Clc05G12460 (gene) Watermelon (cordophanus) v2

Overview
NameClc05G12460
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Descriptionpre-rRNA-processing protein TSR2
LocationClcChr05: 10430079 .. 10442178 (+)
RNA-Seq ExpressionClc05G12460
SyntenyClc05G12460
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGGCACCACTACTGAATATGGTATTGAGGTCGATGAAGCAACCAAATATCGTTCTCCTAAGAACATCCAGCCGTGCTTGATTAAGGTTCCTTTTGATAACAATATTTGCATTCTTTATATGAGATAGGCTTGTATATTGTGTTAGAAACCACTCAACTGAAGGAACCTTGTATAGAGGTTGTGCCATGTCGTATTTGCAACAATGTGCACAAAAAAATGGTTAGCGAAACATGAAAATAGTTGATTCCAATTATTTACAGTTACCGTTTAAGTTACCGCAATCGACTTGCAACTAGGAACCAAACACGCAAATTGGTAAAACAAGCAATAACTTTACACTAGCAAAGTAGATGATCAATACGACAATATCATATTGAAAAGAAAAAAAAAACACACAGTTAGTACAATGATAACTTCAAATCGGTAAGAGAGTCAATAAATGGCGTGATTAATGGATGAACAGTAAAAACGAAGTTCATGACATGTCATTAATGGATGAATAATAAGGACCTAACAACAGCGAACAAAAGGATTCGAATTTCAAAAAAATTATACGAAACATAGTGATGTTTCATGCCCTAGCCAAAAATGTATGAATATGAAATTAAACAAAGACTGTAGCATTAAACGAAGTAAAATGAATTATAATGGTCCAAAATGTTGTACTTACTAATGGATGATGAAACAAACTAGACGATAAACCATAAAAAATTTAAGTAAGAAGTTGAAGCGTGAAGAAGACATGAAGATAACTCAAACGATCAAGAGATATTCCGAAATTTTGTTGGATGGGCGTTTTGTCATTTGAAATACATCAACGCTTAGAATAGTTTAGTCTTTTTTAATTCAACTATTCGACTAGTGCTGCAAGGTAAACATGCTCAATCACGATCATTTTTTTGAAAAAATAGACGAGATAAAAAACAATAAACCCATTTTACAATTTAGGCCCATTTCAATCGGAATCCACCCAATTTGCCCCATTTCTCATTTGAGCGATAAACGCGGCCTAAGAAAAGAAAAAGAAAAATTAAATTTCAGCCGCTCGCCACTTGCAGTCAGCGCCGCCGCACGCTGGTGAGAGCACCGTCTCTCTCTTTCTTCTTTAGATTTCCCTCTCTCTCTCTCTCTTACTGGTTTCTCCCTTACGGCCGCCCACGTCCAGTCGCGTCGCTGCCCGTGGCCTTCAACCACACCGACGATCATCTGCTCGGCGCCGCCGCCGACACTGGAAATCACCGGAATCTCAATTTTTGGGTGAGTTCCTTTAAGTTCTTCAAGATCTTATGAATCAAATTTGGAATGTGTCTAAATGTTGCCTTAATTTTGGTTTTTGGGGCTGGATTTAAAGTCTTGAGGGATCGAAACCGCTGTCCAACAGATTAAAGATTGGGTTGTCGACTTTTGGTGAGATTCTAAAGTTTTAAAACCCTTTTGGACTTGGTTATATTGCTGTAATTTTTGGTGTTAAACCCTTAAATATGGTTTATGCTTAGGTTGGTTTTTGCATTTGCAACTCGGGTGGAGTTTCGGATTAGGCAAACGGTAGGGTAAGTGACTTGGATTTGTTTGAGTTGAATTTAAGATTGGGTTTTGGAATTAAAATTGGTTTATACTTTAGGGTTTGACTCAGGGTTTCATTAGGTAAGAAGGGAGTAATTTTCCTACTATTTGGACTCAGTTTCGAGGTAACTAACTTTACTATTGGAATGCTTTCGTCCCAGACGTCCTACTTTAGATAATATTGCTATGCTGAATAGGTTCTAGAAGCATGTCATGAGATGTTTGACCTTGAGATAATTGCCTATGTTTTTGTGGATGACAAGATTGTTTTGAGCGTGCCGAACTCTATGTGTTATGGTAAGATGTATATAGTATGAAATCATGATGGTTGCTACGATGTATGAAAGGAATGAATGATATGAACATATGTGAACTTTGATTTATGACATTGGACCCATTGAAAATATGTTGCATGTTAGTTAAATAGGTGATGATCTACCCTCCCATCACTATTATGTATGATTGTGAACTAACGAGTTCACTACCATGATAAGACCATGAACCAACAGGTTCACTACCACGACATCACCTTGAGTGGATAGGTTCACTACTATATATGATTGCGTTCGTTTGGGTCACTAGTTATGTGTGATAGGACGACATAGATTATTCACTTAGATGGCCATTCAGGATTAGTTATAGTATGCATGTCCATTAGTATGAATGCATTTATATCCATAAATACATAGCTTGACTCCAGTAGTGGGGTTACCTATTGAAAATACATCTTTCTTATGAACTTGTTTTACACACAATTTTTCCTTTTTCTTTTTTTGAAATTCCTCACTTGATTGCTTTTCGTTATAATTCATAAAGGGGAAGAAGATTTGTTTTGTTTGTTTCCTTGTTGCACGCATAAGTAGTGATACATACAAGAAGGTTACACTTGTTGACTTACCTGCGGTTTGATAATTGGGGTTTTAGGGTTTTACGCTTGGAGGCGAAGAGATGGAAGGTGGGGGAAACTGCCTTCTCCCAGCTGATGCTTCTCCGTTGTTCCAGGAAGGTATTGGGTTGGTTTTATCTCGTTGGTCAGCTCTTCAGTTGGCAGTGGAAAATGAGTGGGGTGGTCGTGACTCTCGTCGTAAAGTTGAACTATTATGTTCAGACGTTTCCACGTGGTTTACACAGGACAAAGGTAATTTTACTCCCTTCCACTTGGATAATCTTGGTTCCTTCCTATCTTCGTGCAGTTCCACTTTCTGTAGATTGATCAGTTTCTCAGGTCATGTAGTGTTTTATTTTGCTAGCAATTAAACATTTCTTTGTTGTAACTTTTTGAAGAAGCAGCTTGTGTAAACATCTAAAAGCGAATTCATTAAATGGCTAGATAAGTGTTTAAAATAGTTCCCTGAGGCGCATGCTGAGGCATGGCCCCTAGAAGCAAGGCTCCCCTAAGGTGCCTGAAATGTTGCTCTTCAAGCCTAAGTTTCTACTATTTTTTAAATAAGAATTTCTAACCTTTGAAGAAGAAACTCAGAATATTCTTAAAAAGCATACATTTTTTCTGAAATAACAGCTCTACTTACTTAAACTTTTCATCATCTTATTATTTGCAATACTATTTTTCTTCATTTATATAAGAAAATTATTTAGATTTTTCCATTGTGTGCCTCAAGTGTTTTAAAAAGCCCTCCTGGGCACACACTTAGGCATGCCTAGGCTGAAGGCGCAAGTCTAGTGCACTCACAAAATAAGGCAAGTGCACGCCTTTTGTGAAGCCCCAAGGCTTTAAGCCCTGGGCCATGTGGCTTTTTCATTATCTTTAAATTATAGTAATAATTAAGGTTTTTTCTTTTTTTAAATAAAGAAAAAAGTCAAATTTACAAAGCCTAAATGCAAAACTTCTTGTGCTTAGTTTTTTTTTCTTTTTTCGCCCCTCCAACTTGCTCTCTCTTCTTTATGCATTACTTTTATATATAGTGCGGCTCACAAAAAAAGCTTGCACCTTTGCCTAAGCCTTAAAAGACTATTGCGCTTTATTGCACCTTGAGCTTTAAAAAACATTGTGTGCCTCATAAAAAGTTATTTTTTTGGCTCCTCATGCTTAAGTCTCAAAGTGGCTGCTATTGTGCTTTAGTGCATCTCAAGCTTTAAAGAAATATAGGTTCTAGCATGTATTTTGTCTTTGATATTCATGTTGGTCAATTAATGCTTGAATTCTTTTCCTTTTGATACTCTGAATTATTTTGAACTTTCTAGATGATAGTTGATTTGTGGTGGAACTTGGTACTTTGTAAGCGTGACATTCATAGAATTTGGTTATCTTGATCTAACAGAGTTATAATTTTTATCTTGCAGAGCCACTATATATTGATGATTTAGAAATGATTCTTGATGAAGCTATGCTTTCATTGAATACTCAGGTTGATGACGGTAGCATTGAGGAGGTATATTTTATGCGCCTCTCAATCCTCGTTAGTCTTGGAGGAATGCCCTTTTTCTCATAACTGAGGCCTTTTTTTGGTTCCACATGATGAAATAGCATGCCGTCACATCAGACTAAATTGATACAAATATTTGTGTGAACTGCTATGACTAACTACTGCTGATGGATGGTTTTTCTACCCAAATTGACTCCGGATGGTTCTCAATGTGACTTGTGAAAATGGAATTCTGGCAGAGATATTGTTATAAATTTGCTTCCAACTCTTTGGTTGGAATAGTTTGAGATACCATCAAAATTTTAGCTATTTATTATCATAGCTGTGACTTTAGAAGATATTGCTTGGAAAACAGTGGTGATTGTATAAATACCATCCTAGTTGAACAGAACCTTATATAGTTCATTAATTTCCAATTCTAATAACTTTTTACGTCTAAGTTAAAAGTGAATTTCTTTTCTTTGTAGTCATTTTCAATTTTCTGTAGGAGGTTACTGGAAAAGTATGCTTAAAAAGCTCATAATTTCTAATTGATTTGTCCAATCACATTCTGTACCGTTGTTGCTCTCTTCCTCTTATATTAGAAGAATGAAATACCGAATGGATACAGATGGAGAAAATGAGGATAGGGTAAACGTTGAGTGAGATTAATGATGTATTATCTTGTATTTAAAATCCCCTCTGAAAAGTGAAATGTGTTACTATCTTGTAGCCTCCTTCAATAATTTTGAGTAAACTACTCTTATTAATGGATTTTGGTTGCTTGTGTTTCTTATCTAATAATTCAGGTAGCTGAAAGATTGATGGTCATGCATGAGGAATGTTTGGATGGTAACTTTAGCTCTATTGAAAGGTTAAGGCAAACCCCTCTTCCTCAAGTTGCTCATTCTCACGTTAGCCAGGTAACAAAAATTTTTGTACTAAACAGTGTTCTTTCGTAGGTCAACTTTAAGTATATGTTGAAAAGGAACTTGGTATCTGATAGATTTTTAGAGTACAGATTAGCATTGCTGTTTGTTATTCCTTGGTCTACATTGCCATAACTTTTGCTGAAGGGAGTAAACTTGGCCACTTGCATATTTCTGCATCAGCTTATTATATGGGTTATGTCATTCATACTACAAAACAAACATTTGTTTGTTATATATAGTATCTTCTAATCTTGACATTGATGAATTTTAAGGCTGTAAGTGACGATGAAGAAGAAGAAGATGTTGGAAATGATATGATGGTGGATGCCATACAACCAGCCCAATCCAGGCCTGTCAATCAGCCCAATCCAGAGGCTACGGCTGGAGCTGAAGATGGATGGGTTCAAGTCACATCGAGAAGAAGTAGGGGTACGAGAAATTAGTACTAATCTCTCATTGTCTTCTATTTATCTACGTATAATTATCTCAAATGAATCCCTTTTCCCTTTTCTTTGTACTGGGCATGAGCAATCAATTTTGTTTGGTGTGGAAATATATAAAATATTGGAATCCAGCTTGTCTTTTGAGAGGCAGCTATTATGCCATTGTTTTTTGAAGTATCATATTTACCCCAATCCTGTAAGCCGTCAAGTTTTGCTTCGATTGGTCAAAGGATTGGGTAAACGCCCAGAAAGATCATAGGTGATATGTAAAGCCTAGCAATTTCAAATTTAGGAACCTTTTATCGAACTCTTAATATTAAATTTTAAAATTTCCAAATCAATTTAGCGTCAATCCGAAGGGACAGATTAAATTTGGATTAACTTTTGATTGAAGACCAAGAAATAAAGAGAACTAGTTCTTTATTCCAAGTTTGAACCCTCCACAAACAAGTTGATCAGACCTATCTGAAGGCTCTTGGCATGCAACTCAAGACATGAATTGCAAAATTCAAGAAGCTCGCATACTAAACTTAAGAGAAAGCACTTAGGTCAATTTAATTCATCACAAAACTCCCGAAACAATCTAAAGACAAGGCTATGGAATTCCATGTTTTTCTTTCGCCAAAACAAACCAGGGTTGGAATTAGGAGTAGGATGGAGTCTTGGTGAATGAGGTGTTAACAATGAAATATATTCACATTGATACTATAGCAAAAATGTAAGTTTAGTATATTTTGGAACTCTATGTATTTTCATTCATATGGTATACCATTGATGTTAAAATGTCTAAAAGTGCACAAGCAACCTTCAATTACTTTTGTCCATCTCTTAATTGACATAAAAATTGTACTAGATTGGACCGGTAATTTTCTTGCCCTACATTGAAAAATGATGAAAAACTTTAAATTATTTTCATGCAAACTTATTAGCTATTGATTTGCAGTTTAGAAATTCAAACAAGGTACGGAGCAATGATGATTCATTTATAGCATAACTCAACAATTGGTTTAAAGTTTATACTATCAACTTCGAAATTAAAGATTCAATTTCTTATCCACGTATTGTAAATAAAATAAAATCATGAATATATATTACAAAAATGTCTTGTGTTTTTCTCGTGAATTTGTCAACTTGCATGTAGTAATTATTTAATGGATATATTTGTCATATAGTACCTAATAATCAAGCACCAATAAGTTTACGTTTTATGACTCTTTTCAAATATAGCAAAAGGAACCAAAATATTTACAAATATAACAAAATTTCACGCTTAACACAAATAGTAGTTTATCGTAATCTATCGGAGATAGATTGTGTATTTTACTATTAATTGTAAATATTTTCAACAGTTTTGCCATTTAAGATAATTTCTCTACACTTCGTAACTTTTGTTAATAAATAGAAACTAATCATCGCTAAGTATTTTCATTTATAGATATAAATTCTTTTGATAGCTCACAAAATTATCGATGATTCTATTAAGTTTTATAAAATTAAAAGATGTTAATGTTCCATGTATTTTTTATATTGGTTTCTCCATGCTTTTATTTATTTATTTTGATTTAATTTCTTATACTTTCGAGAAGTGATCTTTTTTATACGTATGGATAAGCAAAATTTTATAAACAAAAACCTTTTAATACACATTTATGAATACAGTTAAGGAACTTTAGTGAATGAAGTCTAATACTATAGTTAAAAAAGGACAATGGAAGAATAAAATGAATCCTTTTAAGTACATTAATATAATGAACATTTTAAATGTATTGAGACCAAAAATGAAATGAATATTTTAAAAAGTATAGGAATCGATCGAATTAAAGCTGAAGTAGGGTAAGTATTTAAATCTTTAAATTTTATACTTAATGTGTGATAGTTTGTTACACATAAGTGAATAAATTACATTACAATAAATGGGTATTTTTTAAATATCAGTATACATTTAGAAAATTAAGTAATAAAATATTGTAAAAGTACTTGCAAATATAGCAAAATTTATTTTTAGACCATAGAAAATGTCCAAAATGCGCACAAAAAAATATTGAAGACCGAAGATTCTTGATTTTAGTGATAAATAGTGAATTGTCTATCAAATTAATAAACAATGAAACCTTAAACAAATGAAGTATTAAATAAGTATATAAGTGATAAATTTCTATCTCTATTTATTAGATCAGTAATAGACATCTATCGTTGTTTATCACTTTGATAGATATTGAAAGAAGCTTGTCGGTTTAATTTCAATAAACTAATTTTGAATTTCATCTTGATAAAGTAATTTGGATTAAATTGGATTAGACTCTGATAAAATTATAAGTATATGACTATAATAGATCATTTTATATTTTTATTGATACTCATAAAAACTTTGATATACTATATCATTGATTGTGTTTGATAGACTCTATTGATATCTATATTATTGATTATGTATGATTGTATGATTATGTTTGATTATATATGTATATAGAAGTCTATTATTGATTTTTTTTCCAACTCTATTGGCTACAATCATTGAAACAATTCAAGTAACAAATAAAAGTCTATCAACAATAGATTTGATAAAATGAAAAGTATATTAGTGATAAGCTTCTATCACTATTTATCAATGATTAACTTAGTCAAAGTCTTAAAAGTTTATAATTGATATTCTTATTTGATAATTTATTTTTTTAAAGTTTGAATTTAGTGATAAATTAATAATTACTAAGCTAATTAATTATTAATTTTTTTAATAAATTACTTTATTGTGTTAAAAAATTAAGATGATTAGGGAATTTGTAAGTTAGGTTTTTTCTTTAACTTGTTTCAATGAACTTGAGTTAGTTAATTTAAGTTAACAAATTTCGATTTTTGTAAGGTTTATTTTTTTTACCAATTCTAATTCCAATATCTTTATCGTAAATTTAAGTTAGTTTTTGTTAACTTATGAATATATTTTTTTAAGGGAAGTAGTTTATGTTTCTTACTAATTTTTGATATTTACAAGTAATTTTTTAATTACGAAAAATCTCAACAAAATTTTTAATTTCTCAAATTTTGAGAATTAATAATAAAGTAAGCCAACAAAGTTGACCATTCAATTCAATTTATCTTTCCAAAAGAAATTAAAATTGCTCTTTTAATAAGTCGGAGACGTGGCGGAAATATAGGTGGGAACTTCCAAGTTCATTGAATAATAAAACTTGCTTTACCAATTTGTATACGGAGAAACAAGCTAATAGAATAGAAGTACTTGTGATCTGAAACAGGGGCGGCCATGGAGAAACCCGCGGCGGCGGCGATTTTGTGCTTCTTGCTACTTTCTGCGGCGGCGGTGGCGGTTTCAGCCGACGCTGCCGACTGCATTGACGGCTGTTTCACCGCTTGTGTCCAGAAAGACAGTGAGTTTTCTTTTTTTTTAACATTTCCTTTCTCTAAATTTCTTCGTATCTCACTTCTCAAATTGAGCCCTAATTCCTTTTTCCCCCTAATTTAATCGGCGTTTTAGGCATCTACGATTCTGAAATACTTGCATGGAAAATTATTGGGGTTTTCTTTTTTCTTTTTTTATAGCAATTTCTGAAGTTCCAGCAACTCATTATTGGGACAGAAAATAATTTGTTGTTTTAAAATATTTTAGTTGGTTTAAATACTATATTGTAGCCAGGTTAGCATATTCTACTAAAAATTATCATACACTATATTCCATAAATCTTTACCCCTTTTTATTTTCCTAAAATTTCTTTAGCTTTCGGATTGTTTCCTAGAAAATTTGAAAACAAAGGATTCAATAAAAACATAGTTGCATTTTATGTTTTCGGGTGTATGATTGATGGTAGATGCATAAATTTATGATTGTAAGGTTGATGAAAAAAGGATTATCACACAATGTTATAGCAATTCGAAAACCAAATTGTAAAGCATTGATAAAAATACTAAAAGACAAAACACAAGTCTTTATAACTTAATTCATTGTAATACCCTAGGTTTGGGGCAATGTGCTCAAGAAAGATAATTTCGTTAATATAAAGTAAAATAATTACAATGTTGTATTTATTTGTAAATAAATGACAATTACAGTGACCGCGAAAAACCTAACTTGGTGAATGGTTACTTAGGTTTTCCCTAAATGTGAGATTTTCTCTCATAGAAGTTCAGACTCCTTCTTGATGATACTCCTACCTTTTCACCTTCCAATGAAGAACACTTCACTCACAACACTTGAGCTCCTTTAGGTGTGAGAATCTTTCTCAATGATGCGGTAGACAATTCGATAAGATCTAGAGACACATTCAAGATGAATAGTAGCCAAAGCTTCACAATCGCAAAAATTGACACGTAATCTCCTTCTTGAACACCAACACCACAAATGACTCAATACACTTTCAAAAGCGAACAACCCTAAAAGGAGAACAATACTCTCTCAAATATACACGACGGAAAAGAAGAGTCGAACCCAAACCATAGTCACAGAGCCCAGAGAAGGAAAAGATCCGTAGGAACAATTACCTATAATTTTTAAGATAAGGAAAAAATATTCAGTCAGAAATAACAATCATAGAGACATCCCTAGAACAATCGAGGGACAAATAGACAAACATCTCATGAGATAACTGTCGCAACAACTTCAAAAAGTGTAGCTAATATCAAATCTTGAGGATCTCACATTTGAAAAATTAAGAGACCACATACTTTTTATAAAATAGATGAATCATCTATTTTTCTCATTACTAATTGATTTTAAGAGGGGTTGATGGATTTTGGTTAAAAAATAAATGAATCAAAGTCTTAAAAATGTATAGATTTGAAAATGACTTGAAAAAATTGGATATGGTGCAGCGAGGCTGATGCAGCGTTGTGAGGGCAAGTGTAGAATTAAGTGCGGTCCAGGTATTTATTTATTTCTTTATTTATTCGAATCAACTTTTATTATTTAATTCTTCTACATTTTCTCATTTCTTTAATTAAGCATATTTACATTTTTTTCATTTTCTATTCATTTTCCCTTAATTTAATTATTGATGTGATATCAAACTTTATACTTAGGTCTCTTTTATGATTTGAATATCAATTGAAATTTATGAGAATGATAGAATATTAATGGCAGCTGCTACTTCCATTTTTACTTTTTTTTTCTTTTTTCTTTTTTAATGAATTCTTTGATTGAATCAAATATTTCAATTTTCATATTTTGATGTAGTACTTTTTATTTATTTATTTTTTTTTTTTATGATACAAGGAAAAGAAATTACGATTAAAATAGAAAAACTATAGGGAAAAACTAATTTTATAATATCGATTAATTGAGAGGACAAATTTCTTTTTTTAGTACAAGAAGAGTGGAGAATTGAACTATGATTGGAAAAATAGATAAAAGAAGATACTCTTTAAATTTTTGTTTTTTTTCTTTCTTTTTTTAGAATTCGATTACTATGAATTTAAGAGAAAAACAGTTTAAATTTTAAAAATACAAAGTTAATATTAAAATTGTTATCAAGTACAATTAGCGGTAGGAGGATTCCTAACACAGATTTGTCATTAAGTTATAGTTGGTATATGCATAATTTAATTATGCTATCTTTGCAACTAAGCATAGTTCATAAAATAACATATATTTCTTAATTAATTGACATTTTTGTCCTAATAAATTGAATTTGTTATGATCTTGTTTTAGATTCATCTTCCAAACTATATTAATGCTTAAACATCTCTTGTGTCTAATAAATATATGACATATAAGAGTATAATGAATTGATTTAATGTTTAATAAATATATGACATATAAGAGTATAATGAATTGATTTAATGTTTAGTGAGATGATAAATTTTCAATTTTGTTTTCACCACATCCATGATTTTAAGAAAAATATTGAATATGTTAATGATTCAGACACAAAATTTAAATTTAAAGATCTATAAGAAAATTTTTAAAATTCAAAGGCTGAATAGGAAAAATATATATTTTGGGTGATCTGATTTTCATCTTTTATTATTATTATTTTTTTATCTTATTGTCACTATTGTTGTCTTAAATATAGAAGTTTTATCTTTTAATTTTGAGATTTTGATTTGATCATTTTTTGAATAAAAGAGGTTAAAAATTAAATTCGTAAAGGTCAAGTTCTGTTCATTAGTCTTCAGTGTTTCGTTTTATAAACATACTTTCATTGGTTGGTTTCTTTGCTTTTTTTTAATTATCTTTTAGAGATTTTTAAAAAAATTTCTTGCCAAGTTTTCAAAAAAGTTTGGATAGTCTAAGAAAAGAGTAGATTTTGAAAATGTATTATTGTTTTTTGAATTTAGTTATGTTTCTTAAGACGAAAACAATTGTAAATAAATTGTGAGAAAATAATTAATGATTATTAACGAAGCCTAAAAAGAAAAGAAAAAAGAGGTTCTAAATGTCAGTCTCAATATTTGGAAAGTGTCAATAAAAGGCCACATATATTTTTTTTCAAAAATTATAAATATTAAAATATCATAAAAATGTTTAAATTGATGGATAATCATACCCTTGTTAAATAAGAATAAATGTCTTGTAATTAACAAGAGGTGTAATATTTTATTGAATTCAGTGTTATATTTAGTTGGTTTTTCTTTTCTTTTTACTATTAACACTTAGGGGTTGAAGAGAGTCTTTCTATAATGTGTTCGTCAATAATATATGCTTAAATCAGTTAAGCTATTTAACCAAATTGTATAAAAATAGTCGTAACTTTGTAATGACGTAGCTTGATTCATTAGAAAAATAATACGTTTGATGTAAAAATGTGATTGCAGATAACGAAGTTGATGAAAATCTTACTCGTTGA

