=1	[more]
Q8GYN5	4.9e-05	41.67	RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1	[more]

BLAST of Clc05G15140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E371	3.7e-24	92.19	RPM1-interacting protein 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A0A0LDP9	4.1e-23	85.29	AvrRpt-cleavage domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G59...	[more]
A0A5J5AK52	2.2e-16	66.20	AvrRpt-cleavage domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_0...	[more]
A0A5J5BYY8	2.9e-16	62.67	AvrRpt-cleavage domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_0...	[more]
W9S8M1	4.9e-16	68.57	AvrRpt-cleavage domain-containing protein OS=Morus notabilis OX=981085 GN=L484_0...	[more]

BLAST of Clc05G15140 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G63270.1	2.0e-14	66.67	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G55850.3	2.6e-14	76.60	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G55850.2	5.9e-14	49.46	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G55850.1	1.0e-13	50.00	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT2G04410.1	8.5e-13	75.00	RPM1-interacting protein 4 (RIN4) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008700	RIN4, pathogenic type III effector avirulence factor Avr cleavage site	PFAM	PF05627	AvrRpt-cleavage	coord: 63..98 e-value: 1.4E-22 score: 78.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..77
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..115
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..70
None	No IPR available	PANTHER	PTHR33159:SF39	RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN	coord: 63..116
IPR040387	RPM1-interacting protein 4/NOI4	PANTHER	PTHR33159	RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN	coord: 63..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc05G15140.2	Clc05G15140.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005886	plasma membrane