Clc05G13400 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc05G13400
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Gag/pol protein
Location	ClcChr05: 11785229 .. 11786017 (+)
RNA-Seq Expression	Clc05G13400
Synteny	Clc05G13400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGATTTGGGAGACCAGTATGTTCTTGGAATCCAAATAGTTCGGAATCGCAAGAACAAGATGTTAGCTATGTCTCAGGCATCATATATTGACAAAATGTTCTCTAGATATAAGATGCAAAATTCCAAGAGAGGTCTATTACCGTTCAGGCATGAAATTCATTTGTCAAAGGAACAATGTCCTAAGACACCTCAAGAAGTTGAGGATATGAGACGCATTTCTTATGCTTTAGCAGTCGGAAGTCTGATGTATGCTATGTTGTGTACACGATCTAACATATGCTATGTAGTAGGAATAGTCAGCAGCTATGAGTCCAATCCAGAATATGATCATTGGACTACCATTAAAAATATCCTCAAGTATCTAAGGAGAACGAGGGACTATGCTCGTGTATGGCGCTTAAATCTGATCCTTATAGGATACACTAACTCTGATTTTCAGACCGATATAGATTCAAGGAAATCAACATCGAGATCAGTGTTAATTCTAAATGAAGGAGCAATAGTTTGGAAGAGTACCAAACAAGGCTGTATAGCTGACTCCACCATGGAAGCTGAGTATGTAGCTGCATGTGAAGCAGCAAAAGAAGTAGTATGGCTTAAAAAGTTCTTAGCGCATTTGGAAATTGTTCTAAATATGCATCTGCCTATCACTCTCTATTGTGATAATAGTGGTGCAGTTGCAAATTCTAAAGAACTCAGAAGCCATAAGCGGGGCAAACACATTGAACACAAATATCAGCTCATCAGGGAGATTGTGCAAAGAGGAGACGTAATGGCCAAGTAG

mRNA sequence

ATGAAAGATTTGGGAGACCAGTATGTTCTTGGAATCCAAATAGTTCGGAATCGCAAGAACAAGATGTTAGCTATGTCTCAGGCATCATATATTGACAAAATGTTCTCTAGATATAAGATGCAAAATTCCAAGAGAGGTCTATTACCGTTCAGGCATGAAATTCATTTGTCAAAGGAACAATGTCCTAAGACACCTCAAGAAGTTGAGGATATGAGACGCATTTCTTATGCTTTAGCAGTCGGAAGTCTGATGTATGCTATGTTGTGTACACGATCTAACATATGCTATGTAGTAGGAATAGTCAGCAGCTATGAGTCCAATCCAGAATATGATCATTGGACTACCATTAAAAATATCCTCAAGTATCTAAGGAGAACGAGGGACTATGCTCGTGTATGGCGCTTAAATCTGATCCTTATAGGATACACTAACTCTGATTTTCAGACCGATATAGATTCAAGGAAATCAACATCGAGATCAGTGTTAATTCTAAATGAAGGAGCAATAGTTTGGAAGAGTACCAAACAAGGCTGTATAGCTGACTCCACCATGGAAGCTGAGTATGTAGCTGCATGTGAAGCAGCAAAAGAAGTAGTATGGCTTAAAAAGTTCTTAGCGCATTTGGAAATTGTTCTAAATATGCATCTGCCTATCACTCTCTATTGTGATAATAGTGGTGCAGTTGCAAATTCTAAAGAACTCAGAAGCCATAAGCGGGGCAAACACATTGAACACAAATATCAGCTCATCAGGGAGATTGTGCAAAGAGGAGACGTAATGGCCAAGTAG

Coding sequence (CDS)

ATGAAAGATTTGGGAGACCAGTATGTTCTTGGAATCCAAATAGTTCGGAATCGCAAGAACAAGATGTTAGCTATGTCTCAGGCATCATATATTGACAAAATGTTCTCTAGATATAAGATGCAAAATTCCAAGAGAGGTCTATTACCGTTCAGGCATGAAATTCATTTGTCAAAGGAACAATGTCCTAAGACACCTCAAGAAGTTGAGGATATGAGACGCATTTCTTATGCTTTAGCAGTCGGAAGTCTGATGTATGCTATGTTGTGTACACGATCTAACATATGCTATGTAGTAGGAATAGTCAGCAGCTATGAGTCCAATCCAGAATATGATCATTGGACTACCATTAAAAATATCCTCAAGTATCTAAGGAGAACGAGGGACTATGCTCGTGTATGGCGCTTAAATCTGATCCTTATAGGATACACTAACTCTGATTTTCAGACCGATATAGATTCAAGGAAATCAACATCGAGATCAGTGTTAATTCTAAATGAAGGAGCAATAGTTTGGAAGAGTACCAAACAAGGCTGTATAGCTGACTCCACCATGGAAGCTGAGTATGTAGCTGCATGTGAAGCAGCAAAAGAAGTAGTATGGCTTAAAAAGTTCTTAGCGCATTTGGAAATTGTTCTAAATATGCATCTGCCTATCACTCTCTATTGTGATAATAGTGGTGCAGTTGCAAATTCTAAAGAACTCAGAAGCCATAAGCGGGGCAAACACATTGAACACAAATATCAGCTCATCAGGGAGATTGTGCAAAGAGGAGACGTAATGGCCAAGTAG