mRNA sequence

ATGAATGGCACCACTACTGAATATGGTATTGAGGTCGATGAAGCAACCAAATATCGTTCTCCTAAGAACATCCAGCCGTGCTTGATTAAGTCAGCGCCGCCGCACGCTGTCGCGTCGCTGCCCGTGGCCTTCAACCACACCGACGATCATCTGCTCGGCGCCGCCGCCGACACTGGAAATCACCGGAATCTCAATTTTTGGGGTTTTACGCTTGGAGGCGAAGAGATGGAAGGTGGGGGAAACTGCCTTCTCCCAGCTGATGCTTCTCCGTTGTTCCAGGAAGGTATTGGGTTGGTTTTATCTCGTTGGTCAGCTCTTCAGTTGGCAGTGGAAAATGAGTGGGGTGGTCGTGACTCTCGTCGTAAAGTTGAACTATTATGTTCAGACGTTTCCACGTGGTTTACACAGGACAAAGAGCCACTATATATTGATGATTTAGAAATGATTCTTGATGAAGCTATGCTTTCATTGAATACTCAGGTTGATGACGGTAGCATTGAGGAGGTAGCTGAAAGATTGATGGTCATGCATGAGGAATGTTTGGATGGTAACTTTAGCTCTATTGAAAGGTTAAGGCAAACCCCTCTTCCTCAAGTTGCTCATTCTCACGTTAGCCAGGCTGTAAGTGACGATGAAGAAGAAGAAGATGTTGGAAATGATATGATGGTGGATGCCATACAACCAGCCCAATCCAGGCCTGTCAATCAGCCCAATCCAGAGGCTACGGCTGGAGCTGAAGATGGATGGGTTCAAGTCACATCGAGAAGAAGTAGGGAAATTAAAATTGCTCTTTTAATAAGTCGGAGACGTGGCGGAAATATAGGGGCGGCCATGGAGAAACCCGCGGCGGCGGCGATTTTGTGCTTCTTGCTACTTTCTGCGGCGGCGGTGGCGGTTTCAGCCGACGCTGCCGACTGCATTGACGGCTGTTTCACCGCTTGTGTCCAGAAAGACACGAGGCTGATGCAGCGTTGTGAGGGCAAGTGTAGAATTAAGTGCGGTCCAGATAACGAAGTTGATGAAAATCTTACTCGTTGA

Coding sequence (CDS)

ATGAATGGCACCACTACTGAATATGGTATTGAGGTCGATGAAGCAACCAAATATCGTTCTCCTAAGAACATCCAGCCGTGCTTGATTAAGTCAGCGCCGCCGCACGCTGTCGCGTCGCTGCCCGTGGCCTTCAACCACACCGACGATCATCTGCTCGGCGCCGCCGCCGACACTGGAAATCACCGGAATCTCAATTTTTGGGGTTTTACGCTTGGAGGCGAAGAGATGGAAGGTGGGGGAAACTGCCTTCTCCCAGCTGATGCTTCTCCGTTGTTCCAGGAAGGTATTGGGTTGGTTTTATCTCGTTGGTCAGCTCTTCAGTTGGCAGTGGAAAATGAGTGGGGTGGTCGTGACTCTCGTCGTAAAGTTGAACTATTATGTTCAGACGTTTCCACGTGGTTTACACAGGACAAAGAGCCACTATATATTGATGATTTAGAAATGATTCTTGATGAAGCTATGCTTTCATTGAATACTCAGGTTGATGACGGTAGCATTGAGGAGGTAGCTGAAAGATTGATGGTCATGCATGAGGAATGTTTGGATGGTAACTTTAGCTCTATTGAAAGGTTAAGGCAAACCCCTCTTCCTCAAGTTGCTCATTCTCACGTTAGCCAGGCTGTAAGTGACGATGAAGAAGAAGAAGATGTTGGAAATGATATGATGGTGGATGCCATACAACCAGCCCAATCCAGGCCTGTCAATCAGCCCAATCCAGAGGCTACGGCTGGAGCTGAAGATGGATGGGTTCAAGTCACATCGAGAAGAAGTAGGGAAATTAAAATTGCTCTTTTAATAAGTCGGAGACGTGGCGGAAATATAGGGGCGGCCATGGAGAAACCCGCGGCGGCGGCGATTTTGTGCTTCTTGCTACTTTCTGCGGCGGCGGTGGCGGTTTCAGCCGACGCTGCCGACTGCATTGACGGCTGTTTCACCGCTTGTGTCCAGAAAGACACGAGGCTGATGCAGCGTTGTGAGGGCAAGTGTAGAATTAAGTGCGGTCCAGATAACGAAGTTGATGAAAATCTTACTCGTTGA

