Clc05G11390 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc05G11390
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	splicing factor SF3a60 homolog
Location	ClcChr05: 9209640 .. 9218883 (+)
RNA-Seq Expression	Clc05G11390
Synteny	Clc05G11390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGAGATGTCAAAAGGAAGAGGCAGCCCCAAAAATTGAAAAGCGAAATATCGAGGGCCATTTTTCAGAGGCAGCTTCTACAATACAAACTCTGGGGCGAAGCTGAAGCTGAAGCTGATAGCGAGGGAGTGAGGTTGGTGAGTTAACATGTCGTCTACGCTGCTAGAGGTGACCCGCGCCTCACACGAGGAGGTGGAGCGACTCGAGCGGCTTATAGTGAAGGAGCTTCAAAATGAACCTGCTTCCGGCAAGGACCGTTTGCTACAGAGTCACCGAGTCCGCAATATGATTGACACCATCATGTCCACCACCGACAAACTCGTACTTTCCTCTCTCTATACTCCATATTTTCTCTGATTTCTCACAGCTGGTGTTCAATATTTGAGCACCTAATGGGGCATTGAAGTTTTAGGTTTTACCTCTCATTTGGTGGAATTTTGTGTTCTCCCAGTATTTAGGACGTGTGCATTTGAATTTACAGATTTTCCATTGGCAACCAACTTGTTGAATTTGGTTTCGGGGCATTTGGGAAGAGATGGAATTTCTTCAATTAGTAAACTTTACTGTGATTGTGAAAGTTCATGCATAAATTTTCATTTCGCTTTAAAAGAATTAACTATCCCTTCACTATTAGAGAAGTTAGGATATGAAATGTAGTGGAGTGTATACAGTACAAATTAAAGTTTGGTTCAATTAGGAAGCTTGGTGATGGAAGATTGGGCGATTTTCTTTGAATTGGGAAAAATGACTTTTACAAAATTCCTTATGTGAATAAATTTTCTGATTAGCTAGGCGGGTTATTTTGTCTGATTTTTGCTGGTACCCTCATGTTATCGTTGCTCCATGATATGCTTTTCTTTGATCTGGACTGAACTCTTCTCTACCCTCTCCCCGCCATTATTGCTTTTGTGTGCAGGTTGATGTTTATGAAGATAAGGATAGCGCCAGGAAAGATGAGATTGCGGCACTTGGAGGGCAAACAACTTCAGGAACCAACGTTTTTAGTGCATTTTATGATAGACTGAAGGAGGTTATTGGCAATATATCATTATACTGTTGTCTATCCATTTTAGAATTAATGTACATCTTCCATATGAAAGTTGATGAGTGAATATGGAAAAAAGAGGTGGAGTTCAAGTACAGCATTCTGTTATTTATTCATCTTAATAAGAGACAAATTTCATTCACAACATGAAATATAAGAAAAAAGTTGGTCATTGCGAGGGAAGCAAAAAGTGGAGGTTTATTAGAATAATTACAAAATAGGCTGTAATTTTTGCACCAAGTGGTTACTATAGTTTCTCCCAAGAAGCGTCTAAAGAAATTTCTTTGCCTAAGAAAACCCTACTACTTTTTTTCAAGCCATATAGACAAGAAATACTCTAACAAAAGTGGCCACAAAAATTTGACCTCCTTCTTAAATGGGTGCCCATCCAAAATGAGAGTAGGGATGCCTTTGAGGCTGTTTGGAGTGGAGTTGCTCAATTGAAGTTGCTGAAGATAGTTTTCTACAATTATAGGCATAAGGGATTTTCTACAAATTATTAGGCATAATGGCTAGTGAAGAGATGGCATTGAGAAATTACTTTTACATGGCGTTTAGATTTTTGGCTTCCTTTGAGGCCGTTGGGAGGCCAACTTCTTGGCGTGTCATGTAGAAGAAGTTTTTGTCAATCTCTTCTATGGGGGTTTAATACCAACTTTGGCATTTTGAGGAGGGAAATGTAGTAAGTTGGGAGGTTCAAAGGAATGGGTCGATTGAGAGAAAGTCTACTGCCAACCTTTCTTGGAGTGGGATGTTGTTTTCCCTTTCAAGCTTGCAAGTATGAAGTGTTTGATGGTATTGCTTCTTTCAGGAGTTTGATATTGTGCTAGCTTGCCAGAGGGATATTCGTTCAATGTTTGGGTAGTTCCTCTTCGATGCGCCTTTCAAAGGGAAAGGGCATTTTTTGTAGTTAGTGAGGGTGTGTGTCCTGTTGTTGGATCCTTGGGGGGAGAAGAGCAATAGAGTGTTTATAGGTGTGGATAGGGACCCTAATGAAGTTTTGTCTCTGGTAAGGTTCCATGTTTCTCTTTGGGCTTCGGTTTCGAAGACTTTTTTTTAATTATTCCTTAGGTAATATCTTACTTAGTTGGAAACCCTTTCTCTAGTGGGTTTTTGCGGGCTTTATTTTGTGTATGCCTTTGTATTCTTTCATTTTTTCTAAATGAAAGCAATTGTAAATAATTAAAAAAAACCTTGCAAGTATGAAGTTTCAAAAGGAGGCTTTTTGTGAGGGTGGTTGCAGAGAAGTAAGCCAAGGTGGGAAGAGGGTCCTTCTTCTACAATAATGTTAATGTAGGTAACAATTGATGTAAGGCATTTTTTGGACAATTTATGTTGAGGTGATTGGTTTTGGAAACGTCAGAGTTTGGACCCAAGGCTTTGTTAATCTCTTTGATAATTAGTGCCTGATGCCCTCAGCTTGTAGGGTGTTTAAGGAGATGGAGGAGTCACCTGACCACGTGCCCCTCCACTATGACTTTGCCGGTTAATCTTTGAATTATTTGGTGGGGACTTTGGGCATTTTGTTTTGCCTCCCTAAGAAAGTGCATGACTGGCTCATGGAGATTCATGCGTGAAATTTGAGAGGGAAAGCCAAGATTGTTGGTGGTTGTGCCTTTAGAGCTCTTTTATGGCCCATTTGGAAAGGAAGAAATGTGCACTCCTTCAAAGATAATCCCTCTAGTTTTGGAATTTTTTTATGACATCTTGGTGGATTTCTTTACATACAAAAGTTTTAATTACTTGGCAGGGACTTTGGGTATTTCGTTTTCTTGATGATTATCAAAGATTGGAAGGCTCTCATGATGTAGTTTCTTTTGGGGGGGTGGGGCTAGGCTGTCTTTGCTTCTTAGGATTTAGGAATGATAAACTTGGACAGCATGGACTCCCACAAAGTGACCTAACATACCCTTCTTGAAAGCCTCAAGAGAGGAGCCTAGCCTACTAAAGCAATCTGTTGTTAATAATAAAAGACAAAAGGAGAACCTACCTGTACCTTTAGAAACCAAGATTTTCCTCTTTGGTTGCATGGCTAATGATAGAGAAGTTTGTTTTTGAGATGCAAGTAAAATTCTATTCCCACATTTCTTACCAAAGCCTTTTCTTTCATAATTGCCAGTAGGAAGTTTCTATTTGACTTTGTTGAAAGCTTCTTCTGCTTTTAGCTTGAAGACAAGACTCTTTCTTTGTTTCTTTTTTTTTCCCCAGCTTTTGACTAGTCAACAACAAGCTAATTGGTTCTTGTCTCCTTAGTACTCAAGGACACAGTTGTACAACCTATAGAACAAATCTTGTTCAAGTAAGATCGTTCATTAACAAGCTAAATTGCTTCATTCTTGCCTTTCCTACCTCATATTTTCTATGAACTCGTTTCTTGTTAAAAAGAAAAACAAACCAGGCTCATTTTTGTTGATTTGGATGTGATGATACCATCACTAACATCTTGAATCACCATTTCACCATTTCACTATGAAGTGTGTATGGGTGAAGCTAGGTCTTGTGGACGACCAACTGAACAGTTCATTCATGTTCCTATTCTTGCTTCAACTGCAGAGATTGTTTCTTAGAAACTTAGTAAATACAATACTCGAGTAAATGAGAAAAATATTATTTTTTGTTCACAGGTAATCTGAATTATTATTTCAAAGTTATCCACTGCTCTGTATCAAGTCCAATTACTATGTGTGCAGATTCGTGAATACCATAGAAGGCATCCAGCTGCACGTGTTGTTGATGTTAATGAGGATGACGGCCTGCTGAAAGAGGAGCCACAAATTGAGTTCAGTGGAGAGGTCGATTTCTTCTTATGTCTTGAAGTTGCATATAATTGCTTGACCCAGCTTTTCATAAAATTGATTGATTGCCTCATTGCCTATCCATGTATGAAAAGTTCTCATGCTCCACATCTGATCATGAAAACAATTCTCATGCTTGTATTTTCATATTTTTATGGTGTTGTGATTGGTTTTGACTTTTTGAGTAGGAGACACAACATTCTTTTCAGATTAGGGTATTTTCTATTGCTAGTGATAGGCAGCACCAGTTTTTGATATTAATGCATTTTACAAATTTGCCACATCTGGATGAAGGTAAGTAATCCGCCCTCAAGAATTTATTTGGTCATAATAACTAAGAGGTTTTTTCTTTTTCTTTCTTTTTTCTTTTTTTCTTTTTCTTTTTAAATTTTTTTTTTAATACCATTAGGCCTTATTCTTGCCCTTTCTTTTAAAATAGTTTTTGGCTAGGCTCATTTTTTTGGGCTGCCGTTTGTGTGGGCCAGACTCTTTTTGGTCCGTGTTTTTTGTTTGGCCATTTTTCTTGGTTCTCTTGTAATCTTTCAAATTGGCAAAGGCATACACATTTTTGAATCCAATAGTAAATGTTATACCAGTAATATCTCTATTCTTTTCTCTACTAGCTTTTGTTTGGCAAGGTGCTGCAAGCTTTTGTTAAGACTTTTAATATTGTCCGAGATAATTCATGAAAGCTTGGTTTCTTCATTAGAAAAAAGGCTTTTTGTTATGAAGAAGTTTTATAATTAATTGCTTAGCCTAGCCTTAAACCCCCTTTGATATTTTCTATAAGAATAAATTCCAGTCTTGATTAAGCAATGCTTGTATACGGGCTTGTGTTGACCAGTGGGGAACATTTGGAGACAGTTCCCTTGTGGTGGGTTAGGTAGAAGATTGTTGGTTTAAATCTTGTTTTGGTTCCTAAATTTCGATATTAATTTTATTTTTATTCTTTTACATTTAAATGTTTTTCTTAAGGCCCTTTCTTGAACTTCAAGTAAAACTCTTCTTTGTTCCTTTCTCGCTTTCACAGTTCATTTACCACAAATTTTATATGCATTATGTGGAATTCCCTTCTAATGTAAACATATAAGTTCAGTATCAAATTTGAAAAGTAGGTGCTGTATGGTTTGTGTTAAATATAACACAAAAATTCGAGAACAAGAAGTAAAACGAGTAGTTACAAATTTTGAGGATAAAAACAATATAAATGTAAACTTCCAACTCTATGTGTAAGATGTGTGTTACTCTGTATGTGTATATATATTTCCTGTTTCAGTTATTGACTTGTCTATGTTTTAGGAAGCATTTGGACGGTATCTTGACTTGCACGAACTATACAACCAATATATTAATTCAAAATTTGGAGAGGCCATAGAGTACTCTTCATACCTGGATGTTTTTTCACAACCCCAGAAAATCTCTCGGAAACTAAAGGTTTCAAGGTAAACAGATCAATTTTCTTCCTCAAATATTATCATACCGTTGGTTAATGATTTATTTTAAAGTGAATGAATGGTGTCTCATTTTGAGTTCTAATATTTACTTTATATACAGACAATACAGGGAATACTTGGAGAATCTTCTTGCTTATCTCATTTATTTTTTCCAGCGTACAGAGCCCTTGCAAGATCTTGATCGGATATTCTCAAAGGTTGCTTTACGATACTTTTCTCTCCTAATTTTAACATTCAATTTTCAATTATGCTTTATGCTGCCTTACTTCTTGGAACTATATCTTAATAGGCTGGGTCGCTATGGTTTTTTTTTGCATGTGGCAACTTTAATCATTTGAAAGCATTGTTTGTAAATTAGCTATAGTATGCATGTTTGTATAGGACTTTAAGCTTGCATCCTTCCGTTCGTGATTTTGATTATGAGGGTGTTTTGATAGGTTGAATCTGAATTTGAAGAGCGTTGGACTATTGGTTCAATTGAAGGATGGGAGAACACTGGTCAAGAAAATGGTCATGATTCCGGTCCGCATAGTCTTATTGATCTTGACTATTATAGCACAGTGGAAGAGCTGGTAGAACTAGGTCCTGAAAGGTTAAAGGAGGTAAGAAGTGATTTGTGATGCCATATTAGCCTAGAATTACTGTATTGCCTCTTTCTTTTTCTTTGTTCTTACTCGGTTGTTATGTCACTTTATGGCAGGGGTTGGCGGCATTGGGACTGAAGACTGGTGGTACAGTTCAGCAGCGTGCAGAGAGGCTTTTCCTCACTAAGGTAGTAATTTACTGCCTTTTTGTCCAATAGGATGTCAGTTGTTGGGAACCTACAATAATTCAAGCATGCTAGTGCAGTTTATGTGCAGATCACTTCCTCCTTTACGAATATATTTTCTCGTGGTGAATGCATATCCTCATGTATCTCTCTGTGCCTATAAGACTCCCCCCCACATGTGTGTGTACGTATTTCTATTGAGGAATGGACTTTTTATGTCCCATATTGTGCTCTCAGTACAGCTGCTTGTCCTACTTTTACTTTCTACTTACTTTTCAATAAAACTTTGTTTCTTCTCTCTCTCTTCCTGTGGTCGTCTGTATGCTGGGATTTTCCCATATATTACTGCTGATCTAGTGTTTGGTTCCAGAACTAAACCCATCCCACTTTATGCTAGTTATGTTATATATGATAATAATGATAGGTAGAAGACACAACTTCGCCTTCTGACTTTCTGTGATGTCATATAATCTTACACCACCAGATTTTTTCAAGGAATTTTATTTGATTAATTTTACAGTTCATTTGACACCCCTTTTCTTTGCAGAATACGCCTCTTCAATTGTTGGACAAAAAACATTTTGCGAAACTGTCTCGGCAACCTATTCAAAATGGGGCAGCTGCGGCATCACAAAACAATGAAAACTTGAAACAAGTTGCCCTGATGGAGGCAAAAATTGAAAAATTGTGTGATCTTCTGGATGAGGTCAGGTTTTGAGGACGATCAAAATGCCCCTTTGATCGCCTGAACCTTCATAATTTATATTCTGAAGAAGAATAATTTCGGGACTTCTTAATTTATTTTGTTTATGGCCATTTTCAGACAATCGCTCGAACCAAAGACAACATTGTTAAGAAGCAGGCATTAACATATGAGGAAATTGAAGCAGAACGTGAGGAGGTGAGAGACTAGTATTACTAAACAAATGTTTTTACTAAAATATAACTTTTGGTATTCATTATTTCTGACATGGACCATATGGTTACCGTGTTTGCATCATCCACAAAAGCATTCCCTGCCTAAAGGTTGAAAAAGTGTTCTGTAAGTTGTGAATTTGATGTTGTGATCTAATATTTATATCAGAAACTTACTTAAACGTTTACATGGGCATCCAAACCTGGCTTACGGACTGATTTAACCTTAAATACCAGTTCACCAGATTTACTTTCTTCTTGTGAATGACTGTGCATTTGAAACGATGGTTTACTATATGGGTTCAAGATCTACTGTCTCTATGCAAGTGTGTTGATGCCCAGCTGGCAAGAAAATTGAGATTTTCAGAAACCGTGTATCAGTTGCTATAAAATGTTAATACTTAATAGCCTTTTGATATGGCAATTCTGGCAGGAGGAGACACAAGCTGAGTCTGAAAGTGATGATGAAGAGCAACAGATCTATAATCCACTCAAGCTCCCAATGGGTTGGGATGGGAAACCCATACCTTACTGGCTCTACAAGCTTCATGGCCTTGGTCAGGTAAATCATTCCCTCACCAACCAAAATCCTGTAGCATGGCAAAGAAAATATAGCATAGCCGCAAACCATCATGAGTTGTTCTAGTGGTCAAAAAGGGCCATGAATTTAATAAAAGCTATCTAAGATCTAATATTTTATGAGTTTTCTTTGCACCCAAATATTGTATGGTCAGACTGATTGTCCAGTGAGATTAGTTGAAGTGCGCACATACTGACTTGGACACTTGCAAATGTCAAAGAAAGGGGAACAAGAAAAAGAAGCATTTTCCACTTCTCCAAAAATGAATTCCTCTTCAAAAAGCATTCTTGTGTGGAATTGACCATATTTGCTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCTTTTCAAGCCAATATGCTAAAGGATGTGTGAAAGTGAAACATGATATACATTTGACTTCCATAACCTTCCTCTTGCCTAATCGCTAATCTCAAACAATTACATTTCAGAAGCCATGGTTGCACATTTGTTTCATAAATTGCAGCATATTGCTGTTGCTTTTGTTTTCAACTTATTGAAGTTCACGTGGAAAGATTTGCTTGAAAATGTGATAATTTTATGGTACAGGAATTTAAATGTGAGATATGTGGGAACTATAGTTACTGGGGTCGTAGAGCTTTTGAGCGACATTTCAAGGAATGGCGTCATCAGCATGGAATGCGTTGCCTTGGTATTCCAAATACAAAGAACTTTAACGAAATCACATCAATTGAGGTAAGTCTTTGCTCGTACTTTGATCTCCCCATTCCGTGAGTGTATTTGTTCTTTTTGTATAAGAAACATTTCATTGTTAGATTAAAGTGTACTGAAAAGGAAACACAACCAAGGTGGGTGCTTTACAAATATGTGCTCCAAGATGTCGCTAAGGAAAGTACTTAATTGTAAAGGGTAGAAACTAGAAAGGGTACACCAAGATGATCTGTCATTTCGATTACATTTTCAATAATAGACATTACCTTTCATTTTGATGTTGACCATCTTGATTTATCGACATGTCAAAAAGTTCAAGTCTATGGTCCGCTTAATAGTGAGAAATGCCTGCATGATTGCATATTTAATTAAATTATTTAGTGAGAATATCGTGGTCTCTTTATTCACTCTTCTGATCTTTCAGGAGGCAAAAGACTTGTGGAAAAGAATACAAGAACGACAAGGAGTTAACAAGTGGCGACCAGACCTGGAAGAAGAATACGAAGATAAGGAGGGTAACATTTACAATAAGAAGACATATACAGATCTCCAACGCCAGGGATTGATATAAGAATCACATTTATCATGGACATCTTTCTCTAGTAAGTTCCATCTGAATTTCTGTCTACTGAGATATGGAAGAATGATAAGATTTTATCCTTCTTTCGTTCTGAGATAGTAAATGAGTTCTAAATCTCTTTCAGGTTCCTATTATGGTTAGTCTTTGAAGTTTTGGAGGAAGCATTTAATCAAGTTGAATGAATAGAGATTATGAAGAGCTCGAGCAAATGTAATGCTTTTTTACAAGCTAAAATTTTGAGAAATCTTTTTCTATTCTAAGGTAGAAATGAGGTGATATTATGGTTGTGCTATTTGAAATATATGAAGTTCGCAATCCTTCTACTATCAACATCCTCAATGCCGCTGCTAATTTGTGCTGTTCTGACCTGTGGCTGTATGACACTTCAAAATTCAAGGATGCATGGTTTTAA