Protein sequence

MKDLGDQYVLGIQIVRNRKNKMLAMSQASYIDKMFSRYKMQNSKRGLLPFRHEIHLSKEQCPKTPQEVEDMRRISYALAVGSLMYAMLCTRSNICYVVGIVSSYESNPEYDHWTTIKNILKYLRRTRDYARVWRLNLILIGYTNSDFQTDIDSRKSTSRSVLILNEGAIVWKSTKQGCIADSTMEAEYVAACEAAKEVVWLKKFLAHLEIVLNMHLPITLYCDNSGAVANSKELRSHKRGKHIEHKYQLIREIVQRGDVMAK

Homology

[Close]

BLAST of Clc05G13400 vs. NCBI nr
Match: KAA0035907.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 411.4 bits (1056), Expect = 5.9e-111
Identity = 210/262 (80.15%), Postives = 228/262 (87.02%), Query Frame = 0


Query: 1    MKDLGD-QYVLGIQIVRNRKNKMLAMSQASYIDKMFSRYKMQNSKRGLLPFRHEIHLSKE 60
            MKDLG+ QYVLGIQI+R+RKNK LA+SQA+YIDK+  RY MQNSK+GLLPFRH +HLSKE
Sbjct: 936  MKDLGEGQYVLGIQIIRDRKNKTLALSQATYIDKLLVRYSMQNSKKGLLPFRHGVHLSKE 995

Query: 61   QCPKTPQEVEDMRRISYALAVGSLMYAMLCTRSNICYVVGIVSSYESNPEYDHWTTIKNI 120
            Q PKTPQEVEDMRRI YA AVGSLMYAMLCTR +ICY VGIVS Y+SNP  DHWT +K I
Sbjct: 996  QSPKTPQEVEDMRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTAVKII 1055

Query: 121  LKYLRRTRDYARVW-RLNLILIGYTNSDFQTDIDSRKSTSRSVLILNEGAIVWKSTKQGC 180
            LKYLRRTRDY  V+   +LIL GYTNSDFQTD DSRKSTSRSV  LN GA+VW+S KQGC
Sbjct: 1056 LKYLRRTRDYMLVYGAKDLILTGYTNSDFQTDKDSRKSTSRSVFTLNGGAVVWRSIKQGC 1115

Query: 181  IADSTMEAEYVAACEAAKEVVWLKKFLAHLEIVLNMHLPITLYCDNSGAVANSKELRSHK 240
            IADSTMEAEYVAACEAAKE VWLKKFL  LE+V NM+LPITLYCDNSGAVANSKE RSHK
Sbjct: 1116 IADSTMEAEYVAACEAAKEAVWLKKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHK 1175

Query: 241  RGKHIEHKYQLIREIVQRGDVM 261
            RGKHIE KY LIREIVQRGDV+
Sbjct: 1176 RGKHIERKYHLIREIVQRGDVI 1197

[Close]

BLAST of Clc05G13400 vs. NCBI nr
Match: KAA0061170.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 410.2 bits (1053), Expect = 1.3e-110
Identity = 209/262 (79.77%), Postives = 229/262 (87.40%), Query Frame = 0


Query: 1   MKDLGD-QYVLGIQIVRNRKNKMLAMSQASYIDKMFSRYKMQNSKRGLLPFRHEIHLSKE 60
           MKDLG+ QYVLGIQI+R+RKNK LA+SQA+YIDK+  RY MQNSK+GLLPFRH +HLSKE
Sbjct: 97  MKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKLLVRYSMQNSKKGLLPFRHGVHLSKE 156

Query: 61  QCPKTPQEVEDMRRISYALAVGSLMYAMLCTRSNICYVVGIVSSYESNPEYDHWTTIKNI 120
           Q PKTPQEVEDMRRI YA AVGSLMYAMLCTR +ICY VGIVS Y+SNP  DHWTT+K I
Sbjct: 157 QSPKTPQEVEDMRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTTVKII 216

Query: 121 LKYLRRTRDYARVW-RLNLILIGYTNSDFQTDIDSRKSTSRSVLILNEGAIVWKSTKQGC 180
           LKYLRRTRDY  V+   +LIL GYT+SDFQTD DSRKSTS SV  LNEGA+VW+S KQGC
Sbjct: 217 LKYLRRTRDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNEGAVVWRSIKQGC 276

Query: 181 IADSTMEAEYVAACEAAKEVVWLKKFLAHLEIVLNMHLPITLYCDNSGAVANSKELRSHK 240
           IADSTMEAEYVAACEAAKE VWL+KFL  LE+V NM+LPITLYCDNSGAVANSKE RSHK
Sbjct: 277 IADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHK 336

Query: 241 RGKHIEHKYQLIREIVQRGDVM 261
           RGKHIE KY LIREIVQRGDV+
Sbjct: 337 RGKHIERKYHLIREIVQRGDVI 358

[Close]

BLAST of Clc05G13400 vs. NCBI nr
Match: ADJ18449.1 (gag/pol protein, partial [Bryonia dioica])

HSP 1 Score: 409.1 bits (1050), Expect = 2.9e-110
Identity = 208/262 (79.39%), Postives = 227/262 (86.64%), Query Frame = 0


Query: 1    MKDLGD-QYVLGIQIVRNRKNKMLAMSQASYIDKMFSRYKMQNSKRGLLPFRHEIHLSKE 60
            MKDLG+ QY+LGIQIVRNRKNK LAMSQASYIDK+ SRYKMQNSK+G LPFRH IHLSKE
Sbjct: 1028 MKDLGEAQYILGIQIVRNRKNKTLAMSQASYIDKVLSRYKMQNSKKGQLPFRHGIHLSKE 1087

Query: 61   QCPKTPQEVEDMRRISYALAVGSLMYAMLCTRSNICYVVGIVSSYESNPEYDHWTTIKNI 120
            QCPKTPQEVEDMR I Y+ AVGSLMYAMLCTR +ICY VGIVS Y+SNP  DHWT +KNI
Sbjct: 1088 QCPKTPQEVEDMRNIPYSSAVGSLMYAMLCTRPDICYSVGIVSRYQSNPGRDHWTAVKNI 1147

Query: 121  LKYLRRTRDYARVW-RLNLILIGYTNSDFQTDIDSRKSTSRSVLILNEGAIVWKSTKQGC 180
            LKYLRRTR+Y  V+   +LIL GYT+SDFQ+D D+RKSTS SV  LN GA+VW+S KQ C
Sbjct: 1148 LKYLRRTRNYMLVYGAKDLILTGYTDSDFQSDKDARKSTSGSVFTLNGGAVVWRSVKQTC 1207

Query: 181  IADSTMEAEYVAACEAAKEVVWLKKFLAHLEIVLNMHLPITLYCDNSGAVANSKELRSHK 240
            IADSTMEAEYVAACEAAKE VWL+KFL  LE+V NMHLPITLYCDNSGAVANSKE RSHK
Sbjct: 1208 IADSTMEAEYVAACEAAKEAVWLRKFLTDLEVVPNMHLPITLYCDNSGAVANSKEPRSHK 1267

Query: 241  RGKHIEHKYQLIREIVQRGDVM 261
            RGKHIE KY LIREIV RGDV+
Sbjct: 1268 RGKHIERKYHLIREIVHRGDVV 1289

[Close]

BLAST of Clc05G13400 vs. NCBI nr
Match: KAA0025945.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0035786.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0040492.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0041262.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 405.2 bits (1040), Expect = 4.2e-109
Identity = 206/262 (78.63%), Postives = 227/262 (86.64%), Query Frame = 0


Query: 1    MKDLGD-QYVLGIQIVRNRKNKMLAMSQASYIDKMFSRYKMQNSKRGLLPFRHEIHLSKE 60
            MKDLG+ QYVLGIQI+R+RKNK LA+SQA+YIDK+  RY MQNSK+GLLPFRH +HLSKE
Sbjct: 936  MKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKLLVRYSMQNSKKGLLPFRHGVHLSKE 995

Query: 61   QCPKTPQEVEDMRRISYALAVGSLMYAMLCTRSNICYVVGIVSSYESNPEYDHWTTIKNI 120
            Q PKTPQEVEDMRRI YA AVGSLMYAMLCTR +ICY VGIVS Y+SNP  DHWT +K +
Sbjct: 996  QSPKTPQEVEDMRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTAVKIV 1055

Query: 121  LKYLRRTRDYARVW-RLNLILIGYTNSDFQTDIDSRKSTSRSVLILNEGAIVWKSTKQGC 180
            LKYLRRTRDY  V+   +LIL GYT+SDFQTD DSRKSTS SV  LN GA+VW+S KQGC
Sbjct: 1056 LKYLRRTRDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGC 1115

Query: 181  IADSTMEAEYVAACEAAKEVVWLKKFLAHLEIVLNMHLPITLYCDNSGAVANSKELRSHK 240
            IADSTMEAEYVAACEAAKE VWL+KFL  LE+V NM+LPITLYCDNSGAVANSKE RSHK
Sbjct: 1116 IADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHK 1175

Query: 241  RGKHIEHKYQLIREIVQRGDVM 261
            RGKHIE KY LIREIVQRGDV+
Sbjct: 1176 RGKHIERKYHLIREIVQRGDVI 1197

[Close]

