Clc05G14163 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCAGCGCCAGTTCGACGCTACCGTGACGCTTTTTCCCAAGAGCATCACTCCAGCTTAGCGCAGCAACACCAACGCGACGTTGTGGCACGGCGTCAATTGTAGGATTTTATGATGCACAGCGCTGCAAGTTCCCCTTACTTGATCGAACAACCCAAACTTTAGTTATTTCAACTACATAAAATGATCTTTCAAATTGGTCAAGACTCTCCACTTTATGGCCACTCTCTCTATGGTACCAATTATTGCTTCATTGAATTCGCTTCATTAGTAGGTTCACAATTCGACTTTGATCGTTATGGACTGGTACTAAGATCTAGTCTACCATCCTACAGCGCAGCGACACCACCTTTTGATGTCGGACAGCGCAGTGGCACCATTGACCAGTGCCGCAAAGTTCCTTTATAGCCTTACTTGTGTGTGTTGATGATGAAGGGATCGAATCCCCAGCAAAAGTGTTTAATCACCTTTTGCTTTGATTTTCTTTTAAATTAAAATTACAGAGAAAGAAATCTAGAATTGTAGAAACTAAATAGGCTATGAATTCATGGTGGTTAATAGAATTAAAGGAAGAAAAGCTAATTACCTTTGTTGAAACCTTTTCAACAAATCTTTTTCTCCAACAAGTTGAAGGTCTCCCTTCTTTGTGAAAACGTTTCCAAAAGGTCTTTCTCACTATATCTCTTGGGAAGGCACCAACTTGAGGGGGTCTTTCTTGAAAGAGATAGGGAATTGAGAGAGAGATCAAGAGAAAAATCATAGAGAATTTTTCTATTATTATGTGAGAGAGTAAAGAGAAAAGGAATAGCTTTTGGGAAAAAAAAACTATATGCCAAAATAACTCCCATTTGGGATTTAACGCATGACTCCCCACCTCCCTTGACTCTTAAATTAAGGGGAAATTAATTAATTAATTAATTATTAACAATTAATTTAATTAAATATCTCAAATTTAATTAAATAAAGATTTGAATCATATTCAAACGTATATTTCTCTCTTAACCTATAGTTTTAATATGAATCTCATTCATATTAATTTAATATTTAAATCACATTCAAATACATCAATTCTCCCATTTTATATAGTTATGTATCTACATAGATTACATCTTTGTTGGGTTTTATGTCCTAAAACTCGTACTTTGTAATTTTTGGAACTTATTCTCAATAAAGTTATTATCGAGATTTATTCAGTAAAGCTGTTATTGAATATATGAATTGCATTTATTAAATCCAATAAACTAAGAACTCCTGGTTATATACTGAATTCTTAGACTTTATGTGGTGACATAAAAATGGATCAAGTTTAGATAATAGCCAAACGGTCTATAGTATATGGATAAAGGTTGGGTACCTTATTCTAGGGAAACTATAGATGGGACCCACCTTGTATTTGATACAAACGATGTAATCCTAAATCGTTCCTGTGACAACATGTGAGTAGAGGTGTCCTATGCAATGAGTTTGAATAACACCAGACCATGAAATAATCACTTTTACTTTATTACACTATTTACTGTTAAAACTGATTATTTCAACCTGATGACCTAGGTTACTCGATCTTAATCCTGAGCTAACTATGAATTTCTATCTATTTGAGATTATCCTTTAATCTGCATAGGTGAGAGTGGCATGAGTTCTCCGACTCAATATGCCTCCCATTTTAGGGATAAGATCAAACAGATAGCTGGGGACATAATCTTGCAAGATAGAATTTACTCTTACCTATTTCTAGATTAGTAAATAAGTTGTTCCCTTAAGTACTGACTTTGGGACTTGAACAAGGTGCCCCACCCACTCATTGGCCTGAGAGGGACTAGGTTTGTTGGTTGGACCACAAACCATTGTTCATTAGAGGATTAGTGGGACTTTAGAAACGAGATGTAATTACAGGGGTAAAACAGTAATTTTGACCCAACTGTAATTACGAACAACTAGTGAAGAATTGACTTACTTATTATGGTTATATCAAGTGGATAGAAATATATCTACAGTGAGGAGAATGCAGCTACTGGGCATTAGTAGAGTGTCCCAATAATTAACGAATGTTAATTAACTAGGTTAAAGAGTTTAGCCGATTAATTTTGGATCGTTGGAGCTCATGATCTGTAGGTCCTTTAGGTCCCCTTATTAGCTCATGGACTAAACATTAGAACAGTATATTGAGTAAATTTGAAATGTTCGTATTCAGTTGAAGAGGAAAATTTATGGTTTGTTCGTTTAATTATGAAATAGACAAATTTGGAGACTTAGAAATATTTAAATGTGATTTAAATATTTTTAAGATAAATATAGGTTCACCGGATTGGATTTTGTCGGGAAAAGTGAAAAATAATTAATTTAATATTAGGGCTCTTTTCAAATATAGCAAAAGGAATCAAAATATTTACAAATATAACAAAATTTCACTATCTATTTGTGATAAACCGCGATAAACTACTATCTGTGTCATGATAGACACAGATAGTAGTCTATTACGATCTACCGTGGTCTATCGCAGATAAACTATGTATTTTGCTATTAGTTGTAAATATTTTTAGCAGTTTTGTCATTTAAGATAATTTTCCTTTAATATAATTAATTAATTATTATTTAAATTAATTATATATTAAATTAATTTTATTTAAAAATTAATTTTTGGAAATTAATTTTGAATTAAAAAAACAATTTATGAAATTGAATTTAAAAATCCAATTTGAGAAATTGGAAAAATCCACTATGCATGGTGAAGGAGGTGATGTTCTTCATGCAAGCTTCTTCCACCTCCAATTTGAGTATCTTATTCAACTGATTAGTTGTTTTCATGCATGCCAATCTAATTTTCATGCTTTCTTCTTTTAAATAGAAGAGAGGAATTGAAGAAAATGGTTAAACATTTTAGCTAATTTGTGCTGAAATTCTCTCCTACTCAAAAACTGAAAAACCAGTTTGTTGATCATCTTGTTGCTCCAAATTCTACTCAATTTGGACCCCAAAATTCGTTCTAAGGCTTTAGGATAACAAGAAAGACTCTTGTGGTAGTCCACGAAATGTTCATGATCAAAAATTCAAAGAAATTTGATTCAATTTTGAGCTACAGCAAGTAAGTGTTATTTCCATGTTTTTTGGTTTTAGAACAAGCATGTTTAATCTTCAAAATTGATGTAATTAGAGTGCTTTAAATCCTAATTCCTTCCGTTATTATGTTGCTAACTCCTTCAATTATATATTAATTGTACATGATAAAATAAATATATTCTTAATTCATTGTGAGCTAACAATGGACTTTATGGACCTACAAATTATAAGCTCAAATAATTTGAGATTAATTAATTTAACCTTCATTCATTAATTATTAGGGAAAACCATTATAGACCAAAAATTGCACTCTTATGAATTGTAGGACAAGCTATGTTCATGAATATAATCACTACATGTAAGTGAATCATTCACGAGTTGTTCGTAATTACCGCTAGTTCAAATGTCTATTTTTCTCCTTTAGTTACCTCTGTATCCTTAAGTACTACTAATCCTCTAATGAACAATTTGTTTATGGTTTAACCATAAATCAAGTCCCTCACGGGCCAATGAAAGGGTGGGCTCTATTTGTTCAAGTCCCAGAGTTAGCACTTAAAGGAACTACTCATAATATACTTACCATATATAGGAAAGAGTGAATTCCATATTGTAAAATTATGCTCCTACTAGCTCTCTATCCGATCAAGTCCCTAAAATGGCAGACTTATTGAGTTAGCATCTCGAGCCACTCTCACCCATGAAAATCAAAGGACAAGCCCTCACAGGGAAGAGTTTCACTGAGGATTAAGATCGAGTTACTTGTGATTATCTTGTGAAATATTAATCTTTTCAATTAATGGATTTACAAAGAGAGATTAATTATTTTGAGGTCTAGTCTTATAGAAAATCTTTATATAGGATACCCCACTCACATGTCTTCACATAAACAATTGGATCAAATCGTTTATAACATTTACGAAGTGGGTCGTATCCGTAGTGTCACCAGAATAAGACACCTAACATTATCCATACACTATAGACCCTTTAGGTTATTTACTTGAACATGATTCACTTATATATCAACTACATACTATTCATGTTTTCATAAAATAGCATTGAATTTTTTTTTATTGAATTAAATTATGCAACAATTAATAAAAAAAATAACAATGTATTTTTTTTTATTAATAATAAAAAATAGGTTTATTTACAAACCACGAGTTTAGGACATAACACACGAACATATGATATAATCATCACAAGGTCTTCAAACAAAGATATAGAAAAACTGATACATTCATCTTGATGCCATCTTAGATCCTTAAGATACTTTTTGGGTCTTGAGATTGCTTGTTCTAGTAAAAGCATATCTCTATCTCAAAGGAATTATACTTTACAACTCCTTGAAGATAATGGTCTTTTAGGTTGTAAACTAATTTCTTTGCCTCTTGATCCCAATCTTAAGCTGCAAATTGATGTAGGGACAGTGCGTAAAGCTGCAATTTGTTGCAAATCCCAGACAACCACATTTAGATGTTGGTTTTTGCTTGTTTAGGTACTTGAAAGCTACCCTTGCTCAAAGTATTTTTTTTGCAGTGTACAAGTTCTTTCAGTGTACAAGTTCTTTCTTGGTGATGCTCTTATTAGTTGAAAATCTAAGAAGCAGCTCTATAGAAGTCGAATACAGGACTCTAAAAACAACTACAAGTGAAATTATGTGGCTTCAGCAGTTGCTAAAGGATTTGCGTCTTAATGTTCTGTCTCCATCTTTGTTGTTTTGTGACAATGAAGTTGCTATTCACATTGCTACTAACCCCATTTTTCATGAGAGAACTAAATATATAGAGCTTGATTCTCATTTCGTTTGTGATCATGTCTCTCAAGGAACTTTTGCTTATCCGGTCTTAACTGCAGCTTACTGA ATGGCAGCGCCAGTTCGACGCTACCGTGACGCTTTTTCCCAAGAGCATCACTCCAGCTTAGCGCAGCAACACCAACGCGACGTTGTGGCACGGCACTCTCCACTTTATGGCCACTCTCTCTATGGTACCAATTATTGCTTCATTGAATTCGCTTCATTAGTAGGTTCACAATTCGACTTTGATCGTTATGGACTGGTACTAAGATCTAGTCTACCATCCTACAGCGCAGCGACACCACCTTTTGATGTCGGACAGCGCAGTGGCACCATTGACCAGTGCCGCAAAGGACAGTGCGTAAAGCTGCAATTTGTTGCAAATCCCAGACAACCACATTTAGATGTTGGTTTTTGCTTGTTTAGGTACTTGAAAGCTACCCTTGCTCAAAGTATTTTTTTTGCAGTGTACAAGTTCTTTCAGTGTACAAGTTCTTTCTTGGTGATGCTCTTATTAGTTGAAAATCTAAGAAGCAGCTCTATAGAAGTCGAATACAGGACTCTAAAAACAACTACAAGTGAAATTATGTGGCTTCAGCAGTTGCTAAAGGATTTGCGTCTTAATGTTCTGTCTCCATCTTTGTTGTTTTGTGACAATGAAGTTGCTATTCACATTGCTACTAACCCCATTTTTCATGAGAGAACTAAATATATAGAGCTTGATTCTCATTTCGTTTGTGATCATGTCTCTCAAGGAACTTTTGCTTATCCGGTCTTAACTGCAGCTTACTGA ATGGCAGCGCCAGTTCGACGCTACCGTGACGCTTTTTCCCAAGAGCATCACTCCAGCTTAGCGCAGCAACACCAACGCGACGTTGTGGCACGGCACTCTCCACTTTATGGCCACTCTCTCTATGGTACCAATTATTGCTTCATTGAATTCGCTTCATTAGTAGGTTCACAATTCGACTTTGATCGTTATGGACTGGTACTAAGATCTAGTCTACCATCCTACAGCGCAGCGACACCACCTTTTGATGTCGGACAGCGCAGTGGCACCATTGACCAGTGCCGCAAAGGACAGTGCGTAAAGCTGCAATTTGTTGCAAATCCCAGACAACCACATTTAGATGTTGGTTTTTGCTTGTTTAGGTACTTGAAAGCTACCCTTGCTCAAAGTATTTTTTTTGCAGTGTACAAGTTCTTTCAGTGTACAAGTTCTTTCTTGGTGATGCTCTTATTAGTTGAAAATCTAAGAAGCAGCTCTATAGAAGTCGAATACAGGACTCTAAAAACAACTACAAGTGAAATTATGTGGCTTCAGCAGTTGCTAAAGGATTTGCGTCTTAATGTTCTGTCTCCATCTTTGTTGTTTTGTGACAATGAAGTTGCTATTCACATTGCTACTAACCCCATTTTTCATGAGAGAACTAAATATATAGAGCTTGATTCTCATTTCGTTTGTGATCATGTCTCTCAAGGAACTTTTGCTTATCCGGTCTTAACTGCAGCTTACTGA MAAPVRRYRDAFSQEHHSSLAQQHQRDVVARHSPLYGHSLYGTNYCFIEFASLVGSQFDFDRYGLVLRSSLPSYSAATPPFDVGQRSGTIDQCRKGQCVKLQFVANPRQPHLDVGFCLFRYLKATLAQSIFFAVYKFFQCTSSFLVMLLLVENLRSSSIEVEYRTLKTTTSEIMWLQQLLKDLRLNVLSPSLLFCDNEVAIHIATNPIFHERTKYIELDSHFVCDHVSQGTFAYPVLTAAY Homology
