Clc05G11560 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc05G11560
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	EKC/KEOPS complex, subunit Pcc1
Location	ClcChr05: 9405834 .. 9407698 (-)
RNA-Seq Expression	Clc05G11560
Synteny	Clc05G11560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTTTTCTTTATATTATTTATGAAAAGGCCGTGGAGCCGTTCTTTTAGGTTTTTCAGTTGAATTGAAACGATGGCTCCGACAGCTTCCGTCGCTTCTGATGGTGAGGCCAAATGGGAATTCAGCTGGTTGTTCTCTCTTTCTCTCTCTCTAAGCCCATAAGTGTATAATTACAAGTTTTCCTTTGATTGTATGGCATATGCTTTTAAATCGATTTGTTCGTAGATGTTGCTGTGTTAGCACTTGGGTTAGCTTTGCCTCTTTAGCTTTATCGTAATTCTCTTGTGATTAATTCGTTTTGTTCTTTCTCTGCTTCACTGCAATTTCCACAAACAAAATACGACAACGATGATGATCATCATCGGCATGTTCTTGCTCTTGGCAACCCTTTCTCTTTTACCCTGAAAGTTCAATTCTTTGTTTCTGAATCGTCCAGAGTTTCTGACTAGAGTTGTGTCTCGCAAAATCTCACTGTTGAAAGTTCAATTATTTAGTGCTTTGGATGTCAATGCACGGGTCTTGATTTATGTTATTTACGATTTTGGTCTCAATTTAGATAAGTGTGCTATATAAACTCTTTGAGAGGTGCCTTTTAATTTGTGATATGATATTACACTTTAATAATAAAATTGTTCTCTCCCTCTGTCTACAGACATAGTTAACATATAGTTAGTGAAACGTGTAAATTTTCGTGTTGATTTCTAGAATGTTTACATTTTCCATTTTCTTTAGTTGTTGATTTCATAACACTCACTTGTGTCATTGACTTCTTAATTGTTGGAATGGAATGGACCTTTTTAACTAGCTAAAGCTCTATTCTTTTGCTGTGGTTTTTGGAAGCCAAAGTTGTTTTTTATTTTTTAGTTTTGTCAGCGCTCAACAATGGTCATTGTAGTTGCTTCTTTCTTTAGATGAGCAACAACTGTGTTGGATCATACGTTGGAAACATGCAGTTCAACTCATTGTTTCATCTATTCTAGATTGGCTTTGTAGAGACAGGACAAGATATTTGCTTCTTTTTCCAAGTGTTGAATCTGGTTTGCTCTCTGCAGTGAATTTGAAGTCAATTATGAGTCTGCGAAGAAAGCTTCAATTGTCTATAATGCTTTAATCATCGATAAAGAGGTGCTTCTCGATGATACCCAACTTCACATTGTTTCTCCAAAGTTAACTTGTTTCTGATTTGATTTCTGTGCTAAGTACAGTTGCAGCCAGACAAGGTGAAAAGGGTGATGTCAGTTTCTGATGGAAAACTTTCAATGTGAGCCTCTTCTGCTACTTGCATTCCTAGTTTTTAATCTACTTTAGTTTGATACAGAATTCTTTAGAGCATTAGTAATGCTATTGCATTCTTAATTCTCTACAATCATATTTTGTAGACACTTTGAAGCAGTGGAAGCAAGGTTTTTGCGTGCATCATTCAGTGCATTTATTGATGTGCTTACTCTTGCCACAAAAACAATCGAAGAATTCGGACAAGAATTGGATTTCTGATAGCCTTACTGCTCTATTTACATGCCTCTCAAATATCAAGTGTCATTTTTTGCTTAAAGCAGCTGTGATTTTAACTCTACATCTGACCTGTAATTTATCACAATGTTTTGTCGTTGTTTGATCAAGTGCAAAGGTTTTTCTGCACCCGTCATTCGAACATTGAGATCTAACAAGATAACATTTTCAATACACATATTGTCCTATATTACTCCTTACATTCGGCCATATAACTACTTGATATGTTATTTTTATGTCGAATTCGAATTCAGTTTTAAGTGTTACCGACATGGTTAAATATACAAAAAGATTAGTAAAATTTGTGTGGATGCTTTTGTTCTTTTACCTTAATATTGGAAAGCCTTTATATATGTG