BLAST of Clc05G13400 vs. NCBI nr
Match: KAA0059226.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 405.2 bits (1040), Expect = 4.2e-109
Identity = 206/262 (78.63%), Postives = 227/262 (86.64%), Query Frame = 0


Query: 1    MKDLGD-QYVLGIQIVRNRKNKMLAMSQASYIDKMFSRYKMQNSKRGLLPFRHEIHLSKE 60
            MKDLG+ QYVLGIQI+R+RKNK LA+SQA+YIDK+  RY MQNSK+GLLPFRH +HLSKE
Sbjct: 810  MKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKLLVRYSMQNSKKGLLPFRHGVHLSKE 869

Query: 61   QCPKTPQEVEDMRRISYALAVGSLMYAMLCTRSNICYVVGIVSSYESNPEYDHWTTIKNI 120
            Q PKTPQEVEDMRRI YA AVGSLMYAMLCTR +ICY VGIVS Y+SNP  DHWT +K +
Sbjct: 870  QSPKTPQEVEDMRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTAVKIV 929

Query: 121  LKYLRRTRDYARVW-RLNLILIGYTNSDFQTDIDSRKSTSRSVLILNEGAIVWKSTKQGC 180
            LKYLRRTRDY  V+   +LIL GYT+SDFQTD DSRKSTS SV  LN GA+VW+S KQGC
Sbjct: 930  LKYLRRTRDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGC 989

Query: 181  IADSTMEAEYVAACEAAKEVVWLKKFLAHLEIVLNMHLPITLYCDNSGAVANSKELRSHK 240
            IADSTMEAEYVAACEAAKE VWL+KFL  LE+V NM+LPITLYCDNSGAVANSKE RSHK
Sbjct: 990  IADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHK 1049

Query: 241  RGKHIEHKYQLIREIVQRGDVM 261
            RGKHIE KY LIREIVQRGDV+
Sbjct: 1050 RGKHIERKYHLIREIVQRGDVI 1071

[Close]

BLAST of Clc05G13400 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 6.5e-52
Identity = 113/256 (44.14%), Postives = 163/256 (63.67%), Query Frame = 0


Query: 1    MKDLGD-QYVLGIQIVRNRKNKMLAMSQASYIDKMFSRYKMQNSKRGLLPFRHEIHLSKE 60
            MKDLG  Q +LG++IVR R ++ L +SQ  YI+++  R+ M+N+K    P    + LSK+
Sbjct: 1035 MKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKK 1094

Query: 61   QCPKTPQEVEDMRRISYALAVGSLMYAMLCTRSNICYVVGIVSSYESNPEYDHWTTIKNI 120
             CP T +E  +M ++ Y+ AVGSLMYAM+CTR +I + VG+VS +  NP  +HW  +K I
Sbjct: 1095 MCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWI 1154

Query: 121  LKYLR-RTRDYARVWRLNLILIGYTNSDFQTDIDSRKSTSRSVLILNEGAIVWKSTKQGC 180
            L+YLR  T D       + IL GYT++D   DID+RKS++  +   + GAI W+S  Q C
Sbjct: 1155 LRYLRGTTGDCLCFGGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKC 1214

Query: 181  IADSTMEAEYVAACEAAKEVVWLKKFLAHLEIVLNMHLPITLYCDNSGAVANSKELRSHK 240
            +A ST EAEY+AA E  KE++WLK+FL  L +    ++   +YCD+  A+  SK    H 
Sbjct: 1215 VALSTTEAEYIAATETGKEMIWLKRFLQELGLHQKEYV---VYCDSQSAIDLSKNSMYHA 1274

Query: 241  RGKHIEHKYQLIREIV 255
            R KHI+ +Y  IRE+V
Sbjct: 1275 RTKHIDVRYHWIREMV 1287

[Close]

BLAST of Clc05G13400 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 132.9 bits (333), Expect = 5.3e-30
Identity = 88/265 (33.21%), Postives = 139/265 (52.45%), Query Frame = 0


Query: 1    MKDLGD-QYVLGIQIVRNRKNKMLAMSQASYIDKMFSRYKMQNSKRGLLP----FRHEIH 60
            M DL + ++ +GI+I    +   + +SQ++Y+ K+ S++ M+N      P      +E+ 
Sbjct: 1114 MTDLNEIKHFIGIRI--EMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPSKINYELL 1173

Query: 61   LSKEQCPKTPQEVEDMRRISYALAVGSLMYAMLCTRSNICYVVGIVSSYESNPEYDHWTT 120
             S E C  TP              +G LMY MLCTR ++   V I+S Y S    + W  
Sbjct: 1174 NSDEDC-NTP----------CRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQN 1233