mRNA sequence

TTGAGATGTCAAAAGGAAGAGGCAGCCCCAAAAATTGAAAAGCGAAATATCGAGGGCCATTTTTCAGAGGCAGCTTCTACAATACAAACTCTGGGGCGAAGCTGAAGCTGAAGCTGATAGCGAGGGAGTGAGGTTGGTGAGTTAACATGTCGTCTACGCTGCTAGAGGTGACCCGCGCCTCACACGAGGAGGTGGAGCGACTCGAGCGGCTTATAGTGAAGGAGCTTCAAAATGAACCTGCTTCCGGCAAGGACCGTTTGCTACAGAGTCACCGAGTCCGCAATATGATTGACACCATCATGTCCACCACCGACAAACTCGTTGATGTTTATGAAGATAAGGATAGCGCCAGGAAAGATGAGATTGCGGCACTTGGAGGGCAAACAACTTCAGGAACCAACGTTTTTAGTGCATTTTATGATAGACTGAAGGAGATTCGTGAATACCATAGAAGGCATCCAGCTGCACGTGTTGTTGATGTTAATGAGGATGACGGCCTGCTGAAAGAGGAGCCACAAATTGAGTTCAGTGGAGAGGAAGCATTTGGACGGTATCTTGACTTGCACGAACTATACAACCAATATATTAATTCAAAATTTGGAGAGGCCATAGAGTACTCTTCATACCTGGATGTTTTTTCACAACCCCAGAAAATCTCTCGGAAACTAAAGGTTTCAAGACAATACAGGGAATACTTGGAGAATCTTCTTGCTTATCTCATTTATTTTTTCCAGCGTACAGAGCCCTTGCAAGATCTTGATCGGATATTCTCAAAGGTTGAATCTGAATTTGAAGAGCGTTGGACTATTGGTTCAATTGAAGGATGGGAGAACACTGGTCAAGAAAATGGTCATGATTCCGGTCCGCATAGTCTTATTGATCTTGACTATTATAGCACAGTGGAAGAGCTGGTAGAACTAGGTCCTGAAAGGTTAAAGGAGGGGTTGGCGGCATTGGGACTGAAGACTGGTGGTACAGTTCAGCAGCGTGCAGAGAGGCTTTTCCTCACTAAGAATACGCCTCTTCAATTGTTGGACAAAAAACATTTTGCGAAACTGTCTCGGCAACCTATTCAAAATGGGGCAGCTGCGGCATCACAAAACAATGAAAACTTGAAACAAGTTGCCCTGATGGAGGCAAAAATTGAAAAATTGTGTGATCTTCTGGATGAGACAATCGCTCGAACCAAAGACAACATTGTTAAGAAGCAGGCATTAACATATGAGGAAATTGAAGCAGAACGTGAGGAGGAGGAGACACAAGCTGAGTCTGAAAGTGATGATGAAGAGCAACAGATCTATAATCCACTCAAGCTCCCAATGGGTTGGGATGGGAAACCCATACCTTACTGGCTCTACAAGCTTCATGGCCTTGGTCAGGAATTTAAATGTGAGATATGTGGGAACTATAGTTACTGGGGTCGTAGAGCTTTTGAGCGACATTTCAAGGAATGGCGTCATCAGCATGGAATGCGTTGCCTTGGTATTCCAAATACAAAGAACTTTAACGAAATCACATCAATTGAGGAGGCAAAAGACTTGTGGAAAAGAATACAAGAACGACAAGGAGTTAACAAGTGGCGACCAGACCTGGAAGAAGAATACGAAGATAAGGAGGTTCGCAATCCTTCTACTATCAACATCCTCAATGCCGCTGCTAATTTGTGCTGTTCTGACCTGTGGCTGTATGACACTTCAAAATTCAAGGATGCATGGTTTTAA

Coding sequence (CDS)

ATGTCGTCTACGCTGCTAGAGGTGACCCGCGCCTCACACGAGGAGGTGGAGCGACTCGAGCGGCTTATAGTGAAGGAGCTTCAAAATGAACCTGCTTCCGGCAAGGACCGTTTGCTACAGAGTCACCGAGTCCGCAATATGATTGACACCATCATGTCCACCACCGACAAACTCGTTGATGTTTATGAAGATAAGGATAGCGCCAGGAAAGATGAGATTGCGGCACTTGGAGGGCAAACAACTTCAGGAACCAACGTTTTTAGTGCATTTTATGATAGACTGAAGGAGATTCGTGAATACCATAGAAGGCATCCAGCTGCACGTGTTGTTGATGTTAATGAGGATGACGGCCTGCTGAAAGAGGAGCCACAAATTGAGTTCAGTGGAGAGGAAGCATTTGGACGGTATCTTGACTTGCACGAACTATACAACCAATATATTAATTCAAAATTTGGAGAGGCCATAGAGTACTCTTCATACCTGGATGTTTTTTCACAACCCCAGAAAATCTCTCGGAAACTAAAGGTTTCAAGACAATACAGGGAATACTTGGAGAATCTTCTTGCTTATCTCATTTATTTTTTCCAGCGTACAGAGCCCTTGCAAGATCTTGATCGGATATTCTCAAAGGTTGAATCTGAATTTGAAGAGCGTTGGACTATTGGTTCAATTGAAGGATGGGAGAACACTGGTCAAGAAAATGGTCATGATTCCGGTCCGCATAGTCTTATTGATCTTGACTATTATAGCACAGTGGAAGAGCTGGTAGAACTAGGTCCTGAAAGGTTAAAGGAGGGGTTGGCGGCATTGGGACTGAAGACTGGTGGTACAGTTCAGCAGCGTGCAGAGAGGCTTTTCCTCACTAAGAATACGCCTCTTCAATTGTTGGACAAAAAACATTTTGCGAAACTGTCTCGGCAACCTATTCAAAATGGGGCAGCTGCGGCATCACAAAACAATGAAAACTTGAAACAAGTTGCCCTGATGGAGGCAAAAATTGAAAAATTGTGTGATCTTCTGGATGAGACAATCGCTCGAACCAAAGACAACATTGTTAAGAAGCAGGCATTAACATATGAGGAAATTGAAGCAGAACGTGAGGAGGAGGAGACACAAGCTGAGTCTGAAAGTGATGATGAAGAGCAACAGATCTATAATCCACTCAAGCTCCCAATGGGTTGGGATGGGAAACCCATACCTTACTGGCTCTACAAGCTTCATGGCCTTGGTCAGGAATTTAAATGTGAGATATGTGGGAACTATAGTTACTGGGGTCGTAGAGCTTTTGAGCGACATTTCAAGGAATGGCGTCATCAGCATGGAATGCGTTGCCTTGGTATTCCAAATACAAAGAACTTTAACGAAATCACATCAATTGAGGAGGCAAAAGACTTGTGGAAAAGAATACAAGAACGACAAGGAGTTAACAAGTGGCGACCAGACCTGGAAGAAGAATACGAAGATAAGGAGGTTCGCAATCCTTCTACTATCAACATCCTCAATGCCGCTGCTAATTTGTGCTGTTCTGACCTGTGGCTGTATGACACTTCAAAATTCAAGGATGCATGGTTTTAA

Protein sequence

MSSTLLEVTRASHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTDKLVDVYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEDDGLLKEEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDVFSQPQKISRKLKVSRQYREYLENLLAYLIYFFQRTEPLQDLDRIFSKVESEFEERWTIGSIEGWENTGQENGHDSGPHSLIDLDYYSTVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKNTPLQLLDKKHFAKLSRQPIQNGAAAASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYEEIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRPDLEEEYEDKEVRNPSTINILNAAANLCCSDLWLYDTSKFKDAWF

Homology

[Close]

BLAST of Clc05G11390 vs. NCBI nr
Match: XP_038875231.1 (splicing factor SF3a60 homolog [Benincasa hispida])