mRNA sequence

TTTTTTTCTTTATATTATTTATGAAAAGGCCGTGGAGCCGTTCTTTTAGGTTTTTCAGTTGAATTGAAACGATGGCTCCGACAGCTTCCGTCGCTTCTGATGGTGAGGCCAAATGGGAATTCAGCTGTGAATTTGAAGTCAATTATGAGTCTGCGAAGAAAGCTTCAATTGTCTATAATGCTTTAATCATCGATAAAGAGTTGCAGCCAGACAAGGTGAAAAGGGTGATGTCAGTTTCTGATGGAAAACTTTCAATACACTTTGAAGCAGTGGAAGCAAGGTTTTTGCGTGCATCATTCAGTGCATTTATTGATGTGCTTACTCTTGCCACAAAAACAATCGAAGAATTCGGACAAGAATTGGATTTCTGATAGCCTTACTGCTCTATTTACATGCCTCTCAAATATCAAGTGTCATTTTTTGCTTAAAGCAGCTGTGATTTTAACTCTACATCTGACCTGTAATTTATCACAATGTTTTGTCGTTGTTTGATCAAGTGCAAAGGTTTTTCTGCACCCGTCATTCGAACATTGAGATCTAACAAGATAACATTTTCAATACACATATTGTCCTATATTACTCCTTACATTCGGCCATATAACTACTTGATATGTTATTTTTATGTCGAATTCGAATTCAGTTTTAAGTGTTACCGACATGGTTAAATATACAAAAAGATTAGTAAAATTTGTGTGGATGCTTTTGTTCTTTTACCTTAATATTGGAAAGCCTTTATATATGTG

Coding sequence (CDS)

ATGGCTCCGACAGCTTCCGTCGCTTCTGATGGTGAGGCCAAATGGGAATTCAGCTGTGAATTTGAAGTCAATTATGAGTCTGCGAAGAAAGCTTCAATTGTCTATAATGCTTTAATCATCGATAAAGAGTTGCAGCCAGACAAGGTGAAAAGGGTGATGTCAGTTTCTGATGGAAAACTTTCAATACACTTTGAAGCAGTGGAAGCAAGGTTTTTGCGTGCATCATTCAGTGCATTTATTGATGTGCTTACTCTTGCCACAAAAACAATCGAAGAATTCGGACAAGAATTGGATTTCTGA

Protein sequence

MAPTASVASDGEAKWEFSCEFEVNYESAKKASIVYNALIIDKELQPDKVKRVMSVSDGKLSIHFEAVEARFLRASFSAFIDVLTLATKTIEEFGQELDF

Homology

[Close]

BLAST of Clc05G11560 vs. NCBI nr
Match: XP_038895564.1 (uncharacterized protein LOC120083771 [Benincasa hispida])

HSP 1 Score: 183.7 bits (465), Expect = 7.6e-43
Identity = 91/99 (91.92%), Postives = 98/99 (98.99%), Query Frame = 0


Query: 1   MAPTASVASDGEAKWEFSCEFEVNYESAKKASIVYNALIIDKELQPDKVKRVMSVSDGKL 60
           MAPTASVASDGEAKWEFSC+FEV+YES KKASIVYNALI+DKELQPDKVKRVMSVSDGKL
Sbjct: 1   MAPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIVDKELQPDKVKRVMSVSDGKL 60

Query: 61  SIHFEAVEARFLRASFSAFIDVLTLATKTIEEFGQELDF 100
           SIHFEAVEARFLRASFSAF+DVLTLATKT+E+FGQE+DF
Sbjct: 61  SIHFEAVEARFLRASFSAFVDVLTLATKTVEDFGQEVDF 99

[Close]

BLAST of Clc05G11560 vs. NCBI nr
Match: XP_008466840.1 (PREDICTED: uncharacterized protein LOC103504146 [Cucumis melo] >XP_008466841.1 PREDICTED: uncharacterized protein LOC103504146 [Cucumis melo] >KAA0050520.1 EKC/KEOPS complex, subunit Pcc1 [Cucumis melo var. makuwa] >TYK11292.1 EKC/KEOPS complex, subunit Pcc1 [Cucumis melo var. makuwa])

HSP 1 Score: 173.3 bits (438), Expect = 1.0e-39
Identity = 85/99 (85.86%), Postives = 95/99 (95.96%), Query Frame = 0


Query: 1   MAPTASVASDGEAKWEFSCEFEVNYESAKKASIVYNALIIDKELQPDKVKRVMSVSDGKL 60
           M PTASVASDGEAKWEFSC+FEV+YES KKASIVYNALI+DKELQPDKVKR MS+S+GKL
Sbjct: 1   MTPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIVDKELQPDKVKRAMSISNGKL 60

Query: 61  SIHFEAVEARFLRASFSAFIDVLTLATKTIEEFGQELDF 100
           SIHFEAVEARFLRASFS+F+DVLTLATKTIE+FG E++F
Sbjct: 61  SIHFEAVEARFLRASFSSFVDVLTLATKTIEDFGLEVEF 99

[Close]

BLAST of Clc05G11560 vs. NCBI nr
Match: XP_022141079.1 (uncharacterized protein LOC111011564 [Momordica charantia])

HSP 1 Score: 172.9 bits (437), Expect = 1.3e-39
Identity = 86/98 (87.76%), Postives = 93/98 (94.90%), Query Frame = 0


Query: 1   MAPTASVASDGEAKWEFSCEFEVNYESAKKASIVYNALIIDKELQPDKVKRVMSVSDGKL 60
           MAPTASVASDGEAKWEF C+FEV+YES KKASIVYNAL +DKELQPDKVKR M+VSDGKL
Sbjct: 24  MAPTASVASDGEAKWEFRCDFEVDYESEKKASIVYNALAVDKELQPDKVKREMAVSDGKL 83

Query: 61  SIHFEAVEARFLRASFSAFIDVLTLATKTIEEFGQELD 99
           S+HFEAVEARFLRASFSAF+DVLTLATKTIE+FGQ LD
Sbjct: 84  SVHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQGLD 121

[Close]

BLAST of Clc05G11560 vs. NCBI nr
Match: XP_004146228.1 (uncharacterized protein LOC101217139 [Cucumis sativus] >KAE8650547.1 hypothetical protein Csa_010241 [Cucumis sativus])

HSP 1 Score: 169.5 bits (428), Expect = 1.5e-38
Identity = 85/99 (85.86%), Postives = 91/99 (91.92%), Query Frame = 0


Query: 1   MAPTASVASDGEAKWEFSCEFEVNYESAKKASIVYNALIIDKELQPDKVKRVMSVSDGKL 60
           M PTASVAS GE KWEFSC+FEV+YES KKASIVY AL++DKELQPDKVKR MS SDGKL
Sbjct: 1   MTPTASVASHGEPKWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKRAMSNSDGKL 60

Query: 61  SIHFEAVEARFLRASFSAFIDVLTLATKTIEEFGQELDF 100
           SIHFEAVEARFLRASFSAF+DVLTLATKTIE+FGQE DF
Sbjct: 61  SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEEDF 99

[Close]

BLAST of Clc05G11560 vs. NCBI nr
Match: XP_022945934.1 (uncharacterized protein LOC111450028 [Cucurbita moschata] >XP_023541072.1 uncharacterized protein LOC111801345 isoform X1 [Cucurbita pepo subsp. pepo] >KAG6574248.1 hypothetical protein SDJN03_28135, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013317.1 hypothetical protein SDJN02_26076 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 168.3 bits (425), Expect = 3.3e-38
Identity = 83/99 (83.84%), Postives = 93/99 (93.94%), Query Frame = 0


Query: 1   MAPTASVASDGEAKWEFSCEFEVNYESAKKASIVYNALIIDKELQPDKVKRVMSVSDGKL 60
           MAPTASV SDG+AKWEFSC+FEV+ ES KKASIVYNAL++DKELQPDKVKR M+VSDGKL
Sbjct: 1   MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKL 60

Query: 61  SIHFEAVEARFLRASFSAFIDVLTLATKTIEEFGQELDF 100
           S+HFEAVEARFLRAS+SAF+DVLTLA KTIE+FGQ LDF
Sbjct: 61  SVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQGLDF 99

[Close]