Query: 121  IKNILKYLRRTRDYARVWRLNLI----LIGYTNSDFQ-TDIDSRKSTSRSVLILNEGAIV 180
            +K +L+YL+ T D   +++ NL     +IGY +SD+  ++ID + +T     + +   I 
Sbjct: 1234 LKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLIC 1293

Query: 181  WKSTKQGCIADSTMEAEYVAACEAAKEVVWLKKFLAHLEIVLNMHLPITLYCDNSGAVAN 240
            W + +Q  +A S+ EAEY+A  EA +E +WLK  L  + I L    PI +Y DN G ++ 
Sbjct: 1294 WNTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINIKLEN--PIKIYEDNQGCISI 1353

Query: 241  SKELRSHKRGKHIEHKYQLIREIVQ 256
            +     HKR KHI+ KY   RE VQ
Sbjct: 1354 ANNPSCHKRAKHIDIKYHFAREQVQ 1363

[Close]

BLAST of Clc05G13400 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.1e-22
Identity = 83/252 (32.94%), Postives = 115/252 (45.63%), Query Frame = 0


Query: 8    YVLGIQIVRNRKNKMLAMSQASYIDKMFSRYKMQNSKRGLLPFRHEIHLSKEQCPKTPQE 67
            Y LGI+    R  + L +SQ  Y   + +R  M  +K    P      L+     K P  
Sbjct: 1168 YFLGIE--AKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTKLPDP 1227

Query: 68   VEDMRRISYALAVGSLMYAMLCTRSNICYVVGIVSSYESNPEYDHWTTIKNILKYLRRTR 127
             E      Y   VGSL Y +  TR ++ Y V  +S Y   P  DHW  +K +L+YL  T 
Sbjct: 1228 TE------YRGIVGSLQY-LAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTP 1287

Query: 128  DYARVWRL--NLILIGYTNSDFQTDIDSRKSTSRSVLILNEGAIVWKSTKQGCIADSTME 187
            D+    +    L L  Y+++D+  D D   ST+  ++ L    I W S KQ  +  S+ E
Sbjct: 1288 DHGIFLKKGNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTE 1347

Query: 188  AEYVAACEAAKEVVWLKKFLAHLEIVLNMHLPITLYCDNSGAVANSKELRSHKRGKHIEH 247
            AEY +    + E+ W+   L  L I L+ H P+ +YCDN GA         H R KHI  
Sbjct: 1348 AEYRSVANTSSELQWICSLLTELGIQLS-HPPV-IYCDNVGATYLCANPVFHSRMKHIAL 1407

Query: 248  KYQLIREIVQRG 258
             Y  IR  VQ G
Sbjct: 1408 DYHFIRNQVQSG 1408

[Close]

BLAST of Clc05G13400 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.2e-21
Identity = 52/133 (39.10%), Postives = 84/133 (63.16%), Query Frame = 0


Query: 71  MRRISYALAVGSLMYAMLCTRSNICYVVGIVSSYESNPEYDHWTTIKNILKYLRRTRDYA 130
           M+ + Y  AVG++MY M+ TR ++   VG++S + S+P   HW  +K +L+YL+ T+ Y 
Sbjct: 1   MKNVPYLSAVGAIMYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYG 60

Query: 131 RVWRL--NLILIGYTNSDFQTDIDSRKSTSRSVLILNEGAIVWKSTKQGCIADSTMEAEY 190
             +       L+GY+++D+  D++SR+STS  +  LN G + W+S KQ  +A S+ E EY
Sbjct: 61  LEFTRAGTAKLVGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEY 120

Query: 191 VAACEAAKEVVWL 202
           +A  EA +E VWL
Sbjct: 121 MALSEATQEAVWL 133

[Close]

BLAST of Clc05G13400 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.1e-18
Identity = 81/252 (32.14%), Postives = 110/252 (43.65%), Query Frame = 0


Query: 8    YVLGIQIVRNRKNKMLAMSQASYIDKMFSRYKMQNSKRGLLPFRHEIHLSKEQCPKTPQE 67
            Y LGI+    R    L +SQ  YI  + +R  M  +K    P      LS     K    
Sbjct: 1185 YFLGIE--AKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKLTDP 1244

Query: 68   VEDMRRISYALAVGSLMYAMLCTRSNICYVVGIVSSYESNPEYDHWTTIKNILKYLRRTR 127
             E      Y   VGSL Y +  TR +I Y V  +S +   P  +H   +K IL+YL  T 
Sbjct: 1245 TE------YRGIVGSLQY-LAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTP 1304

Query: 128  DYARVWRL--NLILIGYTNSDFQTDIDSRKSTSRSVLILNEGAIVWKSTKQGCIADSTME 187
            ++    +    L L  Y+++D+  D D   ST+  ++ L    I W S KQ  +  S+ E
Sbjct: 1305 NHGIFLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTE 1364

