Clc05G12130 (gene) Watermelon (cordophanus) v2

Overview
NameClc05G12130
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
LocationClcChr05: 10026288 .. 10027250 (+)
RNA-Seq ExpressionClc05G12130
SyntenyClc05G12130
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTACAAGATCACGTGGGTTGTGTGCATTTGGTTGGATTGAAGTTTATCCCTAGATGCTTGGAGGTGAAGCTTCTTGAAGCTATGACGATATGCTTTGGACTTGAGAACCTATCTTCCATCTATGTTTTGAATATCTTGGTTGAGTCTAATTATTTAGAGGTCATCAATTTGTTGAACGATGGTGCTGTTGATTTGACTGAATTCTCCTTCCTTATCGAGGAGACAAAGAATAGAGGCGATGAGTTGAGGGTTGTCTCCTTCCTATAGTTGGTACTGACACATTGTATCGCGTGCAAAGTTTTGGAGGATCTAGAATTTTTAATTCTTTTTACTCCTTATGGTTTACATCTATGTTTCGTGATATTCTCACGTAGCATTATTAATTTTATTGTTTTGCTTTTTGTTCTTAAAAAAATAGTTTGAGTTTTAGCCCGATCCACCCTCACATGCTTTTAAATAGTTCATGATTAACCATTAAAATTATATATATATGTTTTGAGAATATTAAAATCACATATTGAAAAGATAAGAAAAATGAATTCAAATAAGTACAAAAGTTATAATTATAAAAAAAAAATAATAATAATCATAATAATAATGAGTACAAAAGTTATAGAAAAGAATAATTATTAAACCATATCGAACACACAAGATTAGAGTTTGTTTACGTCTGAAATTAAATAATATAAAAAGTTAAAAGAGTAAAAGAATATGTATGTCCAGGATCGTTCCTCCACGGCCGAAATTAGAATCAACCTGTCGTCGTCCGTCCTTCGCTCGCTTTCTCCTCCTCCTCTTCTTCTCTCTCTCGGGACCTCCATTTCTGAGGAAAATTTTATAGTTTCAGGTTTTTTTCTTGTTGTTTCTGGGATTTCCATGGAAGTTTCGTTATGTTCAATGCTACCAACATTCAAGCTCTGCCCTTCTACTGGTTGTTGTTGCTGTTGCTGTTGTTCCTGA

mRNA sequence

ATGGTACAAGATCACGTGGGTTGTGTGCATTTGGTTGGATTGAAGTTTATCCCTAGATGCTTGGAGGTGAAGCTTCTTGAAGCTATGACGATATGCTTTGGACTTGAGAACCTATCTTCCATCTATGTTTTGAATATCTTGGTTGAGTCTAATTATTTAGAGGTCATCAATTTGTTGAACGATGGTGCTGTTGATTTGACTGAATTCTCCTTCCTTATCGAGGAGACAAAGAATAGAGGCGATGAGTTGAGGGATCGTTCCTCCACGGCCGAAATTAGAATCAACCTGTCGTCGTCCGTCCTTCGCTCGCTTTCTCCTCCTCCTCTTCTTCTCTCTCTCGGGACCTCCATTTCTGAGGAAAATTTTATAGTTTCAGGTTTTTTTCTTGTTGTTTCTGGGATTTCCATGGAAGTTTCGTTATGTTCAATGCTACCAACATTCAAGCTCTGCCCTTCTACTGGTTGTTGTTGCTGTTGCTGTTGTTCCTGA

Coding sequence (CDS)

ATGGTACAAGATCACGTGGGTTGTGTGCATTTGGTTGGATTGAAGTTTATCCCTAGATGCTTGGAGGTGAAGCTTCTTGAAGCTATGACGATATGCTTTGGACTTGAGAACCTATCTTCCATCTATGTTTTGAATATCTTGGTTGAGTCTAATTATTTAGAGGTCATCAATTTGTTGAACGATGGTGCTGTTGATTTGACTGAATTCTCCTTCCTTATCGAGGAGACAAAGAATAGAGGCGATGAGTTGAGGGATCGTTCCTCCACGGCCGAAATTAGAATCAACCTGTCGTCGTCCGTCCTTCGCTCGCTTTCTCCTCCTCCTCTTCTTCTCTCTCTCGGGACCTCCATTTCTGAGGAAAATTTTATAGTTTCAGGTTTTTTTCTTGTTGTTTCTGGGATTTCCATGGAAGTTTCGTTATGTTCAATGCTACCAACATTCAAGCTCTGCCCTTCTACTGGTTGTTGTTGCTGTTGCTGTTGTTCCTGA

Protein sequence

MVQDHVGCVHLVGLKFIPRCLEVKLLEAMTICFGLENLSSIYVLNILVESNYLEVINLLNDGAVDLTEFSFLIEETKNRGDELRDRSSTAEIRINLSSSVLRSLSPPPLLLSLGTSISEENFIVSGFFLVVSGISMEVSLCSMLPTFKLCPSTGCCCCCCCS
Homology
[Close]
BLAST of Clc05G12130 vs. NCBI nr
Match: XP_038886170.1 (uncharacterized protein LOC120076417 [Benincasa hispida])

HSP 1 Score: 87.0 bits (214), Expect = 1.6e-13
Identity = 49/81 (60.49%), Postives = 60/81 (74.07%), Query Frame = 0 

Query: 4   DHVGCVHLVGLKFIPRCLEVKLLEAMTICFGLENLSSIYVLNILVESNYL-EVINLLNDG 63
           DH+  V + GLKF+ RC +V +LEA+ ICFGLE LSSI + NI+VES+ L EVINLLND 
Sbjct: 100 DHLYRVCMAGLKFVLRCQKVNILEAIAICFGLEILSSIDISNIMVESDCLEEVINLLNDD 159

Query: 64  AVDLTEFSFLIEETKNRGDEL 84
            VDL+E SF  EE K+RG  L
Sbjct: 160 VVDLSEVSFCSEEAKDRGGNL 180

[Close]
BLAST of Clc05G12130 vs. NCBI nr
Match: KAE8648586.1 (hypothetical protein Csa_008875 [Cucumis sativus])

HSP 1 Score: 65.5 bits (158), Expect = 4.9e-07
Identity = 30/44 (68.18%), Postives = 38/44 (86.36%), Query Frame = 0 

Query: 1  MVQDHVGCVHLVGLKFIPRCLEVKLLEAMTICFGLENLSSIYVL 45
          ++QDH G V LVG KF+ RC EV+LLEAMTICFGL+N+SSI++L
Sbjct: 16 VLQDHFGQVDLVGYKFVLRCREVRLLEAMTICFGLQNISSIHIL 59

The following BLAST results are available for this feature:
BLAST of Clc05G12130 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038886170.11.6e-1360.49uncharacterized protein LOC120076417 [Benincasa hispida][more]
KAE8648586.14.9e-0768.18hypothetical protein Csa_008875 [Cucumis sativus][more]
BLAST of Clc05G12130 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc05G12130 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc05G12130 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc05G12130.1Clc05G12130.1mRNA