HSP 1 Score: 955.3 bits (2468), Expect = 2.2e-274
Identity = 479/490 (97.76%), Postives = 486/490 (99.18%), Query Frame = 0


Query: 1   MSSTLLEVTRASHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTDKLVD 60
           MSSTLLEVTRASHEEVERLERLIVKELQNEP S KDRLLQSHRVRNMIDTIMSTTDKLV+
Sbjct: 1   MSSTLLEVTRASHEEVERLERLIVKELQNEPTSAKDRLLQSHRVRNMIDTIMSTTDKLVE 60

Query: 61  VYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEDDGLLK 120
           +YEDKD+ARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEDDGLLK
Sbjct: 61  IYEDKDNARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEDDGLLK 120

Query: 121 EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDVFSQPQKISRKLKVSRQY 180
           EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDVFSQPQKISRKLK+SRQY
Sbjct: 121 EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDVFSQPQKISRKLKISRQY 180

Query: 181 REYLENLLAYLIYFFQRTEPLQDLDRIFSKVESEFEERWTIGSIEGWENTGQENGHDSGP 240
           REYLENLLAYLIYFFQRTEPLQDLDRIFSKVESEF+ERWTIG+IEGWENTGQENGHDS  
Sbjct: 181 REYLENLLAYLIYFFQRTEPLQDLDRIFSKVESEFDERWTIGTIEGWENTGQENGHDSAQ 240

Query: 241 HSLIDLDYYSTVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKNTPLQLLDKKH 300
           HSLIDLDYYSTVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTK+TPLQLLDKKH
Sbjct: 241 HSLIDLDYYSTVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH 300

Query: 301 FAKLSRQPIQNGAAAASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE 360
           FAKLSRQPIQNGAAAASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE
Sbjct: 301 FAKLSRQPIQNGAAAASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE 360

Query: 361 EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 420
           EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN
Sbjct: 361 EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 420

Query: 421 YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRP 480
           YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRP
Sbjct: 421 YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRP 480

Query: 481 DLEEEYEDKE 491
           DLEEEYEDKE
Sbjct: 481 DLEEEYEDKE 490

[Close]

BLAST of Clc05G11390 vs. NCBI nr
Match: TYK29174.1 (splicing factor 3A subunit 3 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 942.6 bits (2435), Expect = 1.5e-270
Identity = 471/490 (96.12%), Postives = 483/490 (98.57%), Query Frame = 0


Query: 1   MSSTLLEVTRASHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTDKLVD 60
           MSSTLLEVTR+SHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTT+KL++
Sbjct: 1   MSSTLLEVTRSSHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLIE 60

Query: 61  VYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEDDGLLK 120
           +YEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDV+EDDGLLK
Sbjct: 61  IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVSEDDGLLK 120

Query: 121 EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDVFSQPQKISRKLKVSRQY 180
           EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLD+FSQPQKIS+KLK SRQY
Sbjct: 121 EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDIFSQPQKISQKLKFSRQY 180

Query: 181 REYLENLLAYLIYFFQRTEPLQDLDRIFSKVESEFEERWTIGSIEGWENTGQENGHDSGP 240
           REYLENLLAYLIYFFQRTEPLQDLDRIFSKVESEFEERW IG+IEGWENT Q+NGHDS  
Sbjct: 181 REYLENLLAYLIYFFQRTEPLQDLDRIFSKVESEFEERWAIGTIEGWENTSQDNGHDSAQ 240

Query: 241 HSLIDLDYYSTVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKNTPLQLLDKKH 300
           HSLIDLDYYS+VEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTK+TPLQLLDKKH
Sbjct: 241 HSLIDLDYYSSVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH 300

Query: 301 FAKLSRQPIQNGAAAASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE 360
           FAKLSRQPIQNG A ASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE
Sbjct: 301 FAKLSRQPIQNGMAVASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE 360

Query: 361 EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 420
           EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN
Sbjct: 361 EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 420

Query: 421 YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRP 480
           YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRP
Sbjct: 421 YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRP 480

Query: 481 DLEEEYEDKE 491
           DLEEEYEDKE
Sbjct: 481 DLEEEYEDKE 490

[Close]

BLAST of Clc05G11390 vs. NCBI nr
Match: XP_011651597.1 (splicing factor SF3a60 homolog [Cucumis sativus] >KGN58266.1 hypothetical protein Csa_017628 [Cucumis sativus])

HSP 1 Score: 941.8 bits (2433), Expect = 2.5e-270
Identity = 472/490 (96.33%), Postives = 483/490 (98.57%), Query Frame = 0


Query: 1   MSSTLLEVTRASHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTDKLVD 60
           MSSTLLEVTR+SHEEVERLERLIVKELQNEPASGKDRLLQSHRVR+MIDTIMSTT+KLV+
Sbjct: 1   MSSTLLEVTRSSHEEVERLERLIVKELQNEPASGKDRLLQSHRVRSMIDTIMSTTEKLVE 60

Query: 61  VYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEDDGLLK 120
           +YEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDV+EDDGLLK
Sbjct: 61  IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVSEDDGLLK 120

Query: 121 EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDVFSQPQKISRKLKVSRQY 180
           EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDVFSQPQKIS+KLK SRQY
Sbjct: 121 EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDVFSQPQKISQKLKFSRQY 180

Query: 181 REYLENLLAYLIYFFQRTEPLQDLDRIFSKVESEFEERWTIGSIEGWENTGQENGHDSGP 240
           REYLENLLAYLIYFFQRTEPLQDLDRIFSKVESEFEERW IG+IEGWENT Q+NGHDS  
Sbjct: 181 REYLENLLAYLIYFFQRTEPLQDLDRIFSKVESEFEERWVIGTIEGWENTSQDNGHDSAQ 240

Query: 241 HSLIDLDYYSTVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKNTPLQLLDKKH 300
           HSLIDLDYYSTVEELVELGPERLKEGL ALGLKTGGTVQQRAERLFLTK+TPLQLLDKKH
Sbjct: 241 HSLIDLDYYSTVEELVELGPERLKEGLMALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH 300

Query: 301 FAKLSRQPIQNGAAAASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE 360
           FAKLSRQPIQNG+A ASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE
Sbjct: 301 FAKLSRQPIQNGSAVASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE 360

Query: 361 EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 420
           EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN
Sbjct: 361 EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 420

Query: 421 YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRP 480
           YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRP
Sbjct: 421 YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRP 480

Query: 481 DLEEEYEDKE 491
           DLEEEYEDKE
Sbjct: 481 DLEEEYEDKE 490

[Close]

BLAST of Clc05G11390 vs. NCBI nr
Match: XP_008466807.1 (PREDICTED: splicing factor 3A subunit 3 isoform X1 [Cucumis melo] >KAA0050498.1 splicing factor 3A subunit 3 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 939.5 bits (2427), Expect = 1.3e-269
Identity = 470/490 (95.92%), Postives = 482/490 (98.37%), Query Frame = 0


Query: 1   MSSTLLEVTRASHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTDKLVD 60
           MSSTLLEVTR+SHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTT+KL++
Sbjct: 1   MSSTLLEVTRSSHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLIE 60

Query: 61  VYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEDDGLLK 120
           +YEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDV+EDDGLLK
Sbjct: 61  IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVSEDDGLLK 120

Query: 121 EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDVFSQPQKISRKLKVSRQY 180
           EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLD+FSQPQKIS+KLK SRQY
Sbjct: 121 EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDIFSQPQKISQKLKFSRQY 180

Query: 181 REYLENLLAYLIYFFQRTEPLQDLDRIFSKVESEFEERWTIGSIEGWENTGQENGHDSGP 240
           REYLENLLAYLIYFFQRTEPLQDLDRIFSKVESEFEERW IG+IEGWENT Q+NGHDS  
Sbjct: 181 REYLENLLAYLIYFFQRTEPLQDLDRIFSKVESEFEERWAIGTIEGWENTSQDNGHDSAQ 240

Query: 241 HSLIDLDYYSTVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKNTPLQLLDKKH 300
           HSLIDLDYYS+VEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTK+TPLQLLDKKH
Sbjct: 241 HSLIDLDYYSSVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH 300

Query: 301 FAKLSRQPIQNGAAAASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE 360
           FAKLSRQPIQN  A ASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE
Sbjct: 301 FAKLSRQPIQNWMAVASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE 360

Query: 361 EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 420
           EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN
Sbjct: 361 EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 420

Query: 421 YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRP 480
           YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRP
Sbjct: 421 YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRP 480

Query: 481 DLEEEYEDKE 491
           DLEEEYEDKE
Sbjct: 481 DLEEEYEDKE 490

[Close]

BLAST of Clc05G11390 vs. NCBI nr
Match: XP_022140873.1 (splicing factor SF3a60 homolog [Momordica charantia])

HSP 1 Score: 927.5 bits (2396), Expect = 4.9e-266
Identity = 464/490 (94.69%), Postives = 480/490 (97.96%), Query Frame = 0


Query: 1   MSSTLLEVTRASHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTDKLVD 60
           MSSTLLEVTRASHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTT+KLV+
Sbjct: 1   MSSTLLEVTRASHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLVE 60

Query: 61  VYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEDDGLLK 120
           +YEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEDDGLLK
Sbjct: 61  IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEDDGLLK 120