Protein sequence

MNGTTTEYGIEVDEATKYRSPKNIQPCLIKSAPPHAVASLPVAFNHTDDHLLGAAADTGNHRNLNFWGFTLGGEEMEGGGNCLLPADASPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDVSTWFTQDKEPLYIDDLEMILDEAMLSLNTQVDDGSIEEVAERLMVMHEECLDGNFSSIERLRQTPLPQVAHSHVSQAVSDDEEEEDVGNDMMVDAIQPAQSRPVNQPNPEATAGAEDGWVQVTSRRSREIKIALLISRRRGGNIGAAMEKPAAAAILCFLLLSAAAVAVSADAADCIDGCFTACVQKDTRLMQRCEGKCRIKCGPDNEVDENLTR
Homology
BLAST of Clc05G12460 vs. NCBI nr
Match: XP_023534881.1 (pre-rRNA-processing protein TSR2 homolog isoform X1 [Cucurbita pepo subsp. pepo] >XP_023534882.1 pre-rRNA-processing protein TSR2 homolog isoform X2 [Cucurbita pepo subsp. pepo] >XP_023534883.1 pre-rRNA-processing protein TSR2 homolog isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 307.0 bits (785), Expect = 2.1e-79
Identity = 162/194 (83.51%), Postives = 170/194 (87.63%), Query Frame = 0

Query: 76  MEGGGNCLLPADASPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDVSTWFT 135
           MEGG N LLPA A PLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSD+ TWFT
Sbjct: 1   MEGGENRLLPAGALPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT 60

Query: 136 QDKEPLYIDDLEMILDEAMLSLNTQVDDGSIEEVAERLMVMHEECLDGNFSSIERLRQTP 195
           Q+KEPLYIDDLEMILDEA+LSLNTQVDDGSIEEVAERL+VMHEECLDGNFSSIE+LRQ+P
Sbjct: 61  QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP 120

Query: 196 LPQVAHSHVSQAVSDDEEEED--------VGN---DMMVDAIQPAQSRPVNQPNPEATAG 255
           LPQVA SHVSQ +SDD+EEED        VGN   DMMVDA QP   RPVNQP PEATA 
Sbjct: 121 LPQVARSHVSQVMSDDDEEEDEEEGGDVVVGNGRRDMMVDATQP---RPVNQPTPEATAE 180

Query: 256 AEDGWVQVTSRRSR 259
           AEDGWVQVTSRRSR
Sbjct: 181 AEDGWVQVTSRRSR 191

BLAST of Clc05G12460 vs. NCBI nr
Match: XP_022936382.1 (pre-rRNA-processing protein TSR2 homolog [Cucurbita moschata])

HSP 1 Score: 305.4 bits (781), Expect = 6.0e-79
Identity = 161/194 (82.99%), Postives = 170/194 (87.63%), Query Frame = 0

Query: 76  MEGGGNCLLPADASPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDVSTWFT 135
           MEGG N LLPA A PLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSD+ TWFT
Sbjct: 1   MEGGENRLLPAGALPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT 60

Query: 136 QDKEPLYIDDLEMILDEAMLSLNTQVDDGSIEEVAERLMVMHEECLDGNFSSIERLRQTP 195
           Q+KEPLYIDDLEMILDEA+LSLNTQVDDGSIEEVAERL+VMHEECLDGNFSSIE+LRQ+P
Sbjct: 61  QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP 120

Query: 196 LPQVAHSHVSQAVSDDEEEED--------VGN---DMMVDAIQPAQSRPVNQPNPEATAG 255
           LP+VA SHVSQ +SDD+EEED        VGN   DMMVDAIQP    PVNQP PEATA 
Sbjct: 121 LPRVARSHVSQVMSDDDEEEDEEEGGDVVVGNGRRDMMVDAIQPT---PVNQPTPEATAE 180

Query: 256 AEDGWVQVTSRRSR 259
           AEDGWVQVTSRRSR
Sbjct: 181 AEDGWVQVTSRRSR 191

BLAST of Clc05G12460 vs. NCBI nr
Match: XP_016903483.1 (PREDICTED: pre-rRNA-processing protein TSR2 [Cucumis melo] >TYK31303.1 pre-rRNA-processing protein TSR2 [Cucumis melo var. makuwa])

HSP 1 Score: 305.4 bits (781), Expect = 6.0e-79
Identity = 157/189 (83.07%), Postives = 170/189 (89.95%), Query Frame = 0

Query: 76  MEGGGNCLLPADASPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDVSTWFT 135
           MEGGGN LLPADA PLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSD+ TWF 
Sbjct: 1   MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFA 60

Query: 136 QDKEPLYIDDLEMILDEAMLSLNTQVDDGSIEEVAERLMVMHEECLDGNFSSIERLRQTP 195
           Q+KE LYIDDLE ILDEAMLSLNTQVDDGSIEEVAERL+ MHEEC+D NFSSIERLRQ+P
Sbjct: 61  QNKEQLYIDDLETILDEAMLSLNTQVDDGSIEEVAERLIFMHEECVDRNFSSIERLRQSP 120

Query: 196 LPQVAHSHVSQAVSDDEEEEDV-----GNDMMVDAIQPAQSRPVN-QPNPEATAGAEDGW 255
            PQVAH+HV+QA SDD++++DV      NDMMVDA+QPAQSRPVN Q NPEATA AEDGW
Sbjct: 121 RPQVAHAHVNQAASDDDDDDDVEEDVNRNDMMVDAVQPAQSRPVNHQLNPEATAEAEDGW 180

Query: 256 VQVTSRRSR 259
           VQVTSRR+R
Sbjct: 181 VQVTSRRNR 189

BLAST of Clc05G12460 vs. NCBI nr
Match: XP_022975934.1 (pre-rRNA-processing protein TSR2 homolog [Cucurbita maxima])

HSP 1 Score: 304.7 bits (779), Expect = 1.0e-78
Identity = 161/193 (83.42%), Postives = 170/193 (88.08%), Query Frame = 0

Query: 76  MEGGGNCLLPADASPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDVSTWFT 135
           MEGG N LLPA A P FQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSD+ TWFT
Sbjct: 1   MEGGENRLLPAVALPSFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT 60

Query: 136 QDKEPLYIDDLEMILDEAMLSLNTQVDDGSIEEVAERLMVMHEECLDGNFSSIERLRQTP 195
           Q+KEPLYIDDLEMILDEA+LSLNTQVDDGSIEEVAERL+VMHEECLDGNFSSIE+LRQ+P
Sbjct: 61  QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP 120

Query: 196 LPQVAHSHVSQAVSDDEEEE-------DVGN---DMMVDAIQPAQSRPVNQPNPEATAGA 255
           LP+VA SHVSQ +SDDEEE+       DVGN   DMMVDAIQP   RPVNQP PEATA A
Sbjct: 121 LPKVARSHVSQVMSDDEEEDEEEGGDVDVGNGRRDMMVDAIQP---RPVNQPTPEATAEA 180

Query: 256 EDGWVQVTSRRSR 259
           EDGWVQVTSRRSR
Sbjct: 181 EDGWVQVTSRRSR 190

BLAST of Clc05G12460 vs. NCBI nr
Match: XP_004136275.1 (pre-rRNA-processing protein TSR2 homolog [Cucumis sativus] >KGN60230.1 hypothetical protein Csa_002055 [Cucumis sativus])

HSP 1 Score: 302.0 bits (772), Expect = 6.7e-78
Identity = 153/189 (80.95%), Postives = 172/189 (91.01%), Query Frame = 0

Query: 76  MEGGGNCLLPADASPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDVSTWFT 135
           MEGGGN LLPA A PLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLC+++ TWFT
Sbjct: 1   MEGGGNRLLPAHAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCAEIFTWFT 60

Query: 136 QDKEPLYIDDLEMILDEAMLSLNTQVDDGSIEEVAERLMVMHEECLDGNFSSIERLRQTP 195
           Q+KE LYIDDLE+ILDEAMLSL+TQVDDGSIEEVAE+L++MHEEC+DGNFSSIERLRQ+P
Sbjct: 61  QNKEQLYIDDLEIILDEAMLSLSTQVDDGSIEEVAEKLIIMHEECVDGNFSSIERLRQSP 120