BLAST of Clc05G14163 vs. NCBI nr
Match: XP_022867558.1 (uncharacterized protein LOC111387247 [Olea europaea var. sylvestris]) HSP 1 Score: 119.8 bits (299), Expect = 3.3e-23 Identity = 67/156 (42.95%), Postives = 89/156 (57.05%), Query Frame = 0
BLAST of Clc05G14163 vs. NCBI nr
Match: XP_022887164.1 (uncharacterized protein LOC111403045 [Olea europaea var. sylvestris]) HSP 1 Score: 114.0 bits (284), Expect = 1.8e-21 Identity = 67/156 (42.95%), Postives = 89/156 (57.05%), Query Frame = 0
BLAST of Clc05G14163 vs. NCBI nr
Match: XP_022888908.1 (uncharacterized protein LOC111404314 [Olea europaea var. sylvestris]) HSP 1 Score: 113.6 bits (283), Expect = 2.3e-21 Identity = 62/155 (40.00%), Postives = 88/155 (56.77%), Query Frame = 0
BLAST of Clc05G14163 vs. NCBI nr
Match: XP_022899321.1 (uncharacterized protein LOC111412620 [Olea europaea var. sylvestris]) HSP 1 Score: 113.2 bits (282), Expect = 3.1e-21 Identity = 64/156 (41.03%), Postives = 88/156 (56.41%), Query Frame = 0
BLAST of Clc05G14163 vs. NCBI nr
Match: XP_024026696.1 (uncharacterized protein LOC112093108 [Morus notabilis]) HSP 1 Score: 112.8 bits (281), Expect = 4.0e-21 Identity = 68/155 (43.87%), Postives = 91/155 (58.71%), Query Frame = 0
BLAST of Clc05G14163 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1) HSP 1 Score: 72.4 bits (176), Expect = 7.9e-12 Identity = 31/74 (41.89%), Postives = 48/74 (64.86%), Query Frame = 0
BLAST of Clc05G14163 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1) HSP 1 Score: 71.6 bits (174), Expect = 1.3e-11 Identity = 30/74 (40.54%), Postives = 48/74 (64.86%), Query Frame = 0
BLAST of Clc05G14163 vs. ExPASy Swiss-Prot
Match: A9LYA5 (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Acorus americanus OX=263995 GN=ndhK PE=3 SV=1) HSP 1 Score: 57.4 bits (137), Expect = 2.6e-07 Identity = 26/31 (83.87%), Postives = 29/31 (93.55%), Query Frame = 0
BLAST of Clc05G14163 vs. ExPASy Swiss-Prot
Match: Q3V530 (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Acorus calamus OX=4465 GN=ndhK PE=3 SV=2) HSP 1 Score: 57.4 bits (137), Expect = 2.6e-07 Identity = 26/31 (83.87%), Postives = 29/31 (93.55%), Query Frame = 0