Query: 188  AEYVAACEAAKEVVWLKKFLAHLEIVLNMHLPITLYCDNSGAVANSKELRSHKRGKHIEH 247
            AEY +    + E+ W+   L  L I L    P  +YCDN GA         H R KHI  
Sbjct: 1365 AEYRSVANTSSEMQWICSLLTELGIRLTR--PPVIYCDNVGATYLCANPVFHSRMKHIAI 1424

Query: 248  KYQLIREIVQRG 258
             Y  IR  VQ G
Sbjct: 1425 DYHFIRNQVQSG 1425

[Close]

BLAST of Clc05G13400 vs. ExPASy TrEMBL
Match: A0A5A7T2V9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00760 PE=4 SV=1)

HSP 1 Score: 411.4 bits (1056), Expect = 2.9e-111
Identity = 210/262 (80.15%), Postives = 228/262 (87.02%), Query Frame = 0


Query: 1    MKDLGD-QYVLGIQIVRNRKNKMLAMSQASYIDKMFSRYKMQNSKRGLLPFRHEIHLSKE 60
            MKDLG+ QYVLGIQI+R+RKNK LA+SQA+YIDK+  RY MQNSK+GLLPFRH +HLSKE
Sbjct: 936  MKDLGEGQYVLGIQIIRDRKNKTLALSQATYIDKLLVRYSMQNSKKGLLPFRHGVHLSKE 995

Query: 61   QCPKTPQEVEDMRRISYALAVGSLMYAMLCTRSNICYVVGIVSSYESNPEYDHWTTIKNI 120
            Q PKTPQEVEDMRRI YA AVGSLMYAMLCTR +ICY VGIVS Y+SNP  DHWT +K I
Sbjct: 996  QSPKTPQEVEDMRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTAVKII 1055

Query: 121  LKYLRRTRDYARVW-RLNLILIGYTNSDFQTDIDSRKSTSRSVLILNEGAIVWKSTKQGC 180
            LKYLRRTRDY  V+   +LIL GYTNSDFQTD DSRKSTSRSV  LN GA+VW+S KQGC
Sbjct: 1056 LKYLRRTRDYMLVYGAKDLILTGYTNSDFQTDKDSRKSTSRSVFTLNGGAVVWRSIKQGC 1115

Query: 181  IADSTMEAEYVAACEAAKEVVWLKKFLAHLEIVLNMHLPITLYCDNSGAVANSKELRSHK 240
            IADSTMEAEYVAACEAAKE VWLKKFL  LE+V NM+LPITLYCDNSGAVANSKE RSHK
Sbjct: 1116 IADSTMEAEYVAACEAAKEAVWLKKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHK 1175

Query: 241  RGKHIEHKYQLIREIVQRGDVM 261
            RGKHIE KY LIREIVQRGDV+
Sbjct: 1176 RGKHIERKYHLIREIVQRGDVI 1197

[Close]

BLAST of Clc05G13400 vs. ExPASy TrEMBL
Match: A0A5A7V1F5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold753G00440 PE=4 SV=1)

HSP 1 Score: 410.2 bits (1053), Expect = 6.4e-111
Identity = 209/262 (79.77%), Postives = 229/262 (87.40%), Query Frame = 0


Query: 1   MKDLGD-QYVLGIQIVRNRKNKMLAMSQASYIDKMFSRYKMQNSKRGLLPFRHEIHLSKE 60
           MKDLG+ QYVLGIQI+R+RKNK LA+SQA+YIDK+  RY MQNSK+GLLPFRH +HLSKE
Sbjct: 97  MKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKLLVRYSMQNSKKGLLPFRHGVHLSKE 156

Query: 61  QCPKTPQEVEDMRRISYALAVGSLMYAMLCTRSNICYVVGIVSSYESNPEYDHWTTIKNI 120
           Q PKTPQEVEDMRRI YA AVGSLMYAMLCTR +ICY VGIVS Y+SNP  DHWTT+K I
Sbjct: 157 QSPKTPQEVEDMRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTTVKII 216

Query: 121 LKYLRRTRDYARVW-RLNLILIGYTNSDFQTDIDSRKSTSRSVLILNEGAIVWKSTKQGC 180
           LKYLRRTRDY  V+   +LIL GYT+SDFQTD DSRKSTS SV  LNEGA+VW+S KQGC
Sbjct: 217 LKYLRRTRDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNEGAVVWRSIKQGC 276

Query: 181 IADSTMEAEYVAACEAAKEVVWLKKFLAHLEIVLNMHLPITLYCDNSGAVANSKELRSHK 240
           IADSTMEAEYVAACEAAKE VWL+KFL  LE+V NM+LPITLYCDNSGAVANSKE RSHK
Sbjct: 277 IADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHK 336

Query: 241 RGKHIEHKYQLIREIVQRGDVM 261
           RGKHIE KY LIREIVQRGDV+
Sbjct: 337 RGKHIERKYHLIREIVQRGDVI 358

[Close]