Query: 196 LPQVAHSHVSQAVSDDEEEEDV-----GNDMMVDAIQPAQSRPVN-QPNPEATAGAEDGW 255
            PQVAH+HV+QA SDD++++DV      NDMMVDA+QPAQSRP N Q NPEATA AEDGW
Sbjct: 121 RPQVAHAHVNQAESDDDDDDDVEEDVNRNDMMVDAVQPAQSRPANPQLNPEATAEAEDGW 180

Query: 256 VQVTSRRSR 259
           VQVTSRR+R
Sbjct: 181 VQVTSRRNR 189

BLAST of Clc05G12460 vs. ExPASy Swiss-Prot
Match: Q969E8 (Pre-rRNA-processing protein TSR2 homolog OS=Homo sapiens OX=9606 GN=TSR2 PE=1 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 8.1e-10
Identity = 56/187 (29.95%), Postives = 92/187 (49.20%), Query Frame = 0

Query: 87  DASPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDVSTWFTQDKEPLYIDDL 146
           DA  LF+ G+   L  W ALQ+AVEN +GG  S+ K + L   V  +F ++ + L +D++
Sbjct: 7   DARALFRAGVCAALEAWPALQIAVENGFGGVHSQEKAKWLGGAVEDYFMRNAD-LELDEV 66

Query: 147 EMILDEAMLS-LNTQVDDGSIEEVAERLMVMHEECLDGNFSSIERLRQTPLP---QVAHS 206
           E  L E + +  +T V+DGS+ +V+++L  M      G+ +++  +         +V  +
Sbjct: 67  EDFLGELLTNEFDTVVEDGSLPQVSQQLQTMFHHFQRGDGAALREMASCITQRKCKVTAT 126

Query: 207 HVSQAVSDDEEEEDVGN--DMMVDAI-----------QPAQSRPVNQPNPEATAGAEDGW 257
            +  A   DE+E+DV +  +M V A            QP  S P  Q   E     EDGW
Sbjct: 127 ALKTARETDEDEDDVDSVEEMEVTATNDGAATDGVCPQPEPSDPDAQTIKEEDI-VEDGW 186

BLAST of Clc05G12460 vs. ExPASy Swiss-Prot
Match: Q3T090 (Pre-rRNA-processing protein TSR2 homolog OS=Bos taurus OX=9913 GN=TSR2 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.8e-09
Identity = 54/186 (29.03%), Postives = 89/186 (47.85%), Query Frame = 0

Query: 87  DASPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDVSTWFTQDKEPLYIDDL 146
           D+  LF   +   L  W ALQ+AVEN +GG  S+ K E L   V  +F ++ + L +D++
Sbjct: 7   DSRALFGAAVRAALEAWPALQIAVENGFGGVYSQEKAEWLGGAVEEYFFRNAD-LELDEV 66

Query: 147 EMILDEAMLS-LNTQVDDGSIEEVAERLMVMHEECLDGNFSSIE-----------RLRQT 206
           E  L E M++  +T V+DGS+ +V+++L  M      G+ ++++           ++R T
Sbjct: 67  EDFLGELMMNEFDTVVEDGSLPQVSQQLQTMFHHFQKGDRAALKEMASLITQRKCKVRAT 126

Query: 207 PLPQVAHSHVSQAVSDDEEEE--DVGNDMMVDAI--QPAQSRPVNQPNPEATAGAEDGWV 257
            LP    +      +  EE E     +    D +  QP  S P +Q   E     EDGW 
Sbjct: 127 ALPTAGETDEDDDANSVEEMEVAATNDGAATDGVCPQPEPSGPDSQTIKEEDI-VEDGWT 186

BLAST of Clc05G12460 vs. ExPASy Swiss-Prot
Match: Q3KRG3 (Pre-rRNA-processing protein TSR2 homolog OS=Danio rerio OX=7955 GN=tsr2 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.8e-09
Identity = 49/181 (27.07%), Postives = 88/181 (48.62%), Query Frame = 0

Query: 84  LPADASPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDVSTWFTQDKEPLYI 143
           L +    +F E +  VL  W  LQ+AV+N +GG  S++K E +   +  +FT D   L  
Sbjct: 4   LSSSTREVFSEAVRAVLETWPVLQIAVDNGFGGAFSQQKAEWMVDALQQYFT-DNGDLQP 63

Query: 144 DDLEMILDEAMLS-LNTQVDDGSIEEVAERLMVMHEECLDGNFSSI-ERLRQTPLPQVAH 203
           D++E  + E M +  +T VDDGS+ +VA+++  M ++C  G  + + E++ +    + + 
Sbjct: 64  DEVEDFISELMNNEFDTVVDDGSLPQVAQQVCGMFQQCEQGRLAEVREQILKLNQKKTSS 123

Query: 204 SHVSQAVS------DDEEEEDVGNDMMVDAIQPAQSRPVNQPNPEATAGAEDGWVQVTSR 257
                  +      DD++EE+  +     A     S  VN  + E     +DGW  V  +
Sbjct: 124 GRAKATPAQTPQDDDDDDEEEAMDCEGGSAGASVSSTAVNDLHHEEE--EDDGWTVVRRK 181

BLAST of Clc05G12460 vs. ExPASy Swiss-Prot
Match: Q8C8T8 (Pre-rRNA-processing protein TSR2 homolog OS=Mus musculus OX=10090 GN=Tsr2 PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 5.2e-09
Identity = 54/187 (28.88%), Postives = 88/187 (47.06%), Query Frame = 0

Query: 87  DASPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDVSTWFTQDKEPLYIDDL 146
           D   LF   +   L  W ALQ+AVEN +GG  S+ K E L   V  +F  + + L ++++
Sbjct: 7   DVRVLFGAAVRAALEAWPALQIAVENGFGGVHSQEKAEWLGGAVEDYFIANAD-LELEEI 66

Query: 147 EMILDEAMLS-LNTQVDDGSIEEVAERLMVMHEECLDGNFSSIE-----------RLRQT 206
           E  L E M +  +T V+DGS+ +V+++L  M      G+ ++++           ++  T
Sbjct: 67  EDFLGELMTTEFDTVVEDGSLPQVSQQLQTMFHHFQKGDGAALQEMTSQINQKKCKVTAT 126

Query: 207 PLPQVAHSHVSQAVSDDEEEEDV---GNDMMVDAI--QPAQSRPVNQPNPEATAGAEDGW 257
           PL     + V++   D  EE +V    +    D +  QP  S P  Q   E     EDGW
Sbjct: 127 PLMTAKETDVAEDDVDSVEEMEVTATNDGATTDEVCPQPQPSDPDTQTIKEEDI-VEDGW 186

BLAST of Clc05G12460 vs. ExPASy Swiss-Prot
Match: Q3KPN2 (Pre-rRNA-processing protein TSR2 homolog OS=Xenopus laevis OX=8355 GN=tsr2 PE=2 SV=2)

HSP 1 Score: 63.2 bits (152), Expect = 6.8e-09
Identity = 56/191 (29.32%), Postives = 90/191 (47.12%), Query Frame = 0

Query: 87  DASPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDVSTWFTQ--DKEPLYID 146
           D+  LF+E    VL  W  LQ+AVEN +GG  S+ K E +   +  +F+   D E   ++
Sbjct: 7   DSRGLFREATKAVLGSWPVLQIAVENGFGGSHSQEKAEWMVGAIDQYFSSNADLEQYEVE 66

Query: 147 D--LEMILDEAMLSLNTQVDDGSIEEVAERLMVMHEECLDGNFSSIE----RLRQ----- 206
           D  + M+ DE     +T V+DGS   VA++L V+  +C  G  ++++    +L Q     
Sbjct: 67  DSIMGMMNDE----FDTIVEDGSQALVAQQLCVLFSQCRQGETAAVQAKIAQLAQKKYDV 126