BLAST of Clc05G11560 vs. ExPASy TrEMBL
Match: A0A1S3CTG0 (uncharacterized protein LOC103504146 OS=Cucumis melo OX=3656 GN=LOC103504146 PE=3 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 5.0e-40
Identity = 85/99 (85.86%), Postives = 95/99 (95.96%), Query Frame = 0


Query: 1   MAPTASVASDGEAKWEFSCEFEVNYESAKKASIVYNALIIDKELQPDKVKRVMSVSDGKL 60
           M PTASVASDGEAKWEFSC+FEV+YES KKASIVYNALI+DKELQPDKVKR MS+S+GKL
Sbjct: 1   MTPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIVDKELQPDKVKRAMSISNGKL 60

Query: 61  SIHFEAVEARFLRASFSAFIDVLTLATKTIEEFGQELDF 100
           SIHFEAVEARFLRASFS+F+DVLTLATKTIE+FG E++F
Sbjct: 61  SIHFEAVEARFLRASFSSFVDVLTLATKTIEDFGLEVEF 99

[Close]

BLAST of Clc05G11560 vs. ExPASy TrEMBL
Match: A0A5D3CJ23 (EKC/KEOPS complex, subunit Pcc1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G001520 PE=3 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 5.0e-40
Identity = 85/99 (85.86%), Postives = 95/99 (95.96%), Query Frame = 0


Query: 1   MAPTASVASDGEAKWEFSCEFEVNYESAKKASIVYNALIIDKELQPDKVKRVMSVSDGKL 60
           M PTASVASDGEAKWEFSC+FEV+YES KKASIVYNALI+DKELQPDKVKR MS+S+GKL
Sbjct: 1   MTPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIVDKELQPDKVKRAMSISNGKL 60

Query: 61  SIHFEAVEARFLRASFSAFIDVLTLATKTIEEFGQELDF 100
           SIHFEAVEARFLRASFS+F+DVLTLATKTIE+FG E++F
Sbjct: 61  SIHFEAVEARFLRASFSSFVDVLTLATKTIEDFGLEVEF 99

[Close]

BLAST of Clc05G11560 vs. ExPASy TrEMBL
Match: A0A6J1CHJ5 (uncharacterized protein LOC111011564 OS=Momordica charantia OX=3673 GN=LOC111011564 PE=3 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 6.5e-40
Identity = 86/98 (87.76%), Postives = 93/98 (94.90%), Query Frame = 0


Query: 1   MAPTASVASDGEAKWEFSCEFEVNYESAKKASIVYNALIIDKELQPDKVKRVMSVSDGKL 60
           MAPTASVASDGEAKWEF C+FEV+YES KKASIVYNAL +DKELQPDKVKR M+VSDGKL
Sbjct: 24  MAPTASVASDGEAKWEFRCDFEVDYESEKKASIVYNALAVDKELQPDKVKREMAVSDGKL 83

Query: 61  SIHFEAVEARFLRASFSAFIDVLTLATKTIEEFGQELD 99
           S+HFEAVEARFLRASFSAF+DVLTLATKTIE+FGQ LD
Sbjct: 84  SVHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQGLD 121

[Close]

BLAST of Clc05G11560 vs. ExPASy TrEMBL
Match: A0A0A0L7A2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G238730 PE=3 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 7.2e-39
Identity = 85/99 (85.86%), Postives = 91/99 (91.92%), Query Frame = 0


Query: 1   MAPTASVASDGEAKWEFSCEFEVNYESAKKASIVYNALIIDKELQPDKVKRVMSVSDGKL 60
           M PTASVAS GE KWEFSC+FEV+YES KKASIVY AL++DKELQPDKVKR MS SDGKL
Sbjct: 59  MTPTASVASHGEPKWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKRAMSNSDGKL 118

Query: 61  SIHFEAVEARFLRASFSAFIDVLTLATKTIEEFGQELDF 100
           SIHFEAVEARFLRASFSAF+DVLTLATKTIE+FGQE DF
Sbjct: 119 SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEEDF 157

[Close]

BLAST of Clc05G11560 vs. ExPASy TrEMBL
Match: A0A6J1G2C3 (uncharacterized protein LOC111450028 OS=Cucurbita moschata OX=3662 GN=LOC111450028 PE=3 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.6e-38
Identity = 83/99 (83.84%), Postives = 93/99 (93.94%), Query Frame = 0