BLAST of Clc05G13400 vs. ExPASy TrEMBL
Match: E2GK51 (Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1)

HSP 1 Score: 409.1 bits (1050), Expect = 1.4e-110
Identity = 208/262 (79.39%), Postives = 227/262 (86.64%), Query Frame = 0


Query: 1    MKDLGD-QYVLGIQIVRNRKNKMLAMSQASYIDKMFSRYKMQNSKRGLLPFRHEIHLSKE 60
            MKDLG+ QY+LGIQIVRNRKNK LAMSQASYIDK+ SRYKMQNSK+G LPFRH IHLSKE
Sbjct: 1028 MKDLGEAQYILGIQIVRNRKNKTLAMSQASYIDKVLSRYKMQNSKKGQLPFRHGIHLSKE 1087

Query: 61   QCPKTPQEVEDMRRISYALAVGSLMYAMLCTRSNICYVVGIVSSYESNPEYDHWTTIKNI 120
            QCPKTPQEVEDMR I Y+ AVGSLMYAMLCTR +ICY VGIVS Y+SNP  DHWT +KNI
Sbjct: 1088 QCPKTPQEVEDMRNIPYSSAVGSLMYAMLCTRPDICYSVGIVSRYQSNPGRDHWTAVKNI 1147

Query: 121  LKYLRRTRDYARVW-RLNLILIGYTNSDFQTDIDSRKSTSRSVLILNEGAIVWKSTKQGC 180
            LKYLRRTR+Y  V+   +LIL GYT+SDFQ+D D+RKSTS SV  LN GA+VW+S KQ C
Sbjct: 1148 LKYLRRTRNYMLVYGAKDLILTGYTDSDFQSDKDARKSTSGSVFTLNGGAVVWRSVKQTC 1207

Query: 181  IADSTMEAEYVAACEAAKEVVWLKKFLAHLEIVLNMHLPITLYCDNSGAVANSKELRSHK 240
            IADSTMEAEYVAACEAAKE VWL+KFL  LE+V NMHLPITLYCDNSGAVANSKE RSHK
Sbjct: 1208 IADSTMEAEYVAACEAAKEAVWLRKFLTDLEVVPNMHLPITLYCDNSGAVANSKEPRSHK 1267

Query: 241  RGKHIEHKYQLIREIVQRGDVM 261
            RGKHIE KY LIREIV RGDV+
Sbjct: 1268 RGKHIERKYHLIREIVHRGDVV 1289

[Close]

BLAST of Clc05G13400 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 405.2 bits (1040), Expect = 2.1e-109
Identity = 206/262 (78.63%), Postives = 227/262 (86.64%), Query Frame = 0


Query: 1    MKDLGD-QYVLGIQIVRNRKNKMLAMSQASYIDKMFSRYKMQNSKRGLLPFRHEIHLSKE 60
            MKDLG+ QYVLGIQI+R+RKNK LA+SQA+YIDK+  RY MQNSK+GLLPFRH +HLSKE
Sbjct: 936  MKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKLLVRYSMQNSKKGLLPFRHGVHLSKE 995

Query: 61   QCPKTPQEVEDMRRISYALAVGSLMYAMLCTRSNICYVVGIVSSYESNPEYDHWTTIKNI 120
            Q PKTPQEVEDMRRI YA AVGSLMYAMLCTR +ICY VGIVS Y+SNP  DHWT +K +
Sbjct: 996  QSPKTPQEVEDMRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTAVKIV 1055

Query: 121  LKYLRRTRDYARVW-RLNLILIGYTNSDFQTDIDSRKSTSRSVLILNEGAIVWKSTKQGC 180
            LKYLRRTRDY  V+   +LIL GYT+SDFQTD DSRKSTS SV  LN GA+VW+S KQGC
Sbjct: 1056 LKYLRRTRDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGC 1115

Query: 181  IADSTMEAEYVAACEAAKEVVWLKKFLAHLEIVLNMHLPITLYCDNSGAVANSKELRSHK 240
            IADSTMEAEYVAACEAAKE VWL+KFL  LE+V NM+LPITLYCDNSGAVANSKE RSHK
Sbjct: 1116 IADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHK 1175

Query: 241  RGKHIEHKYQLIREIVQRGDVM 261
            RGKHIE KY LIREIVQRGDV+
Sbjct: 1176 RGKHIERKYHLIREIVQRGDVI 1197

[Close]

BLAST of Clc05G13400 vs. ExPASy TrEMBL
Match: A0A5A7UYE8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G001570 PE=4 SV=1)

HSP 1 Score: 405.2 bits (1040), Expect = 2.1e-109
Identity = 206/262 (78.63%), Postives = 227/262 (86.64%), Query Frame = 0