Query: 207 -TPLPQVAHSHVSQAVSDDEEE----EDVGNDMMVDAIQPA---QSRPVNQPNPEATAGA 257
              + +V  S   +  SDDEEE    E+        ++  A    S P  +  PE     
Sbjct: 127 RAKVQEVTPSDDEEESSDDEEEAMDCENTPGSSSAASLSGALGPSSAPKKEEEPE----- 186

BLAST of Clc05G12460 vs. ExPASy TrEMBL
Match: A0A5D3E598 (Pre-rRNA-processing protein TSR2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G006020 PE=3 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 2.9e-79
Identity = 157/189 (83.07%), Postives = 170/189 (89.95%), Query Frame = 0

Query: 76  MEGGGNCLLPADASPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDVSTWFT 135
           MEGGGN LLPADA PLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSD+ TWF 
Sbjct: 1   MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFA 60

Query: 136 QDKEPLYIDDLEMILDEAMLSLNTQVDDGSIEEVAERLMVMHEECLDGNFSSIERLRQTP 195
           Q+KE LYIDDLE ILDEAMLSLNTQVDDGSIEEVAERL+ MHEEC+D NFSSIERLRQ+P
Sbjct: 61  QNKEQLYIDDLETILDEAMLSLNTQVDDGSIEEVAERLIFMHEECVDRNFSSIERLRQSP 120

Query: 196 LPQVAHSHVSQAVSDDEEEEDV-----GNDMMVDAIQPAQSRPVN-QPNPEATAGAEDGW 255
            PQVAH+HV+QA SDD++++DV      NDMMVDA+QPAQSRPVN Q NPEATA AEDGW
Sbjct: 121 RPQVAHAHVNQAASDDDDDDDVEEDVNRNDMMVDAVQPAQSRPVNHQLNPEATAEAEDGW 180

Query: 256 VQVTSRRSR 259
           VQVTSRR+R
Sbjct: 181 VQVTSRRNR 189

BLAST of Clc05G12460 vs. ExPASy TrEMBL
Match: A0A6J1F8A7 (pre-rRNA-processing protein TSR2 homolog OS=Cucurbita moschata OX=3662 GN=LOC111443017 PE=3 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 2.9e-79
Identity = 161/194 (82.99%), Postives = 170/194 (87.63%), Query Frame = 0

Query: 76  MEGGGNCLLPADASPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDVSTWFT 135
           MEGG N LLPA A PLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSD+ TWFT
Sbjct: 1   MEGGENRLLPAGALPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT 60

Query: 136 QDKEPLYIDDLEMILDEAMLSLNTQVDDGSIEEVAERLMVMHEECLDGNFSSIERLRQTP 195
           Q+KEPLYIDDLEMILDEA+LSLNTQVDDGSIEEVAERL+VMHEECLDGNFSSIE+LRQ+P
Sbjct: 61  QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP 120

Query: 196 LPQVAHSHVSQAVSDDEEEED--------VGN---DMMVDAIQPAQSRPVNQPNPEATAG 255
           LP+VA SHVSQ +SDD+EEED        VGN   DMMVDAIQP    PVNQP PEATA 
Sbjct: 121 LPRVARSHVSQVMSDDDEEEDEEEGGDVVVGNGRRDMMVDAIQPT---PVNQPTPEATAE 180

Query: 256 AEDGWVQVTSRRSR 259
           AEDGWVQVTSRRSR
Sbjct: 181 AEDGWVQVTSRRSR 191

BLAST of Clc05G12460 vs. ExPASy TrEMBL
Match: A0A1S4E5H6 (pre-rRNA-processing protein TSR2 OS=Cucumis melo OX=3656 GN=LOC103503689 PE=3 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 2.9e-79
Identity = 157/189 (83.07%), Postives = 170/189 (89.95%), Query Frame = 0

Query: 76  MEGGGNCLLPADASPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDVSTWFT 135
           MEGGGN LLPADA PLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSD+ TWF 
Sbjct: 1   MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFA 60

Query: 136 QDKEPLYIDDLEMILDEAMLSLNTQVDDGSIEEVAERLMVMHEECLDGNFSSIERLRQTP 195
           Q+KE LYIDDLE ILDEAMLSLNTQVDDGSIEEVAERL+ MHEEC+D NFSSIERLRQ+P
Sbjct: 61  QNKEQLYIDDLETILDEAMLSLNTQVDDGSIEEVAERLIFMHEECVDRNFSSIERLRQSP 120

Query: 196 LPQVAHSHVSQAVSDDEEEEDV-----GNDMMVDAIQPAQSRPVN-QPNPEATAGAEDGW 255
            PQVAH+HV+QA SDD++++DV      NDMMVDA+QPAQSRPVN Q NPEATA AEDGW
Sbjct: 121 RPQVAHAHVNQAASDDDDDDDVEEDVNRNDMMVDAVQPAQSRPVNHQLNPEATAEAEDGW 180

Query: 256 VQVTSRRSR 259
           VQVTSRR+R
Sbjct: 181 VQVTSRRNR 189

BLAST of Clc05G12460 vs. ExPASy TrEMBL
Match: A0A6J1IM14 (pre-rRNA-processing protein TSR2 homolog OS=Cucurbita maxima OX=3661 GN=LOC111476490 PE=3 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 5.0e-79
Identity = 161/193 (83.42%), Postives = 170/193 (88.08%), Query Frame = 0

Query: 76  MEGGGNCLLPADASPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDVSTWFT 135
           MEGG N LLPA A P FQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSD+ TWFT
Sbjct: 1   MEGGENRLLPAVALPSFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT 60

Query: 136 QDKEPLYIDDLEMILDEAMLSLNTQVDDGSIEEVAERLMVMHEECLDGNFSSIERLRQTP 195
           Q+KEPLYIDDLEMILDEA+LSLNTQVDDGSIEEVAERL+VMHEECLDGNFSSIE+LRQ+P
Sbjct: 61  QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP 120

Query: 196 LPQVAHSHVSQAVSDDEEEE-------DVGN---DMMVDAIQPAQSRPVNQPNPEATAGA 255
           LP+VA SHVSQ +SDDEEE+       DVGN   DMMVDAIQP   RPVNQP PEATA A
Sbjct: 121 LPKVARSHVSQVMSDDEEEDEEEGGDVDVGNGRRDMMVDAIQP---RPVNQPTPEATAEA 180

Query: 256 EDGWVQVTSRRSR 259
           EDGWVQVTSRRSR
Sbjct: 181 EDGWVQVTSRRSR 190

BLAST of Clc05G12460 vs. ExPASy TrEMBL
Match: A0A0A0LDZ8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889860 PE=3 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 3.2e-78
Identity = 153/189 (80.95%), Postives = 172/189 (91.01%), Query Frame = 0

Query: 76  MEGGGNCLLPADASPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDVSTWFT 135
           MEGGGN LLPA A PLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLC+++ TWFT
Sbjct: 1   MEGGGNRLLPAHAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCAEIFTWFT 60

Query: 136 QDKEPLYIDDLEMILDEAMLSLNTQVDDGSIEEVAERLMVMHEECLDGNFSSIERLRQTP 195
           Q+KE LYIDDLE+ILDEAMLSL+TQVDDGSIEEVAE+L++MHEEC+DGNFSSIERLRQ+P
Sbjct: 61  QNKEQLYIDDLEIILDEAMLSLSTQVDDGSIEEVAEKLIIMHEECVDGNFSSIERLRQSP 120

Query: 196 LPQVAHSHVSQAVSDDEEEEDV-----GNDMMVDAIQPAQSRPVN-QPNPEATAGAEDGW 255
            PQVAH+HV+QA SDD++++DV      NDMMVDA+QPAQSRP N Q NPEATA AEDGW
Sbjct: 121 RPQVAHAHVNQAESDDDDDDDVEEDVNRNDMMVDAVQPAQSRPANPQLNPEATAEAEDGW 180