BLAST of Clc05G14163 vs. ExPASy Swiss-Prot
Match: Q85FL6 (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Adiantum capillus-veneris OX=13818 GN=ndhK PE=2 SV=2) HSP 1 Score: 57.4 bits (137), Expect = 2.6e-07 Identity = 26/31 (83.87%), Postives = 29/31 (93.55%), Query Frame = 0
BLAST of Clc05G14163 vs. ExPASy TrEMBL
Match: A0A438IT12 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_3215 PE=4 SV=1) HSP 1 Score: 112.1 bits (279), Expect = 3.3e-21 Identity = 63/129 (48.84%), Postives = 78/129 (60.47%), Query Frame = 0
BLAST of Clc05G14163 vs. ExPASy TrEMBL
Match: A0A2P5FNK4 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_049120 PE=4 SV=1) HSP 1 Score: 112.1 bits (279), Expect = 3.3e-21 Identity = 71/156 (45.51%), Postives = 86/156 (55.13%), Query Frame = 0
BLAST of Clc05G14163 vs. ExPASy TrEMBL
Match: A0A803P8T3 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 109.0 bits (271), Expect = 2.8e-20 Identity = 67/156 (42.95%), Postives = 85/156 (54.49%), Query Frame = 0
BLAST of Clc05G14163 vs. ExPASy TrEMBL
Match: A0A1R3H5P4 (Integrase catalytic domain-containing protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_21443 PE=4 SV=1) HSP 1 Score: 108.2 bits (269), Expect = 4.8e-20 Identity = 63/152 (41.45%), Postives = 84/152 (55.26%), Query Frame = 0
BLAST of Clc05G14163 vs. ExPASy TrEMBL
Match: A0A2P6S8W7 (Putative RNA-directed DNA polymerase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0320771 PE=4 SV=1) HSP 1 Score: 107.5 bits (267), Expect = 8.1e-20 Identity = 64/155 (41.29%), Postives = 84/155 (54.19%), Query Frame = 0
BLAST of Clc05G14163 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 ) HSP 1 Score: 89.0 bits (219), Expect = 5.8e-18 Identity = 58/160 (36.25%), Postives = 76/160 (47.50%), Query Frame = 0
BLAST of Clc05G14163 vs. TAIR 10
Match: ATCG00430.1 (photosystem II reaction center protein G ) HSP 1 Score: 57.4 bits (137), Expect = 1.9e-08 Identity = 26/31 (83.87%), Postives = 29/31 (93.55%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
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