Query: 1    MKDLGD-QYVLGIQIVRNRKNKMLAMSQASYIDKMFSRYKMQNSKRGLLPFRHEIHLSKE 60
            MKDLG+ QYVLGIQI+R+RKNK LA+SQA+YIDK+  RY MQNSK+GLLPFRH +HLSKE
Sbjct: 810  MKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKLLVRYSMQNSKKGLLPFRHGVHLSKE 869

Query: 61   QCPKTPQEVEDMRRISYALAVGSLMYAMLCTRSNICYVVGIVSSYESNPEYDHWTTIKNI 120
            Q PKTPQEVEDMRRI YA AVGSLMYAMLCTR +ICY VGIVS Y+SNP  DHWT +K +
Sbjct: 870  QSPKTPQEVEDMRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTAVKIV 929

Query: 121  LKYLRRTRDYARVW-RLNLILIGYTNSDFQTDIDSRKSTSRSVLILNEGAIVWKSTKQGC 180
            LKYLRRTRDY  V+   +LIL GYT+SDFQTD DSRKSTS SV  LN GA+VW+S KQGC
Sbjct: 930  LKYLRRTRDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGC 989

Query: 181  IADSTMEAEYVAACEAAKEVVWLKKFLAHLEIVLNMHLPITLYCDNSGAVANSKELRSHK 240
            IADSTMEAEYVAACEAAKE VWL+KFL  LE+V NM+LPITLYCDNSGAVANSKE RSHK
Sbjct: 990  IADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHK 1049

Query: 241  RGKHIEHKYQLIREIVQRGDVM 261
            RGKHIE KY LIREIVQRGDV+
Sbjct: 1050 RGKHIERKYHLIREIVQRGDVI 1071

[Close]

BLAST of Clc05G13400 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 94.7 bits (234), Expect = 1.1e-19
Identity = 71/255 (27.84%), Postives = 123/255 (48.24%), Query Frame = 0


Query: 1   MKDLGD-QYVLGIQIVRNRKNKMLAMSQASYIDKMFSRYKMQNSKRGLLPFRHEIHLSKE 60
           ++DLG  +Y LG++I R+     + + Q  Y   +     +   K   +P    +  S  
Sbjct: 310 LRDLGPLKYFLGLEIARSAAG--INICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAH 369

Query: 61  QCPKTPQEVEDMRRISYALAVGSLMYAMLCTRSNICYVVGIVSSYESNPEYDHWTTIKNI 120
               +  +  D +  +Y   +G LMY  + TR +I + V  +S +   P   H   +  I
Sbjct: 370 ----SGGDFVDAK--AYRRLIGRLMYLQI-TRLDISFAVNKLSQFSEAPRLAHQQAVMKI 429

Query: 121 LKYLRRTRDYARVW--RLNLILIGYTNSDFQTDIDSRKSTSRSVLILNEGAIVWKSTKQG 180
           L Y++ T      +  +  + L  ++++ FQ+  D+R+ST+   + L    I WKS KQ 
Sbjct: 430 LHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQ 489

Query: 181 CIADSTMEAEYVAACEAAKEVVWLKKFLAHLEIVLNMHLPITLYCDNSGAVANSKELRSH 240
            ++ S+ EAEY A   A  E++WL +F   L++ L+   P  L+CDN+ A+  +     H
Sbjct: 490 VVSKSSAEAEYRALSFATDEMMWLAQFFRELQLPLSK--PTLLFCDNTAAIHIATNAVFH 549

Query: 241 KRGKHIEHKYQLIRE 253
           +R KHIE     +RE
Sbjct: 550 ERTKHIESDCHSVRE 553

The following BLAST results are available for this feature:

BLAST of Clc05G13400 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0035907.1	5.9e-111	80.15	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0061170.1	1.3e-110	79.77	gag/pol protein [Cucumis melo var. makuwa]	[more]
ADJ18449.1	2.9e-110	79.39	gag/pol protein, partial [Bryonia dioica]	[more]
KAA0025945.1	4.2e-109	78.63	gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumi...	[more]
KAA0059226.1	4.2e-109	78.63	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Clc05G13400 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	6.5e-52	44.14	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	5.3e-30	33.21	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	4.1e-22	32.94	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P0CV72	1.2e-21	39.10	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]
Q94HW2	2.1e-18	32.14	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]

BLAST of Clc05G13400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T2V9	2.9e-111	80.15	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00760...	[more]
A0A5A7V1F5	6.4e-111	79.77	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold753G0044...	[more]
E2GK51	1.4e-110	79.39	Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1	[more]
A0A5A7TZD0	2.1e-109	78.63	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000...	[more]
A0A5A7UYE8	2.1e-109	78.63	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G0015...	[more]

BLAST of Clc05G13400 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	1.1e-19	27.84	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 148..254
None	No IPR available	PANTHER	PTHR11439:SF273	RIBOSOME BIOGENESIS PROTEIN BOP1 HOMOLOG	coord: 148..254
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 140..259 e-value: 1.97802E-49 score: 157.63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc05G13400.1	Clc05G13400.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding