Clc05G14050 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc05G14050
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Unknown protein
Location	ClcChr05: 13313468 .. 13313827 (-)
RNA-Seq Expression	Clc05G14050
Synteny	Clc05G14050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCACGGGCCACACCATCAGTGGCAACCATCATTCTTCTTCTCCTCCTCCTCATTCCTACCGGCTCCACCGTCAACAACACCGCTGCCTCCGCCTCCTGCAACGGCAGCCACAGGGAGAAATGCCACCTCAGCGGAGAAGAGATCGCCAATTCCGAATTCTTGATGGAATCGGAGATCGGACGGATGCTGTTGAACTTCAATAAATTCCAAGGTCCCCAAACCCAAACCCCCAACAAACAGGCGGTGGCGTCCTGTGGCCGACCACCGCGGTACGACAGTTGTCTGGGCCAGAAGAGGCAAACGCCGCCACAGGAAAAATGCAACATCTACAAACGAGTGCCTTGTGGACAATGA

mRNA sequence

ATGGCAGCACGGGCCACACCATCAGTGGCAACCATCATTCTTCTTCTCCTCCTCCTCATTCCTACCGGCTCCACCGTCAACAACACCGCTGCCTCCGCCTCCTGCAACGGCAGCCACAGGGAGAAATGCCACCTCAGCGGAGAAGAGATCGCCAATTCCGAATTCTTGATGGAATCGGAGATCGGACGGATGCTGTTGAACTTCAATAAATTCCAAGGTCCCCAAACCCAAACCCCCAACAAACAGGCGGTGGCGTCCTGTGGCCGACCACCGCGGTACGACAGTTGTCTGGGCCAGAAGAGGCAAACGCCGCCACAGGAAAAATGCAACATCTACAAACGAGTGCCTTGTGGACAATGA

Coding sequence (CDS)

ATGGCAGCACGGGCCACACCATCAGTGGCAACCATCATTCTTCTTCTCCTCCTCCTCATTCCTACCGGCTCCACCGTCAACAACACCGCTGCCTCCGCCTCCTGCAACGGCAGCCACAGGGAGAAATGCCACCTCAGCGGAGAAGAGATCGCCAATTCCGAATTCTTGATGGAATCGGAGATCGGACGGATGCTGTTGAACTTCAATAAATTCCAAGGTCCCCAAACCCAAACCCCCAACAAACAGGCGGTGGCGTCCTGTGGCCGACCACCGCGGTACGACAGTTGTCTGGGCCAGAAGAGGCAAACGCCGCCACAGGAAAAATGCAACATCTACAAACGAGTGCCTTGTGGACAATGA

Protein sequence

MAARATPSVATIILLLLLLIPTGSTVNNTAASASCNGSHREKCHLSGEEIANSEFLMESEIGRMLLNFNKFQGPQTQTPNKQAVASCGRPPRYDSCLGQKRQTPPQEKCNIYKRVPCGQ

Homology

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BLAST of Clc05G14050 vs. NCBI nr
Match: KAA0032826.1 (hypothetical protein E6C27_scaffold708G00860 [Cucumis melo var. makuwa] >TYK30382.1 hypothetical protein E5676_scaffold575G00600 [Cucumis melo var. makuwa])

HSP 1 Score: 156.8 bits (395), Expect = 1.2e-34
Identity = 79/120 (65.83%), Postives = 97/120 (80.83%), Query Frame = 0


Query: 1   MAARATPSVATIIL-LLLLLIPTGSTVNNTAASASCNGSHREKCHLSGEEIANSE-FLME 60
           MAA +TPS+ TIIL LLL+LI +G TVN+T ASASCN SH +KCHL  +++A+ +  +ME
Sbjct: 1   MAALSTPSIGTIILFLLLILIRSGFTVNDTTASASCNNSHSKKCHLVRDDVADYKLIMME 60