Query: 1   MAPTASVASDGEAKWEFSCEFEVNYESAKKASIVYNALIIDKELQPDKVKRVMSVSDGKL 60
           MAPTASV SDG+AKWEFSC+FEV+ ES KKASIVYNAL++DKELQPDKVKR M+VSDGKL
Sbjct: 1   MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKL 60

Query: 61  SIHFEAVEARFLRASFSAFIDVLTLATKTIEEFGQELDF 100
           S+HFEAVEARFLRAS+SAF+DVLTLA KTIE+FGQ LDF
Sbjct: 61  SVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQGLDF 99

[Close]

BLAST of Clc05G11560 vs. TAIR 10
Match: AT5G53045.1 (unknown protein; Has 122 Blast hits to 122 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 46; Fungi - 30; Plants - 41; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). )

HSP 1 Score: 126.7 bits (317), Expect = 1.0e-29
Identity = 60/96 (62.50%), Postives = 77/96 (80.21%), Query Frame = 0


Query: 1  MAPTASVASDGEAKWEFSCEFEVNYESAKKASIVYNALIIDKELQPDKVKRVMSVSDGKL 60
          MA T    +  +  W+FSC  +V++ES + A I Y +L +DKELQPDKV+RVMSVS+ KL
Sbjct: 1  MAATVPATTRSDQTWDFSCNLDVSFESEEHALIAYTSLAVDKELQPDKVRRVMSVSNNKL 60

Query: 61 SIHFEAVEARFLRASFSAFIDVLTLATKTIEEFGQE 97
          S+HFEA+EAR LRASFSAF+DVLTLAT+TI+EFGQ+
Sbjct: 61 SVHFEAIEARLLRASFSAFVDVLTLATRTIQEFGQK 96

The following BLAST results are available for this feature:

BLAST of Clc05G11560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038895564.1	7.6e-43	91.92	uncharacterized protein LOC120083771 [Benincasa hispida]	[more]
XP_008466840.1	1.0e-39	85.86	PREDICTED: uncharacterized protein LOC103504146 [Cucumis melo] >XP_008466841.1 P...	[more]
XP_022141079.1	1.3e-39	87.76	uncharacterized protein LOC111011564 [Momordica charantia]	[more]
XP_004146228.1	1.5e-38	85.86	uncharacterized protein LOC101217139 [Cucumis sativus] >KAE8650547.1 hypothetica...	[more]
XP_022945934.1	3.3e-38	83.84	uncharacterized protein LOC111450028 [Cucurbita moschata] >XP_023541072.1 unchar...	[more]

BLAST of Clc05G11560 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc05G11560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CTG0	5.0e-40	85.86	uncharacterized protein LOC103504146 OS=Cucumis melo OX=3656 GN=LOC103504146 PE=...	[more]
A0A5D3CJ23	5.0e-40	85.86	EKC/KEOPS complex, subunit Pcc1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A6J1CHJ5	6.5e-40	87.76	uncharacterized protein LOC111011564 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A0A0L7A2	7.2e-39	85.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G238730 PE=3 SV=1	[more]
A0A6J1G2C3	1.6e-38	83.84	uncharacterized protein LOC111450028 OS=Cucurbita moschata OX=3662 GN=LOC1114500...	[more]

BLAST of Clc05G11560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G53045.1	1.0e-29	62.50	unknown protein; Has 122 Blast hits to 122 proteins in 57 species: Archae - 0; B...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015419	CTAG/Pcc1 family	PFAM	PF09341	Pcc1	coord: 18..91 e-value: 1.1E-17 score: 63.9
IPR015419	CTAG/Pcc1 family	PANTHER	PTHR31283	EKC/KEOPS COMPLEX SUBUNIT PCC1 FAMILY MEMBER	coord: 1..95
None	No IPR available	GENE3D	3.30.310.50		coord: 7..98 e-value: 4.8E-23 score: 82.9
None	No IPR available	PANTHER	PTHR31283:SF18	BNAA10G06410D PROTEIN	coord: 1..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc05G11560.1	Clc05G11560.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0070525	tRNA threonylcarbamoyladenosine metabolic process
cellular_component	GO:0000408	EKC/KEOPS complex