Query: 121 EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDVFSQPQKISRKLKVSRQY 180
           EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGE IEYSSYLDVFSQPQKI RKLK+SRQY
Sbjct: 121 EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEPIEYSSYLDVFSQPQKIPRKLKISRQY 180

Query: 181 REYLENLLAYLIYFFQRTEPLQDLDRIFSKVESEFEERWTIGSIEGWENTGQENGHDSGP 240
           REY+ENLLAYLIYFFQRTEPLQDLDRIFSK ESEFEERW  G+IEGWENT +++GHD+ P
Sbjct: 181 REYMENLLAYLIYFFQRTEPLQDLDRIFSKGESEFEERWVTGTIEGWENTSKDDGHDTDP 240

Query: 241 HSLIDLDYYSTVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKNTPLQLLDKKH 300
            +LIDLDYYSTVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTK+TPLQLLDKKH
Sbjct: 241 LNLIDLDYYSTVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH 300

Query: 301 FAKLSRQPIQNGAAAASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE 360
           FAK+SR+PIQNGAAA S ++ENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE
Sbjct: 301 FAKVSREPIQNGAAATSLHDENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE 360

Query: 361 EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 420
           EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN
Sbjct: 361 EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 420

Query: 421 YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRP 480
           YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRP
Sbjct: 421 YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRP 480

Query: 481 DLEEEYEDKE 491
           DLEEEYEDKE
Sbjct: 481 DLEEEYEDKE 490

[Close]

BLAST of Clc05G11390 vs. ExPASy Swiss-Prot
Match: Q9FG01 (Splicing factor SF3a60 homolog OS=Arabidopsis thaliana OX=3702 GN=ATO PE=1 SV=1)

HSP 1 Score: 736.9 bits (1901), Expect = 1.6e-211
Identity = 368/491 (74.95%), Postives = 421/491 (85.74%), Query Frame = 0


Query: 1   MSSTLLEVTRASHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTDKLVD 60
           MSSTLLE TR++HEEVERLERL+V++LQ EP S KDRL+Q HRVR+MI++IM TT+KLV+
Sbjct: 1   MSSTLLEQTRSNHEEVERLERLVVEDLQKEPPSSKDRLVQGHRVRHMIESIMLTTEKLVE 60

Query: 61  VYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVNED-DGLL 120
            YEDKD A  DEIAALGGQT +GTNVFS FYDRLKEIREYH+RHP+ R+VD NED +  L
Sbjct: 61  TYEDKDGAWDDEIAALGGQTATGTNVFSEFYDRLKEIREYHKRHPSGRLVDANEDYEARL 120

Query: 121 KEEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDVFSQPQKISRKLKVSRQ 180
           KEEP I FSGEE  GRYLDLH++YNQYINSKFGE +EYS+YLDVFSQP+KI RKLK+SRQ
Sbjct: 121 KEEPIIAFSGEEGNGRYLDLHDMYNQYINSKFGERVEYSAYLDVFSQPEKIPRKLKLSRQ 180

Query: 181 YREYLENLLAYLIYFFQRTEPLQDLDRIFSKVESEFEERWTIGSIEGWENTGQENGHDSG 240
           Y +Y+E LL YL+YFFQRTEPLQDLDRI SKV S+FEE++  G +EG +N          
Sbjct: 181 YMKYMEALLEYLVYFFQRTEPLQDLDRILSKVCSDFEEQYADGIVEGLDNE-----LIPS 240

Query: 241 PHSLIDLDYYSTVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKNTPLQLLDKK 300
            H++IDLDYYSTVEELV++GPE+LKE L ALGLK GGT QQRAERLFLTK+TPL+ LDKK
Sbjct: 241 QHTVIDLDYYSTVEELVDVGPEKLKEALGALGLKVGGTPQQRAERLFLTKHTPLEKLDKK 300

Query: 301 HFAKLSRQPIQNGAAAASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTY 360
           HFA+      QNG A ++  +EN K++AL EAK++KLC+LLDETI RTK NIVKKQ+LTY
Sbjct: 301 HFARPPHNGKQNGDAKSTHESENAKEIALTEAKVKKLCNLLDETIERTKQNIVKKQSLTY 360

Query: 361 EEIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICG 420
           EE+E ERE EE   E ESDDE+  IYNPLKLP+GWDGKPIPYWLYKLHGLGQEFKCEICG
Sbjct: 361 EEMEGEREGEEANTELESDDEDGLIYNPLKLPIGWDGKPIPYWLYKLHGLGQEFKCEICG 420

Query: 421 NYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWR 480
           NYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAK+LWKRIQERQGVNKWR
Sbjct: 421 NYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKELWKRIQERQGVNKWR 480

Query: 481 PDLEEEYEDKE 491
           P+LEEEYED+E
Sbjct: 481 PELEEEYEDRE 486

[Close]

BLAST of Clc05G11390 vs. ExPASy Swiss-Prot
Match: Q12874 (Splicing factor 3A subunit 3 OS=Homo sapiens OX=9606 GN=SF3A3 PE=1 SV=1)

HSP 1 Score: 414.1 bits (1063), Expect = 2.4e-114
Identity = 231/495 (46.67%), Postives = 319/495 (64.44%), Query Frame = 0


Query: 4   TLLEVTRASHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTDKLVDVYE 63
           T+LE  R  HEE ERL  ++ KE+  + ++ +D++   HR R M D  M  +  L D+Y+
Sbjct: 3   TILEQQRRYHEEKERLMDVMAKEMLTKKSTLRDQINSDHRTRAMQDRYMEVSGNLRDLYD 62

Query: 64  DKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVN-EDDGLLK-- 123
           DKD  RK+E+ A+     SG N F+ FY+RLK+I+E+HR+HP    V ++ E + LLK  
Sbjct: 63  DKDGLRKEELNAI-----SGPNEFAEFYNRLKQIKEFHRKHPNEICVPMSVEFEELLKAR 122

Query: 124 ----EEPQ--IEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDVFSQPQKISRKL 183
               EE Q  +EF+ EE +GRYLDLH+ Y +YIN K  E ++Y +YL +F Q   I ++ 
Sbjct: 123 ENPSEEAQNLVEFTDEEGYGRYLDLHDCYLKYINLKASEKLDYITYLSIFDQLFDIPKER 182

Query: 184 KVSRQYREYLENLLAYLIYFFQRTEPLQDLDRIFSKVESEFEERWTIGSIEGWENTGQEN 243
           K + +Y+ YLE LL YL  +  R +PLQD + +F K+++EFE++W  G+  GW       
Sbjct: 183 K-NAEYKRYLEMLLEYLQDYTDRVKPLQDQNELFGKIQAEFEKKWENGTFPGWPKETSSA 242

Query: 244 GHDSGPHSLIDLDYYSTVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKNTPLQ 303
              +G H  +DL  +S+ EEL  LG +RLK  L ALGLK GGT+++RA+RLF TK   L+
Sbjct: 243 LTHAGAH--LDLSAFSSWEELASLGLDRLKSALLALGLKCGGTLEERAQRLFSTKGKSLE 302

Query: 304 LLDKKHFAKLSRQPIQNGAAAASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKK 363
            LD   FAK    P   G    ++ N   K +A +EA+I +  ++L E    T +N+ +K
Sbjct: 303 SLDTSLFAK---NPKSKGTKRDTERN---KDIAFLEAQIYEYVEILGEQRHLTHENVQRK 362

Query: 364 QALTYEEIEAEREEEETQAESESDDEEQQ-IYNPLKLPMGWDGKPIPYWLYKLHGLGQEF 423
           QA T E  E E EEEE  +ESES+DEE + IYNP  LP+GWDGKPIPYWLYKLHGL   +
Sbjct: 363 QARTGE--EREEEEEEQISESESEDEENEIIYNPKNLPLGWDGKPIPYWLYKLHGLNINY 422

Query: 424 KCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQ 483
            CEICGNY+Y G +AF+RHF EWRH HGMRCLGIPNT +F  +T IE+A  LW +++ ++
Sbjct: 423 NCEICGNYTYRGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDAVSLWAKLKLQK 481

Query: 484 GVNKWRPDLEEEYED 489
              +W+PD EEEYED
Sbjct: 483 ASERWQPDTEEEYED 481

[Close]

BLAST of Clc05G11390 vs. ExPASy Swiss-Prot
Match: Q9D554 (Splicing factor 3A subunit 3 OS=Mus musculus OX=10090 GN=Sf3a3 PE=1 SV=2)

HSP 1 Score: 413.3 bits (1061), Expect = 4.1e-114
Identity = 230/495 (46.46%), Postives = 319/495 (64.44%), Query Frame = 0


Query: 4   TLLEVTRASHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTDKLVDVYE 63
           T+LE  R  HEE ERL  ++ KE+  + ++ +D++   HR R M D  M  +  L D+Y+
Sbjct: 3   TILEQQRRYHEEKERLMDVMAKEMLTKKSTLRDQINSDHRTRAMQDRYMEVSGNLRDLYD 62

Query: 64  DKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVN-EDDGLLK-- 123
           DKD  RK+E+ A+     SG N F+ FY+RLK+I+E+HR+HP    V ++ E + LLK  
Sbjct: 63  DKDGLRKEELNAI-----SGPNEFAEFYNRLKQIKEFHRKHPNEICVPMSVEFEELLKAR 122

Query: 124 ----EEPQ--IEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDVFSQPQKISRKL 183
               EE Q  +EF+ EE +GRYLDLH+ Y +YIN K  E ++Y +YL +F Q   I ++ 
Sbjct: 123 ENPSEEAQNLVEFTDEEGYGRYLDLHDCYLKYINLKASEKLDYITYLSIFDQLFDIPKER 182

Query: 184 KVSRQYREYLENLLAYLIYFFQRTEPLQDLDRIFSKVESEFEERWTIGSIEGWENTGQEN 243
           K + +Y+ YLE LL YL  +  R +PLQD + +F K++++FE++W  G+  GW       
Sbjct: 183 K-NAEYKRYLEMLLEYLQDYTDRVKPLQDQNELFGKIQTDFEKKWDNGTFPGWPKETSSA 242

Query: 244 GHDSGPHSLIDLDYYSTVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKNTPLQ 303
              +G H  +DL  +S+ EEL  LG +RLK  L ALGLK GGT+++RA+RLF TK   L+
Sbjct: 243 LTHAGAH--LDLSAFSSWEELASLGLDRLKSALLALGLKCGGTLEERAQRLFSTKGKSLE 302

Query: 304 LLDKKHFAKLSRQPIQNGAAAASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKK 363
            LD   FAK    P   G    ++ N   K +A +EA+I +  ++L E    T +N+ +K
Sbjct: 303 SLDTSLFAK---NPKSKGTKRDTERN---KDIAFLEAQIYEYVEILGEQRQLTHENVQRK 362

Query: 364 QALTYEEIEAEREEEETQAESESDDEEQQ-IYNPLKLPMGWDGKPIPYWLYKLHGLGQEF 423
           QA T E  E E EEEE  +ESES+DEE + IYNP  LP+GWDGKPIPYWLYKLHGL   +
Sbjct: 363 QARTGE--EREEEEEEQISESESEDEENEIIYNPKNLPLGWDGKPIPYWLYKLHGLNINY 422

Query: 424 KCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQ 483
            CEICGNY+Y G +AF+RHF EWRH HGMRCLGIPNT +F  +T IE+A  LW +++ ++
Sbjct: 423 NCEICGNYTYRGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDAVSLWAKLKLQK 481

Query: 484 GVNKWRPDLEEEYED 489
              +W+PD EEEYED
Sbjct: 483 ASERWQPDTEEEYED 481

[Close]

BLAST of Clc05G11390 vs. ExPASy Swiss-Prot
Match: O46106 (Splicing factor 3A subunit 3 OS=Drosophila melanogaster OX=7227 GN=noi PE=1 SV=1)

HSP 1 Score: 370.5 bits (950), Expect = 3.0e-101
Identity = 216/495 (43.64%), Postives = 316/495 (63.84%), Query Frame = 0


Query: 4   TLLEVTRASHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTDKLVDVYE 63
           TLLE  R  HEE ERL +L+V E   +    K+R+   HR++ +++   ++T +L D+YE
Sbjct: 3   TLLEQQRRLHEERERLVKLMVDEHATKKPGEKERIHSEHRLKYLMELHHNSTSQLRDLYE 62

Query: 64  DKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVN-EDDGLLK-- 123
           DKD+ RK EIAAL     SG N F+ FY RLK+I+++++ HPA   V ++ E D +++  
Sbjct: 63  DKDNERKAEIAAL-----SGPNEFNEFYARLKQIKQFYKSHPAEVSVPLSVEFDEMIRVY 122

Query: 124 EEPQ-----IEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDVFSQPQKISRKLK 183
             P      +EF+ EE  GRYLDL+E Y  Y+N +  E ++Y +YL  F     I R+ K
Sbjct: 123 NNPDDMSALVEFTDEEGGGRYLDLNECYELYLNLRSVEKLDYITYLMSFDHVFDIPRERK 182

Query: 184 VSRQYREYLENLLAYLIYFFQRTEPLQDLDRIFSKVESEFEERWTIGSIEGWENTGQENG 243
            +R+YR Y+E L  YL +F  R +PL DL+    KVE +F+ +W +G+  G+     E+ 
Sbjct: 183 -NREYRIYIETLNDYLHHFILRIQPLLDLEGELLKVELDFQRQWLMGTFPGFSIKETESA 242

Query: 244 -HDSGPHSLIDLDYYSTVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKNTPLQ 303
             ++G H  +DL  +S+ EEL  LG +RLK  L ALGLK GGT+++RA+RLF TK     
Sbjct: 243 LANTGAH--LDLSAFSSWEELASLGLDRLKSALVALGLKCGGTLEERAQRLFSTKGK--S 302

Query: 304 LLDKKHFAKLSRQPIQNGAAAASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKK 363
            LD    A ++++P    A+A S+ +E  K++A +EA + K  DLL E  A TK+N+ +K
Sbjct: 303 TLDP---ALMAKKPSAKTASAQSREHERHKEIAQLEALLYKYADLLSEQRAATKENVQRK 362

Query: 364 QALTYEEIEAEREEEETQAESESDDEEQQI-YNPLKLPMGWDGKPIPYWLYKLHGLGQEF 423
           QA T  E + + + E +++++E D +   + YNP  LP+GWDGKPIPYWLYKLHGL   +
Sbjct: 363 QARTGGERD-DSDVEASESDNEDDPDADDVPYNPKNLPLGWDGKPIPYWLYKLHGLNISY 422

Query: 424 KCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQ 483
            CEICGN++Y G +AF+RHF EWRH HGMRCLGIPNT +F  +T IE+A  LW++++ ++
Sbjct: 423 NCEICGNFTYKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDAITLWEKLKSQK 482

Query: 484 GVNKWRPDLEEEYED 489
              +W  D EEE+ED
Sbjct: 483 QSERWVADQEEEFED 483

[Close]

BLAST of Clc05G11390 vs. ExPASy Swiss-Prot
Match: O59706 (Pre-mRNA-splicing factor sap61 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=sap61 PE=1 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 4.0e-69
Identity = 170/492 (34.55%), Postives = 267/492 (54.27%), Query Frame = 0


Query: 1   MSSTLLEVTRASHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTDKLVD 60
           MS ++LE  R +HEE+ERL++ IV      P + ++RL   H+    ++    T+ KL+ 
Sbjct: 1   MSESVLETERYAHEELERLQQAIVDRQVANPKAPRERLRLEHQSAQFLNQFRETSKKLLV 60

Query: 61  VYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEDDGLLK 120
            +E  D  +  E+A +     +  +  + FY  L EI+E+H+++P  +V D+++   +  
Sbjct: 61  SHESSDRLKDQEVARI-----NADDDLTEFYKSLGEIQEFHKKYPDHKVEDLSQLYSIKP 120

Query: 121 EEPQIE-----FSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDVFSQPQKISRKLK 180
            +P I+     F GEE +GR++DL+E Y +YIN    + I Y  YL       +I +  K
Sbjct: 121 SQPGIDEIDTLFRGEEMYGRFMDLNECYEEYINLSNVQHISYLEYLKNLEDFDQIPKPEK 180

Query: 181 VSRQYREYLENLLAYLIYFFQRTEPLQDLDRIFSKVESEFEERWTIGSIEGWENTGQENG 240
            ++ Y  Y+ +L  YL+ F++RT PL +LD+I +  ++EF+  W  G + GW +   E  
Sbjct: 181 -NQTYINYITHLYEYLVSFYRRTHPLSNLDKIIAVFDTEFDAAWEAG-LPGWYSHNAEAE 240

Query: 241 HDSGPHSLIDLDYYSTVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKNTPLQL 300
            D                          K+   A   +    V Q+    F  K T  + 
Sbjct: 241 KDG-------------------------KDSTEAFYCE----VCQK----FFGKITVFEA 300

Query: 301 LDKKHFAKLSRQPIQNGAAAASQN----NENLKQVALMEAKIEKLCDLLDETIARTKDNI 360
             K      + + +Q+ + + + N     +  K +A +E  I+KL  LLD+    T++N+
Sbjct: 301 HKKSKAHNKAVKRMQSSSPSTTSNTNEKQKGPKAIARIEFLIKKLTSLLDDVRKDTRENV 360

Query: 361 VKKQALTYEEIEAEREEEETQA--------------ESESD-DEEQQIYNPLKLPMGWDG 420
           V++Q LT  E  AE E  E +A              + ESD D+E++IYNPLKLP+GWDG
Sbjct: 361 VRRQTLTAAERLAEVEAAEREAFEQSTPSVSVEGNQDEESDQDDEEKIYNPLKLPLGWDG 420

Query: 421 KPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEI 469
           KPIP+WL+KLHGLG+EF CEICGNY Y GR+AF++HF E RH +G++CLGI  +  FN+I
Sbjct: 421 KPIPFWLWKLHGLGKEFPCEICGNYVYMGRKAFDKHFTEQRHIYGLKCLGISPSPLFNQI 452

[Close]

BLAST of Clc05G11390 vs. ExPASy TrEMBL
Match: A0A5D3E065 (Splicing factor 3A subunit 3 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G003640 PE=3 SV=1)

HSP 1 Score: 942.6 bits (2435), Expect = 7.2e-271
Identity = 471/490 (96.12%), Postives = 483/490 (98.57%), Query Frame = 0


Query: 1   MSSTLLEVTRASHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTDKLVD 60
           MSSTLLEVTR+SHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTT+KL++
Sbjct: 1   MSSTLLEVTRSSHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLIE 60

Query: 61  VYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEDDGLLK 120
           +YEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDV+EDDGLLK
Sbjct: 61  IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVSEDDGLLK 120

Query: 121 EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDVFSQPQKISRKLKVSRQY 180
           EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLD+FSQPQKIS+KLK SRQY
Sbjct: 121 EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDIFSQPQKISQKLKFSRQY 180

Query: 181 REYLENLLAYLIYFFQRTEPLQDLDRIFSKVESEFEERWTIGSIEGWENTGQENGHDSGP 240
           REYLENLLAYLIYFFQRTEPLQDLDRIFSKVESEFEERW IG+IEGWENT Q+NGHDS  
Sbjct: 181 REYLENLLAYLIYFFQRTEPLQDLDRIFSKVESEFEERWAIGTIEGWENTSQDNGHDSAQ 240

Query: 241 HSLIDLDYYSTVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKNTPLQLLDKKH 300
           HSLIDLDYYS+VEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTK+TPLQLLDKKH
Sbjct: 241 HSLIDLDYYSSVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH 300

Query: 301 FAKLSRQPIQNGAAAASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE 360
           FAKLSRQPIQNG A ASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE
Sbjct: 301 FAKLSRQPIQNGMAVASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE 360

Query: 361 EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 420
           EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN
Sbjct: 361 EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 420

Query: 421 YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRP 480
           YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRP
Sbjct: 421 YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRP 480

Query: 481 DLEEEYEDKE 491
           DLEEEYEDKE
Sbjct: 481 DLEEEYEDKE 490

[Close]

BLAST of Clc05G11390 vs. ExPASy TrEMBL
Match: A0A0A0LDU3 (Matrin-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G603040 PE=3 SV=1)

HSP 1 Score: 941.8 bits (2433), Expect = 1.2e-270
Identity = 472/490 (96.33%), Postives = 483/490 (98.57%), Query Frame = 0


Query: 1   MSSTLLEVTRASHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTDKLVD 60
           MSSTLLEVTR+SHEEVERLERLIVKELQNEPASGKDRLLQSHRVR+MIDTIMSTT+KLV+
Sbjct: 1   MSSTLLEVTRSSHEEVERLERLIVKELQNEPASGKDRLLQSHRVRSMIDTIMSTTEKLVE 60

Query: 61  VYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEDDGLLK 120
           +YEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDV+EDDGLLK
Sbjct: 61  IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVSEDDGLLK 120

Query: 121 EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDVFSQPQKISRKLKVSRQY 180
           EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDVFSQPQKIS+KLK SRQY
Sbjct: 121 EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDVFSQPQKISQKLKFSRQY 180

Query: 181 REYLENLLAYLIYFFQRTEPLQDLDRIFSKVESEFEERWTIGSIEGWENTGQENGHDSGP 240
           REYLENLLAYLIYFFQRTEPLQDLDRIFSKVESEFEERW IG+IEGWENT Q+NGHDS  
Sbjct: 181 REYLENLLAYLIYFFQRTEPLQDLDRIFSKVESEFEERWVIGTIEGWENTSQDNGHDSAQ 240

Query: 241 HSLIDLDYYSTVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKNTPLQLLDKKH 300
           HSLIDLDYYSTVEELVELGPERLKEGL ALGLKTGGTVQQRAERLFLTK+TPLQLLDKKH
Sbjct: 241 HSLIDLDYYSTVEELVELGPERLKEGLMALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH 300

Query: 301 FAKLSRQPIQNGAAAASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE 360
           FAKLSRQPIQNG+A ASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE
Sbjct: 301 FAKLSRQPIQNGSAVASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE 360

Query: 361 EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 420
           EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN
Sbjct: 361 EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 420

Query: 421 YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRP 480
           YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRP
Sbjct: 421 YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRP 480

Query: 481 DLEEEYEDKE 491
           DLEEEYEDKE
Sbjct: 481 DLEEEYEDKE 490

[Close]

BLAST of Clc05G11390 vs. ExPASy TrEMBL
Match: A0A5A7U5F1 (Splicing factor 3A subunit 3 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G001400 PE=3 SV=1)

HSP 1 Score: 939.5 bits (2427), Expect = 6.1e-270
Identity = 470/490 (95.92%), Postives = 482/490 (98.37%), Query Frame = 0


Query: 1   MSSTLLEVTRASHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTDKLVD 60
           MSSTLLEVTR+SHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTT+KL++
Sbjct: 1   MSSTLLEVTRSSHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLIE 60

Query: 61  VYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEDDGLLK 120
           +YEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDV+EDDGLLK
Sbjct: 61  IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVSEDDGLLK 120

Query: 121 EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDVFSQPQKISRKLKVSRQY 180
           EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLD+FSQPQKIS+KLK SRQY
Sbjct: 121 EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDIFSQPQKISQKLKFSRQY 180

Query: 181 REYLENLLAYLIYFFQRTEPLQDLDRIFSKVESEFEERWTIGSIEGWENTGQENGHDSGP 240
           REYLENLLAYLIYFFQRTEPLQDLDRIFSKVESEFEERW IG+IEGWENT Q+NGHDS  
Sbjct: 181 REYLENLLAYLIYFFQRTEPLQDLDRIFSKVESEFEERWAIGTIEGWENTSQDNGHDSAQ 240

Query: 241 HSLIDLDYYSTVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKNTPLQLLDKKH 300
           HSLIDLDYYS+VEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTK+TPLQLLDKKH
Sbjct: 241 HSLIDLDYYSSVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH 300

Query: 301 FAKLSRQPIQNGAAAASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE 360
           FAKLSRQPIQN  A ASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE
Sbjct: 301 FAKLSRQPIQNWMAVASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE 360

Query: 361 EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 420
           EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN
Sbjct: 361 EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 420

Query: 421 YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRP 480
           YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRP
Sbjct: 421 YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRP 480

Query: 481 DLEEEYEDKE 491
           DLEEEYEDKE
Sbjct: 481 DLEEEYEDKE 490

[Close]

BLAST of Clc05G11390 vs. ExPASy TrEMBL
Match: A0A1S3CTD5 (splicing factor 3A subunit 3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103504129 PE=3 SV=1)

HSP 1 Score: 939.5 bits (2427), Expect = 6.1e-270
Identity = 470/490 (95.92%), Postives = 482/490 (98.37%), Query Frame = 0


Query: 1   MSSTLLEVTRASHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTDKLVD 60
           MSSTLLEVTR+SHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTT+KL++
Sbjct: 1   MSSTLLEVTRSSHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLIE 60

Query: 61  VYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEDDGLLK 120
           +YEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDV+EDDGLLK
Sbjct: 61  IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVSEDDGLLK 120

Query: 121 EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDVFSQPQKISRKLKVSRQY 180
           EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLD+FSQPQKIS+KLK SRQY
Sbjct: 121 EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDIFSQPQKISQKLKFSRQY 180

Query: 181 REYLENLLAYLIYFFQRTEPLQDLDRIFSKVESEFEERWTIGSIEGWENTGQENGHDSGP 240
           REYLENLLAYLIYFFQRTEPLQDLDRIFSKVESEFEERW IG+IEGWENT Q+NGHDS  
Sbjct: 181 REYLENLLAYLIYFFQRTEPLQDLDRIFSKVESEFEERWAIGTIEGWENTSQDNGHDSAQ 240

Query: 241 HSLIDLDYYSTVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKNTPLQLLDKKH 300
           HSLIDLDYYS+VEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTK+TPLQLLDKKH
Sbjct: 241 HSLIDLDYYSSVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH 300

Query: 301 FAKLSRQPIQNGAAAASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE 360
           FAKLSRQPIQN  A ASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE
Sbjct: 301 FAKLSRQPIQNWMAVASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE 360

Query: 361 EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 420
           EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN
Sbjct: 361 EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 420

Query: 421 YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRP 480
           YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRP
Sbjct: 421 YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRP 480

Query: 481 DLEEEYEDKE 491
           DLEEEYEDKE
Sbjct: 481 DLEEEYEDKE 490

[Close]

BLAST of Clc05G11390 vs. ExPASy TrEMBL
Match: A0A6J1CJ06 (splicing factor SF3a60 homolog OS=Momordica charantia OX=3673 GN=LOC111011434 PE=3 SV=1)

HSP 1 Score: 927.5 bits (2396), Expect = 2.4e-266
Identity = 464/490 (94.69%), Postives = 480/490 (97.96%), Query Frame = 0


Query: 1   MSSTLLEVTRASHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTDKLVD 60
           MSSTLLEVTRASHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTT+KLV+
Sbjct: 1   MSSTLLEVTRASHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLVE 60

Query: 61  VYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEDDGLLK 120
           +YEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEDDGLLK
Sbjct: 61  IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEDDGLLK 120

Query: 121 EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDVFSQPQKISRKLKVSRQY 180
           EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGE IEYSSYLDVFSQPQKI RKLK+SRQY
Sbjct: 121 EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEPIEYSSYLDVFSQPQKIPRKLKISRQY 180

Query: 181 REYLENLLAYLIYFFQRTEPLQDLDRIFSKVESEFEERWTIGSIEGWENTGQENGHDSGP 240
           REY+ENLLAYLIYFFQRTEPLQDLDRIFSK ESEFEERW  G+IEGWENT +++GHD+ P
Sbjct: 181 REYMENLLAYLIYFFQRTEPLQDLDRIFSKGESEFEERWVTGTIEGWENTSKDDGHDTDP 240

Query: 241 HSLIDLDYYSTVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKNTPLQLLDKKH 300
            +LIDLDYYSTVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTK+TPLQLLDKKH
Sbjct: 241 LNLIDLDYYSTVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH 300

Query: 301 FAKLSRQPIQNGAAAASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE 360
           FAK+SR+PIQNGAAA S ++ENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE
Sbjct: 301 FAKVSREPIQNGAAATSLHDENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE 360

Query: 361 EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 420
           EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN
Sbjct: 361 EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 420

Query: 421 YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRP 480
           YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRP
Sbjct: 421 YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRP 480

Query: 481 DLEEEYEDKE 491
           DLEEEYEDKE
Sbjct: 481 DLEEEYEDKE 490

[Close]

BLAST of Clc05G11390 vs. TAIR 10
Match: AT5G06160.1 (splicing factor-related )

HSP 1 Score: 736.9 bits (1901), Expect = 1.1e-212
Identity = 368/491 (74.95%), Postives = 421/491 (85.74%), Query Frame = 0


Query: 1   MSSTLLEVTRASHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTDKLVD 60
           MSSTLLE TR++HEEVERLERL+V++LQ EP S KDRL+Q HRVR+MI++IM TT+KLV+
Sbjct: 1   MSSTLLEQTRSNHEEVERLERLVVEDLQKEPPSSKDRLVQGHRVRHMIESIMLTTEKLVE 60

Query: 61  VYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVNED-DGLL 120
            YEDKD A  DEIAALGGQT +GTNVFS FYDRLKEIREYH+RHP+ R+VD NED +  L
Sbjct: 61  TYEDKDGAWDDEIAALGGQTATGTNVFSEFYDRLKEIREYHKRHPSGRLVDANEDYEARL 120

Query: 121 KEEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDVFSQPQKISRKLKVSRQ 180
           KEEP I FSGEE  GRYLDLH++YNQYINSKFGE +EYS+YLDVFSQP+KI RKLK+SRQ
Sbjct: 121 KEEPIIAFSGEEGNGRYLDLHDMYNQYINSKFGERVEYSAYLDVFSQPEKIPRKLKLSRQ 180

Query: 181 YREYLENLLAYLIYFFQRTEPLQDLDRIFSKVESEFEERWTIGSIEGWENTGQENGHDSG 240
           Y +Y+E LL YL+YFFQRTEPLQDLDRI SKV S+FEE++  G +EG +N          
Sbjct: 181 YMKYMEALLEYLVYFFQRTEPLQDLDRILSKVCSDFEEQYADGIVEGLDNE-----LIPS 240

Query: 241 PHSLIDLDYYSTVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKNTPLQLLDKK 300
            H++IDLDYYSTVEELV++GPE+LKE L ALGLK GGT QQRAERLFLTK+TPL+ LDKK
Sbjct: 241 QHTVIDLDYYSTVEELVDVGPEKLKEALGALGLKVGGTPQQRAERLFLTKHTPLEKLDKK 300

Query: 301 HFAKLSRQPIQNGAAAASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTY 360
           HFA+      QNG A ++  +EN K++AL EAK++KLC+LLDETI RTK NIVKKQ+LTY
Sbjct: 301 HFARPPHNGKQNGDAKSTHESENAKEIALTEAKVKKLCNLLDETIERTKQNIVKKQSLTY 360

Query: 361 EEIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICG 420
           EE+E ERE EE   E ESDDE+  IYNPLKLP+GWDGKPIPYWLYKLHGLGQEFKCEICG
Sbjct: 361 EEMEGEREGEEANTELESDDEDGLIYNPLKLPIGWDGKPIPYWLYKLHGLGQEFKCEICG 420

Query: 421 NYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWR 480
           NYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAK+LWKRIQERQGVNKWR
Sbjct: 421 NYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKELWKRIQERQGVNKWR 480

Query: 481 PDLEEEYEDKE 491
           P+LEEEYED+E
Sbjct: 481 PELEEEYEDRE 486

[Close]

BLAST of Clc05G11390 vs. TAIR 10
Match: AT4G01000.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 56.6 bits (135), Expect = 6.9e-08
Identity = 30/64 (46.88%), Postives = 42/64 (65.62%), Query Frame = 0


Query: 240 PHSLIDLDYYSTVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKNTPLQLLDKK 299
           P   ++ D +++  ++  LG ERLK  L + GLK GGT+++RA RLFL K+TPL  L KK
Sbjct: 351 PVEPLNFDDFNSPADMEVLGMERLKTELQSRGLKCGGTLRERAARLFLLKSTPLDKLPKK 410

Query: 300 HFAK 304
             AK
Sbjct: 411 LLAK 414

[Close]

BLAST of Clc05G11390 vs. TAIR 10
Match: AT3G06455.1 (ubiquitin family protein )

HSP 1 Score: 50.8 bits (120), Expect = 3.8e-06
Identity = 27/55 (49.09%), Postives = 35/55 (63.64%), Query Frame = 0


Query: 249 YSTVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKNTPLQLLDKKHFAK 304
           +    ++  LG ERLK  L + GLK  GT+++RA RLFL K+TPL  L KK  AK
Sbjct: 290 FKAATDMEVLGMERLKTELQSRGLKCRGTLRERAARLFLLKSTPLDKLPKKLLAK 344

The following BLAST results are available for this feature:

BLAST of Clc05G11390 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038875231.1	2.2e-274	97.76	splicing factor SF3a60 homolog [Benincasa hispida]	[more]
TYK29174.1	1.5e-270	96.12	splicing factor 3A subunit 3 isoform X1 [Cucumis melo var. makuwa]	[more]
XP_011651597.1	2.5e-270	96.33	splicing factor SF3a60 homolog [Cucumis sativus] >KGN58266.1 hypothetical protei...	[more]
XP_008466807.1	1.3e-269	95.92	PREDICTED: splicing factor 3A subunit 3 isoform X1 [Cucumis melo] >KAA0050498.1 ...	[more]
XP_022140873.1	4.9e-266	94.69	splicing factor SF3a60 homolog [Momordica charantia]	[more]

BLAST of Clc05G11390 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FG01	1.6e-211	74.95	Splicing factor SF3a60 homolog OS=Arabidopsis thaliana OX=3702 GN=ATO PE=1 SV=1	[more]
Q12874	2.4e-114	46.67	Splicing factor 3A subunit 3 OS=Homo sapiens OX=9606 GN=SF3A3 PE=1 SV=1	[more]
Q9D554	4.1e-114	46.46	Splicing factor 3A subunit 3 OS=Mus musculus OX=10090 GN=Sf3a3 PE=1 SV=2	[more]
O46106	3.0e-101	43.64	Splicing factor 3A subunit 3 OS=Drosophila melanogaster OX=7227 GN=noi PE=1 SV=1	[more]
O59706	4.0e-69	34.55	Pre-mRNA-splicing factor sap61 OS=Schizosaccharomyces pombe (strain 972 / ATCC 2...	[more]

BLAST of Clc05G11390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E065	7.2e-271	96.12	Splicing factor 3A subunit 3 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A0A0LDU3	1.2e-270	96.33	Matrin-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G603040...	[more]
A0A5A7U5F1	6.1e-270	95.92	Splicing factor 3A subunit 3 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A1S3CTD5	6.1e-270	95.92	splicing factor 3A subunit 3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103504129 ...	[more]
A0A6J1CJ06	2.4e-266	94.69	splicing factor SF3a60 homolog OS=Momordica charantia OX=3673 GN=LOC111011434 PE...	[more]

BLAST of Clc05G11390 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G06160.1	1.1e-212	74.95	splicing factor-related	[more]
AT4G01000.1	6.9e-08	46.88	Ubiquitin-like superfamily protein	[more]
AT3G06455.1	3.8e-06	49.09	ubiquitin family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 352..379
None	No IPR available	PFAM	PF13297	Telomere_Sde2_2	coord: 244..303 e-value: 1.1E-25 score: 88.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 362..381
None	No IPR available	PANTHER	PTHR12786:SF6	BNAA03G01920D PROTEIN	coord: 1..490
None	No IPR available	PANTHER	PTHR12786	SPLICING FACTOR SF3A-RELATED	coord: 1..490
IPR021966	Splicing factor SF3a60 binding domain	PFAM	PF12108	SF3a60_bindingd	coord: 80..105 e-value: 4.3E-13 score: 48.9
IPR031774	SF3A3 domain	PFAM	PF16837	SF3A3	coord: 126..205 e-value: 3.9E-24 score: 84.9
IPR024598	Splicing factor SF3a60 subunit C-terminal	PFAM	PF11931	DUF3449	coord: 329..490 e-value: 8.2E-67 score: 224.7
IPR000690	Matrin/U1-C, C2H2-type zinc finger	PROSITE	PS50171	ZF_MATRIN	coord: 413..444 score: 9.357525

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc05G11390.2	Clc05G11390.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005681	spliceosomal complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003676	nucleic acid binding