Query: 61  SEIGRMLLNFNKFQGPQTQTPNKQAVASCGRPPRYDSCLGQKRQTPPQEKCNIYKRVPCG 119
            E+GRMLL+FNK+  PQT T NK +  SCGRPPRYDSCLG+KR TPPQEKC +YKRVPCG
Sbjct: 61  LEMGRMLLDFNKYTTPQTGTANKNSGGSCGRPPRYDSCLGEKRDTPPQEKCYVYKRVPCG 120

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BLAST of Clc05G14050 vs. NCBI nr
Match: KGN57776.1 (hypothetical protein Csa_010194 [Cucumis sativus])

HSP 1 Score: 136.7 bits (343), Expect = 1.3e-28
Identity = 72/116 (62.07%), Postives = 92/116 (79.31%), Query Frame = 0


Query: 1   MAARATPSVATIILLLLLLIPTGSTVNNTAASASCNGSHREKCHLSGEEIANSEFLMESE 60
           MAA +TPS+ TII LLLLLIP+G TVN+TAASASCN SH +KCHL  +++ + EF+MESE
Sbjct: 1   MAALSTPSIGTII-LLLLLIPSGFTVNDTAASASCNSSHSKKCHLVRDDVGDYEFMMESE 60

Query: 61  IGRML-LNFNKFQGPQTQTPNKQAVA-SCGRPPRYDSCLGQKRQTPPQEKCNIYKR 115
           +G ML +N++K++ P T+  NKQ V   CGRPPRY+SCLG+KR T  QEKC +YKR
Sbjct: 61  MGWMLSINYDKYKSPPTRIANKQVVKDDCGRPPRYESCLGRKRDTLIQEKCAVYKR 115

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BLAST of Clc05G14050 vs. NCBI nr
Match: KAG7011063.1 (hypothetical protein SDJN02_27861, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 97.4 bits (241), Expect = 8.6e-17
Identity = 60/119 (50.42%), Postives = 74/119 (62.18%), Query Frame = 0


Query: 2   AARATPSVATIILLLLLLIPTGS--TVNNTAASASCNGSHREKCHLSGEEIANSEFLMES 61
           A   TPS+  + ++LLL  PT S   +N TAA   C+G   E C L G+  ++SEFLME+
Sbjct: 10  ATLLTPSMTILFIILLLNPPTISHAAINKTAAE-WCDG-RLENC-LIGDLNSDSEFLMET 69

Query: 62  EIGRMLLNFNKFQGPQTQTPNKQAVASCGRPPRYDSCLGQKRQTPPQEKCNIYKRV-PC 118
           E  RMLL+FN FQ P T  P+KQ+   C RPPRYDSCLGQK   P  E C+   RV PC
Sbjct: 70  ETSRMLLDFNSFQTPNTNNPDKQSAPECNRPPRYDSCLGQKTSIPNPENCDTRNRVNPC 125

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BLAST of Clc05G14050 vs. NCBI nr
Match: KAA0042447.1 (hypothetical protein E6C27_scaffold266G00270 [Cucumis melo var. makuwa] >TYK03509.1 hypothetical protein E5676_scaffold121G001310 [Cucumis melo var. makuwa])

HSP 1 Score: 95.9 bits (237), Expect = 2.5e-16
Identity = 57/113 (50.44%), Postives = 73/113 (64.60%), Query Frame = 0


Query: 7   PSVATIILLLLL-LIPTGSTVNNTAASASCNGSHREKCHLSGEEIANSEFLMESEIGRML 66
           P++A IIL+LL   I   +TVN TA    C GS  E C L G+E ++SEFLME++  RML
Sbjct: 8   PTMAIIILILLFNTIGCNTTVNETAPE-WCYGS--ENC-LIGDESSDSEFLMETDTSRML 67

Query: 67  LNFNKFQGPQTQTPNKQAVASCGRPPRYDSCLGQKRQTPPQEKCNIYKRV-PC 118
           L+F   Q P T  PN+Q+V  CGRPPRYDSC+G+KR     E C++  R  PC
Sbjct: 68  LDFQNLQTPSTNNPNRQSVPECGRPPRYDSCIGEKRSISNPENCDVRNRENPC 116

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BLAST of Clc05G14050 vs. NCBI nr
Match: KAG6607065.1 (hypothetical protein SDJN03_00407, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 95.1 bits (235), Expect = 4.3e-16
Identity = 59/119 (49.58%), Postives = 73/119 (61.34%), Query Frame = 0


Query: 2   AARATPSVATIILLLLLLIPTGS--TVNNTAASASCNGSHREKCHLSGEEIANSEFLMES 61
           A   TPS+  + ++LLL  PT S   +N TAA   C+G   E C L G+  ++SEFLME+
Sbjct: 10  ATLLTPSMTILFIILLLNPPTISHAAINKTAAE-WCDG-RLENC-LIGDLNSDSEFLMET 69

Query: 62  EIGRMLLNFNKFQGPQTQTPNKQAVASCGRPPRYDSCLGQKRQTPPQEKCNIYKRV-PC 118
           E  RMLL+FN FQ P T  P+KQ+   C RPPRYD CLGQK   P  E C+   RV PC
Sbjct: 70  ETSRMLLDFNSFQTPNTNNPDKQSAPECNRPPRYDGCLGQKNIIPNPENCDTRNRVNPC 125

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BLAST of Clc05G14050 vs. ExPASy TrEMBL
Match: A0A5D3E3B8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold575G00600 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 5.8e-35
Identity = 79/120 (65.83%), Postives = 97/120 (80.83%), Query Frame = 0


Query: 1   MAARATPSVATIIL-LLLLLIPTGSTVNNTAASASCNGSHREKCHLSGEEIANSE-FLME 60
           MAA +TPS+ TIIL LLL+LI +G TVN+T ASASCN SH +KCHL  +++A+ +  +ME
Sbjct: 1   MAALSTPSIGTIILFLLLILIRSGFTVNDTTASASCNNSHSKKCHLVRDDVADYKLIMME 60

Query: 61  SEIGRMLLNFNKFQGPQTQTPNKQAVASCGRPPRYDSCLGQKRQTPPQEKCNIYKRVPCG 119
            E+GRMLL+FNK+  PQT T NK +  SCGRPPRYDSCLG+KR TPPQEKC +YKRVPCG
Sbjct: 61  LEMGRMLLDFNKYTTPQTGTANKNSGGSCGRPPRYDSCLGEKRDTPPQEKCYVYKRVPCG 120

[Close]

BLAST of Clc05G14050 vs. ExPASy TrEMBL
Match: A0A0A0LCI8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298050 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 6.2e-29
Identity = 72/116 (62.07%), Postives = 92/116 (79.31%), Query Frame = 0


Query: 1   MAARATPSVATIILLLLLLIPTGSTVNNTAASASCNGSHREKCHLSGEEIANSEFLMESE 60
           MAA +TPS+ TII LLLLLIP+G TVN+TAASASCN SH +KCHL  +++ + EF+MESE
Sbjct: 1   MAALSTPSIGTII-LLLLLIPSGFTVNDTAASASCNSSHSKKCHLVRDDVGDYEFMMESE 60

Query: 61  IGRML-LNFNKFQGPQTQTPNKQAVA-SCGRPPRYDSCLGQKRQTPPQEKCNIYKR 115
           +G ML +N++K++ P T+  NKQ V   CGRPPRY+SCLG+KR T  QEKC +YKR
Sbjct: 61  MGWMLSINYDKYKSPPTRIANKQVVKDDCGRPPRYESCLGRKRDTLIQEKCAVYKR 115

[Close]

BLAST of Clc05G14050 vs. ExPASy TrEMBL
Match: A0A0A0KVZ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G131140 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 5.4e-17
Identity = 56/112 (50.00%), Postives = 70/112 (62.50%), Query Frame = 0


Query: 7   PSVATIILLLLLLIPTGSTVNNTAASASCNGSHREKCHLSGEEIANSEFLMESEIGRMLL 66
           P++A +IL LL      +T  N   S  C GS  E C L G+E  +SEFLME+E  RMLL
Sbjct: 8   PTMAILILTLLFNPTRCNTTVNETTSEWCYGS--ENC-LVGDESLDSEFLMETETSRMLL 67

Query: 67  NFNKFQGPQTQTPNKQAVASCGRPPRYDSCLGQKRQTPPQEKCNIYKRV-PC 118
           +F   Q P T  PN+Q+VA CGRPPRYDSC G++RQ P  E C++  R  PC
Sbjct: 68  DFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRANPC 116

[Close]

BLAST of Clc05G14050 vs. ExPASy TrEMBL
Match: A0A5D3BZL1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold121G001310 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.2e-16
Identity = 57/113 (50.44%), Postives = 73/113 (64.60%), Query Frame = 0


Query: 7   PSVATIILLLLL-LIPTGSTVNNTAASASCNGSHREKCHLSGEEIANSEFLMESEIGRML 66
           P++A IIL+LL   I   +TVN TA    C GS  E C L G+E ++SEFLME++  RML
Sbjct: 8   PTMAIIILILLFNTIGCNTTVNETAPE-WCYGS--ENC-LIGDESSDSEFLMETDTSRML 67

Query: 67  LNFNKFQGPQTQTPNKQAVASCGRPPRYDSCLGQKRQTPPQEKCNIYKRV-PC 118
           L+F   Q P T  PN+Q+V  CGRPPRYDSC+G+KR     E C++  R  PC
Sbjct: 68  LDFQNLQTPSTNNPNRQSVPECGRPPRYDSCIGEKRSISNPENCDVRNRENPC 116

[Close]

BLAST of Clc05G14050 vs. ExPASy TrEMBL
Match: A0A5D3BS53 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G002320 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.4e-12
Identity = 50/119 (42.02%), Postives = 63/119 (52.94%), Query Frame = 0


Query: 1   MAARATPSVATIILLLLLL-IPTGSTVNNTAASASCNGSHREKCHLSGEEIANSEFLMES 60
           M A AT   A ++ ++LLL IP+      T      N +   +  + GEE  + EF+MES
Sbjct: 1   MGASATMIPAAVVTMILLLNIPSSCEALTTFEPLLSNHTSYGEQLMVGEEDMDMEFIMES 60

Query: 61  EIGRMLLNFNKFQGPQTQTPNKQAVASCGRPPRYDSCLGQKRQTPPQEKCNIYKRV-PC 118
            I R+L +   FQ   T   NK +   CGRPPRYDSCLGQKR  PP   C  Y R  PC
Sbjct: 61  HISRILASSQNFQTTSTVDANKASGGGCGRPPRYDSCLGQKRNNPPPPNCGTYNRANPC 119

The following BLAST results are available for this feature:

BLAST of Clc05G14050 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0032826.1	1.2e-34	65.83	hypothetical protein E6C27_scaffold708G00860 [Cucumis melo var. makuwa] >TYK3038...	[more]
KGN57776.1	1.3e-28	62.07	hypothetical protein Csa_010194 [Cucumis sativus]	[more]
KAG7011063.1	8.6e-17	50.42	hypothetical protein SDJN02_27861, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAA0042447.1	2.5e-16	50.44	hypothetical protein E6C27_scaffold266G00270 [Cucumis melo var. makuwa] >TYK0350...	[more]
KAG6607065.1	4.3e-16	49.58	hypothetical protein SDJN03_00407, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Clc05G14050 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc05G14050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E3B8	5.8e-35	65.83	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LCI8	6.2e-29	62.07	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298050 PE=4 SV=1	[more]
A0A0A0KVZ2	5.4e-17	50.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G131140 PE=4 SV=1	[more]
A0A5D3BZL1	1.2e-16	50.44	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BS53	1.4e-12	42.02	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Clc05G14050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..35 score: 5.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc05G14050.1	Clc05G14050.1	mRNA