Query: 256 VQVTSRRSR 259
           VQVTSRR+R
Sbjct: 181 VQVTSRRNR 189

BLAST of Clc05G12460 vs. TAIR 10
Match: AT5G27990.1 (Pre-rRNA-processing protein TSR2, conserved region )

HSP 1 Score: 127.9 bits (320), Expect = 1.6e-29
Identity = 75/184 (40.76%), Postives = 114/184 (61.96%), Query Frame = 0

Query: 81  NCLLPADASPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDVSTWFTQDKEP 140
           N  L  +A  + +EGIGL+L RW+A++ AVEN WGGRDS+ K     + V  +F Q K+P
Sbjct: 4   NATLTVEARDILKEGIGLILWRWTAMRAAVENGWGGRDSQAKANETVATVFDFFIQSKDP 63

Query: 141 LY-IDDLEMILDEAMLSLNTQVDDGSIEEVAERLMVMHEECLDGNFSSIERLRQTPLPQV 200
           +  I+ L  +LD+ +  LNT  +DGS++EVA  L+ ++E+C +GN+  +E LR T   Q 
Sbjct: 64  VKDIEKLGDLLDKGLDELNTTAEDGSVDEVANLLVDLYEDCCNGNYEMLEELRAT-YSQT 123

Query: 201 AHSHVSQAVSDDE----EEEDVGNDMMVDAI-QPAQSRPVNQPNPEATAGAEDGWVQVTS 259
           + S V  +  DDE    E++D   DMMVDA  Q  ++ PV++P       A+DGW  V+S
Sbjct: 124 SASVVKVSNGDDEESDDEDDDQTTDMMVDASNQKQEAMPVDEP------VADDGWTVVSS 180

BLAST of Clc05G12460 vs. TAIR 10
Match: AT3G22510.1 (Pre-rRNA-processing protein TSR2, conserved region )

HSP 1 Score: 89.4 bits (220), Expect = 6.3e-18
Identity = 45/100 (45.00%), Postives = 69/100 (69.00%), Query Frame = 0

Query: 85  PADASPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDVSTWFTQDKEPLYID 144
           P D   + Q  IG +LSRW  LQ+AV+N+WGG DS +K + L  ++    +Q    + ++
Sbjct: 24  PMDDDSVLQRDIGELLSRWGGLQMAVKNQWGGHDSLKKSQELAHNLFHLISQ-SNVITVE 83

Query: 145 DLEMILDEA-MLSLNTQVDDGSIEEVAERLMVMHEECLDG 184
           ++E +L E+ +LS NT+++DGSIEEVAE+LM++HEE L G
Sbjct: 84  EIENLLHESLLLSFNTEIEDGSIEEVAEQLMILHEEHLRG 122

BLAST of Clc05G12460 vs. TAIR 10
Match: AT1G25275.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 18 Blast hits to 18 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 51.2 bits (121), Expect = 1.9e-06
Identity = 26/56 (46.43%), Postives = 33/56 (58.93%), Query Frame = 0

Query: 283 AAAILCFLLLSAAAVAVSAD--AADCIDGCFTACVQKDTRLMQRCEGKCRIKCGPD 337
           AA ++   L S+  +   A     DC DGC TACVQ+D R   RC+ KC I+CGPD
Sbjct: 10  AALLIMMALCSSLNMVAEAQLGPGDCYDGCSTACVQRDPRKTSRCDRKCSIRCGPD 65

BLAST of Clc05G12460 vs. TAIR 10
Match: AT1G25275.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 49.3 bits (116), Expect = 7.3e-06
Identity = 25/56 (44.64%), Postives = 32/56 (57.14%), Query Frame = 0

Query: 283 AAAILCFLLLSAAAVAVSAD--AADCIDGCFTACVQKDTRLMQRCEGKCRIKCGPD 337
           AA ++   L S+  +   A     DC DGC TACVQ+D     RC+ KC I+CGPD
Sbjct: 10  AALLIMMALCSSLNMVAEAQLGPGDCYDGCSTACVQRDREKTSRCDRKCSIRCGPD 65

BLAST of Clc05G12460 vs. TAIR 10
Match: AT1G25275.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 48.9 bits (115), Expect = 9.5e-06
Identity = 25/55 (45.45%), Postives = 32/55 (58.18%), Query Frame = 0

Query: 283 AAAILCFLLLSAAAVAVSAD--AADCIDGCFTACVQKDTRLMQRCEGKCRIKCGP 336
           AA ++   L S+  +   A     DC DGC TACVQ+D R   RC+ KC I+CGP
Sbjct: 10  AALLIMMALCSSLNMVAEAQLGPGDCYDGCSTACVQRDPRKTSRCDRKCSIRCGP 64

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023534881.12.1e-7983.51pre-rRNA-processing protein TSR2 homolog isoform X1 [Cucurbita pepo subsp. pepo]... [more]
XP_022936382.16.0e-7982.99pre-rRNA-processing protein TSR2 homolog [Cucurbita moschata][more]
XP_016903483.16.0e-7983.07PREDICTED: pre-rRNA-processing protein TSR2 [Cucumis melo] >TYK31303.1 pre-rRNA-... [more]
XP_022975934.11.0e-7883.42pre-rRNA-processing protein TSR2 homolog [Cucurbita maxima][more]
XP_004136275.16.7e-7880.95pre-rRNA-processing protein TSR2 homolog [Cucumis sativus] >KGN60230.1 hypotheti... [more]
Match NameE-valueIdentityDescription
Q969E88.1e-1029.95Pre-rRNA-processing protein TSR2 homolog OS=Homo sapiens OX=9606 GN=TSR2 PE=1 SV... [more]
Q3T0901.8e-0929.03Pre-rRNA-processing protein TSR2 homolog OS=Bos taurus OX=9913 GN=TSR2 PE=2 SV=1[more]
Q3KRG31.8e-0927.07Pre-rRNA-processing protein TSR2 homolog OS=Danio rerio OX=7955 GN=tsr2 PE=2 SV=... [more]
Q8C8T85.2e-0928.88Pre-rRNA-processing protein TSR2 homolog OS=Mus musculus OX=10090 GN=Tsr2 PE=1 S... [more]
Q3KPN26.8e-0929.32Pre-rRNA-processing protein TSR2 homolog OS=Xenopus laevis OX=8355 GN=tsr2 PE=2 ... [more]
Match NameE-valueIdentityDescription
A0A5D3E5982.9e-7983.07Pre-rRNA-processing protein TSR2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A6J1F8A72.9e-7982.99pre-rRNA-processing protein TSR2 homolog OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A1S4E5H62.9e-7983.07pre-rRNA-processing protein TSR2 OS=Cucumis melo OX=3656 GN=LOC103503689 PE=3 SV... [more]
A0A6J1IM145.0e-7983.42pre-rRNA-processing protein TSR2 homolog OS=Cucurbita maxima OX=3661 GN=LOC11147... [more]
A0A0A0LDZ83.2e-7880.95Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889860 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT5G27990.11.6e-2940.76Pre-rRNA-processing protein TSR2, conserved region [more]
AT3G22510.16.3e-1845.00Pre-rRNA-processing protein TSR2, conserved region [more]
AT1G25275.11.9e-0646.43unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response... [more]
AT1G25275.27.3e-0644.64unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response... [more]
AT1G25275.39.5e-0645.45unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019398Pre-rRNA-processing protein TSR2PFAMPF10273WGGcoord: 92..171
e-value: 1.8E-21
score: 76.4
IPR019398Pre-rRNA-processing protein TSR2PANTHERPTHR21250UNCHARACTERIZEDcoord: 84..257

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc05G12460.1Clc05G12460.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
cellular_component GO:0005634 nucleus