Clc05G10300 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc05G10300
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Remorin family protein
Location	ClcChr05: 8271758 .. 8273210 (+)
RNA-Seq Expression	Clc05G10300
Synteny	Clc05G10300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTAGCGGAGAGCACAAGTGATGGGAAGAAGATCGAAATAAAAATTCAAGCTTGGGAAGATAGAGAAAAGACCAAAGCCGATAACAAGTAAGTTCTCTCTTCATTTTAATTAATATCTTTTTCGGTAATTTTTTGTTTTTTTAAGAGTAATTTTATAGTTCAAAAACACGACTTTGACTTGGTTGTATTGATAATATTTTTCCTAATTGAGTTATGTTTGTTAAATAAATAGTGATGATAAAAAATTTAAAAAAAAAAATTTGCTAAAAGTTATGTCCAATTACAAATCTAAGCTTAGTTGTAACATAGATGATAGACCCAATAATATTTTAGTTTAATATTTTTGTCCATAAACAAAAGTTTTTCTTTCGCTTTTTTCTTTTCTTTTCACAATTGGCAATTTTTCGAATAATTGGTATTGCTATTTACTTAAAAAATTTTGGAAGGGAATCTAAAAATAGATTTAGAAATTAAATTTTAATTTAAACAGTTTATCAAAATGTATTTGATAATCTATTTATAAATCATAAAATTAATTATAATTATATTAGTTTGAATATAAATTATTACTAATTAATTTATGATTAATTTTTTTAAAAAATTATTATTTTATAATATTATATAAATATATTATTATATATTTTAATTCAACAAAAATAGTTGATTTTATAAATAAAATACTATATTTGTTAATATTTTTATATATTTCTATATAATTATGCATTCTCAAAATTCAAATTCTAAATACATTAAAAACAAATTTTCATCTTTTTAGAAATTGCATTGTTTGAACATATAATTCGAAAATAGTTCTAAAAAACAGAATCCAGACTCATTAATTTACGAGTTGTTTTCAAATATAGAAAAACATAATCTAAAATGTCTACTAAACTCATTAATTTACGAGAAAAAAGAACAAACATAGAGATCATAGACACAAAAAAGAACAACAATATAAAATAATAATAATAATAACTTGAAATGTGAATTATTCTAAGACATGTTCGAGGGTGATTCTAAAATTAAAATCACTCCAAAATATCCAAACGTACCTTACACTAAGGTAAAGTGTTTGTATAAATTGTGCAGAGCTGAAAGGAAGTTGGCTTCTACTGAGGTATGGAAGAGCACAAAGAAAGCTGCTTTGGAAGCCGAAGTGAAGAAGATAGATGTAAATTAATTTCTTTTTTCCGTGTCCTTTGATTGTGAGTTTTTGAATTAATATTCTAATTATATATTATATGGATAAGGCTGGGTTGGAGAAGTTGAGATTAAAGGAGATGGAGAAGGTTAAAAACAAAGAGGCTGAGACCCATAAGGCAGTTGAATCAAAGAAGGCATCCATTGAAGCAAAAAGAGAGCAGCAAAAACAAAGGGTTGAAGAGAAAGCTGCCAAGCATAGATCTACCAATACAATTCCAACTAAGTGTTTTGGCATTTGCAATGACTGA

mRNA sequence

ATGCTAGCGGAGAGCACAAGTGATGGGAAGAAGATCGAAATAAAAATTCAAGCTTGGGAAGATAGAGAAAAGACCAAAGCCGATAACAAAGCTGAAAGGAAGTTGGCTTCTACTGAGGTATGGAAGAGCACAAAGAAAGCTGCTTTGGAAGCCGAAGTGAAGAAGATAGATGCTGGGTTGGAGAAGTTGAGATTAAAGGAGATGGAGAAGGTTAAAAACAAAGAGGCTGAGACCCATAAGGCAGTTGAATCAAAGAAGGCATCCATTGAAGCAAAAAGAGAGCAGCAAAAACAAAGGGTTGAAGAGAAAGCTGCCAAGCATAGATCTACCAATACAATTCCAACTAAGTGTTTTGGCATTTGCAATGACTGA

Coding sequence (CDS)

ATGCTAGCGGAGAGCACAAGTGATGGGAAGAAGATCGAAATAAAAATTCAAGCTTGGGAAGATAGAGAAAAGACCAAAGCCGATAACAAAGCTGAAAGGAAGTTGGCTTCTACTGAGGTATGGAAGAGCACAAAGAAAGCTGCTTTGGAAGCCGAAGTGAAGAAGATAGATGCTGGGTTGGAGAAGTTGAGATTAAAGGAGATGGAGAAGGTTAAAAACAAAGAGGCTGAGACCCATAAGGCAGTTGAATCAAAGAAGGCATCCATTGAAGCAAAAAGAGAGCAGCAAAAACAAAGGGTTGAAGAGAAAGCTGCCAAGCATAGATCTACCAATACAATTCCAACTAAGTGTTTTGGCATTTGCAATGACTGA

Protein sequence

MLAESTSDGKKIEIKIQAWEDREKTKADNKAERKLASTEVWKSTKKAALEAEVKKIDAGLEKLRLKEMEKVKNKEAETHKAVESKKASIEAKREQQKQRVEEKAAKHRSTNTIPTKCFGICND

Homology

[Close]

BLAST of Clc05G10300 vs. NCBI nr
Match: KGN57373.1 (hypothetical protein Csa_010046 [Cucumis sativus])

HSP 1 Score: 170.6 bits (431), Expect = 8.3e-39
Identity = 98/126 (77.78%), Postives = 108/126 (85.71%), Query Frame = 0


Query: 1   MLAE---STSDGKKIEIKIQAWEDREKTKADNKAERKLASTEVWKSTKKAALEAEVKKID 60
           M+AE   S +D +KIEIKIQ WEDREK KADNKAER+LASTE WK++KKAALEAEVKKID
Sbjct: 1   MVAETPASATDRRKIEIKIQVWEDREKIKADNKAERRLASTEAWKNSKKAALEAEVKKID 60

Query: 61  AGLEKLRLKEMEKVKNKEAETHKAVESKKASIEAKREQQKQRVEEKAAKHRSTNTIPTKC 120
           A L KLRL+ MEKVKNKEAETHKAVESKKASIEAKRE +K +VE KA  HR TNT+P KC
Sbjct: 61  ADLVKLRLRGMEKVKNKEAETHKAVESKKASIEAKRELKKLKVEGKAKVHRCTNTVPKKC 120

Query: 121 FGICND 124
           FGICND
Sbjct: 121 FGICND 126

[Close]

BLAST of Clc05G10300 vs. NCBI nr
Match: XP_004140777.2 (remorin [Cucumis sativus])

HSP 1 Score: 137.9 bits (346), Expect = 5.9e-29
Identity = 86/119 (72.27%), Postives = 98/119 (82.35%), Query Frame = 0


Query: 1   MLAE---STSDGKKIEIKIQAWEDREKTKADNKAERKLASTEVWKSTKKAALEAEVKKID 60
           M+AE   S +D +KIEIKIQ WEDREK KADNKAER+LASTE WK++KKAALEAEVKKID
Sbjct: 1   MVAETPASATDRRKIEIKIQVWEDREKIKADNKAERRLASTEAWKNSKKAALEAEVKKID 60

Query: 61  AGLEKLRLKEMEKVKNKEAETHKAVESKKASIEAKREQQKQRVEEKAAKHRSTNTIPTK 117
           A L KLRL+ MEKVKNKEAETHKAVESKKASIEAKRE +K +VE KA   +S   +P +
Sbjct: 61  ADLVKLRLRGMEKVKNKEAETHKAVESKKASIEAKRELKKLKVEGKA---KSLKNLPQR 116

[Close]

BLAST of Clc05G10300 vs. NCBI nr
Match: XP_017973082.1 (PREDICTED: remorin-like [Theobroma cacao])

HSP 1 Score: 104.4 bits (259), Expect = 7.3e-19
Identity = 57/112 (50.89%), Postives = 82/112 (73.21%), Query Frame = 0


Query: 10  KKIEIKIQAWEDREKTKADNKAERKLASTEVWKSTKKAALEAEVKKIDAGLEKLRLKEME 69
           +++E KI AW +REK K D+KA+RK+A T+ W+   KA  EA+ K I+   EKL+  ++E
Sbjct: 19  QQLESKINAWREREKAKVDHKADRKMAETQSWQEEMKACNEAKSKMIEVSAEKLKKLKIE 78

Query: 70  KVKNKEAETHKAVESKKASIEAKREQQKQRVEEKAAKHRSTNTIPTKCFGIC 122
           ++KNKEA+  K V  KKASIEA+RE+ K  +++KA K+R+TNT+P  CFGIC
Sbjct: 79  QLKNKEAQVQKTVAEKKASIEAQREKGKIAIDDKAEKYRATNTLPKTCFGIC 130

[Close]

BLAST of Clc05G10300 vs. NCBI nr
Match: CAA2955820.1 (Hypothetical predicted protein [Olea europaea subsp. europaea])

HSP 1 Score: 101.3 bits (251), Expect = 6.2e-18
Identity = 58/101 (57.43%), Postives = 78/101 (77.23%), Query Frame = 0


Query: 16  IQAWEDREKTKADNKAERKLASTEVWKSTKKAALEAEVKKIDAGLEKLRLKEMEKVKNKE 75
           I+AWED EKTKADNKA +K++S E W++TKKA++EA++K+I+   EK + +  EK+KNK 
Sbjct: 90  IKAWEDSEKTKADNKAYKKMSSVESWENTKKASVEAQIKQIEEEFEKKKAEYREKMKNKI 149

Query: 76  AETHKAVESKKASIEAKREQQKQRVEEKAAKHRSTNTIPTK 117
           AE HKA E K+A IEAK+++   +VEE AAK RSTNT P K
Sbjct: 150 AEIHKAAEEKRAMIEAKKKEDFLKVEETAAKFRSTNTTPNK 190

[Close]

BLAST of Clc05G10300 vs. NCBI nr
Match: XP_022845523.1 (remorin-like isoform X2 [Olea europaea var. sylvestris] >CAA3031940.1 Hypothetical predicted protein [Olea europaea subsp. europaea])

HSP 1 Score: 101.3 bits (251), Expect = 6.2e-18
Identity = 58/101 (57.43%), Postives = 78/101 (77.23%), Query Frame = 0


Query: 16  IQAWEDREKTKADNKAERKLASTEVWKSTKKAALEAEVKKIDAGLEKLRLKEMEKVKNKE 75
           I+AWED EKTKADNKA +K++S E W++TKKA++EA++K+I+   EK + +  EK+KNK 
Sbjct: 90  IKAWEDSEKTKADNKAYKKMSSVESWENTKKASVEAQIKQIEEEFEKKKAEYREKMKNKI 149

Query: 76  AETHKAVESKKASIEAKREQQKQRVEEKAAKHRSTNTIPTK 117
           AE HKA E K+A IEAK+++   +VEE AAK RSTNT P K
Sbjct: 150 AEIHKAAEEKRAMIEAKKKEDFLKVEETAAKFRSTNTTPNK 190

[Close]

BLAST of Clc05G10300 vs. ExPASy Swiss-Prot
Match: Q9FFA5 (Remorin 1.4 OS=Arabidopsis thaliana OX=3702 GN=REM1.4 PE=1 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.2e-18
Identity = 54/104 (51.92%), Postives = 77/104 (74.04%), Query Frame = 0


Query: 16  IQAWEDREKTKADNKAERKLASTEVWKSTKKAALEAEVKKIDAGLEKLRLKEMEKVKNKE 75
           I+AWE+ EK K +NKAE+KL+S   W++ KKAA+EAE+KK++  LEK + + +E++KNK 
Sbjct: 97  IKAWEEAEKCKVENKAEKKLSSIGSWENNKKAAVEAELKKMEEQLEKKKAEYVEQMKNKI 156

Query: 76  AETHKAVESKKASIEAKREQQKQRVEEKAAKHRSTNTIPTKCFG 120
           A+ HK  E K+A IEAKR ++  + EE AAK+R+T T P K FG
Sbjct: 157 AQIHKEAEEKRAMIEAKRGEEILKAEELAAKYRATGTAPKKLFG 200

[Close]

BLAST of Clc05G10300 vs. ExPASy Swiss-Prot
Match: P93788 (Remorin OS=Solanum tuberosum OX=4113 PE=1 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.4e-17
Identity = 53/105 (50.48%), Postives = 76/105 (72.38%), Query Frame = 0


Query: 16  IQAWEDREKTKADNKAERKLASTEVWKSTKKAALEAEVKKIDAGLEKLRLKEMEKVKNKE 75
           I+AWE+ EK+KA+NKA++K+++   W+++KKA LEAE+KK++  LEK + +  EK+KNK 
Sbjct: 93  IKAWEESEKSKAENKAQKKVSAIGAWENSKKANLEAELKKMEEQLEKKKAEYTEKMKNKI 152

Query: 76  AETHKAVESKKASIEAKREQQKQRVEEKAAKHRSTNTIPTKCFGI 121
           A  HK  E K+A IEAKR +   + EE AAK+R+T T P K  GI
Sbjct: 153 ALLHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGTAPKKILGI 197

[Close]

BLAST of Clc05G10300 vs. ExPASy Swiss-Prot
Match: Q9M2D8 (Uncharacterized protein At3g61260 OS=Arabidopsis thaliana OX=3702 GN=At3g61260 PE=1 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 9.2e-17
Identity = 49/104 (47.12%), Postives = 74/104 (71.15%), Query Frame = 0


Query: 16  IQAWEDREKTKADNKAERKLASTEVWKSTKKAALEAEVKKIDAGLEKLRLKEMEKVKNKE 75
           ++AWE+ EK+KA+NKAE+K+A    W+++KKAA+EA++KKI+  LEK + +  E++KNK 
Sbjct: 107 VRAWEESEKSKAENKAEKKIADVHAWENSKKAAVEAQLKKIEEQLEKKKAEYAERMKNKV 166

Query: 76  AETHKAVESKKASIEAKREQQKQRVEEKAAKHRSTNTIPTKCFG 120
           A  HK  E ++A IEAKR +   + EE AAK+R+T  +P    G
Sbjct: 167 AAIHKEAEERRAMIEAKRGEDVLKAEETAAKYRATGIVPKATCG 210

[Close]

BLAST of Clc05G10300 vs. ExPASy Swiss-Prot
Match: O80837 (Remorin OS=Arabidopsis thaliana OX=3702 GN=DBP PE=1 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.3e-15
Identity = 45/104 (43.27%), Postives = 74/104 (71.15%), Query Frame = 0


Query: 16  IQAWEDREKTKADNKAERKLASTEVWKSTKKAALEAEVKKIDAGLEKLRLKEMEKVKNKE 75
           I+AWE+ EK+KA+N+A++K++    W+++KKAA+EA+++KI+  LEK + +  EK+KNK 
Sbjct: 85  IKAWEESEKSKAENRAQKKISDVHAWENSKKAAVEAQLRKIEEKLEKKKAQYGEKMKNKV 144

Query: 76  AETHKAVESKKASIEAKREQQKQRVEEKAAKHRSTNTIPTKCFG 120
           A  HK  E K+A +EAK+ ++  + EE  AK+R+T  +P    G
Sbjct: 145 AAIHKLAEEKRAMVEAKKGEELLKAEEMGAKYRATGVVPKATCG 188

[Close]

BLAST of Clc05G10300 vs. ExPASy Swiss-Prot
Match: Q7XII4 (Remorin 4.1 OS=Oryza sativa subsp. japonica OX=39947 GN=REM4.1 PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 4.0e-04
Identity = 37/107 (34.58%), Postives = 58/107 (54.21%), Query Frame = 0


Query: 10  KKIEIKIQAWEDREKTKADNKAERKLASTEVWKSTKKAALEAEVKKIDAGLEKLRLKEME 69
           +++E KI AW+  E  K +N+ +R+      W+  +     A +KK +  LE+ R K ME
Sbjct: 206 EEVESKIAAWQIAEVAKVNNRFKREEVVINGWEGDQVEKANAWLKKYERKLEEKRAKAME 265

Query: 70  KVKNKEAETHKAVESKKASIEAKREQQKQRVEEKAAKHRSTNTIPTK 117
           K +N+ A+  +  E K+AS EAKR  +  RV E A   R+    P+K
Sbjct: 266 KAQNEVAKARRKAEEKRASAEAKRGTKVARVLELANFMRAVGRAPSK 312

[Close]

BLAST of Clc05G10300 vs. ExPASy TrEMBL
Match: A0A0A0L6I9 (Remorin_C domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G182090 PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 4.0e-39
Identity = 98/126 (77.78%), Postives = 108/126 (85.71%), Query Frame = 0


Query: 1   MLAE---STSDGKKIEIKIQAWEDREKTKADNKAERKLASTEVWKSTKKAALEAEVKKID 60
           M+AE   S +D +KIEIKIQ WEDREK KADNKAER+LASTE WK++KKAALEAEVKKID
Sbjct: 1   MVAETPASATDRRKIEIKIQVWEDREKIKADNKAERRLASTEAWKNSKKAALEAEVKKID 60

Query: 61  AGLEKLRLKEMEKVKNKEAETHKAVESKKASIEAKREQQKQRVEEKAAKHRSTNTIPTKC 120
           A L KLRL+ MEKVKNKEAETHKAVESKKASIEAKRE +K +VE KA  HR TNT+P KC
Sbjct: 61  ADLVKLRLRGMEKVKNKEAETHKAVESKKASIEAKRELKKLKVEGKAKVHRCTNTVPKKC 120

Query: 121 FGICND 124
           FGICND
Sbjct: 121 FGICND 126

[Close]

BLAST of Clc05G10300 vs. ExPASy TrEMBL
Match: A0A6J1BA75 (remorin-like OS=Herrania umbratica OX=108875 GN=LOC110425607 PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.1e-17
Identity = 56/109 (51.38%), Postives = 79/109 (72.48%), Query Frame = 0


Query: 10  KKIEIKIQAWEDREKTKADNKAERKLASTEVWKSTKKAALEAEVKKIDAGLEKLRLKEME 69
           +K+E KI AW +REK K D+KA+RK+A T+ W+   KA  EA+ K I+   EKLR  ++E
Sbjct: 19  QKLESKINAWREREKAKVDHKADRKMAETQSWQEEMKACNEAKSKMIEVSAEKLRKLKIE 78

Query: 70  KVKNKEAETHKAVESKKASIEAKREQQKQRVEEKAAKHRSTNTIPTKCF 119
           ++KNKEA+  K V  KKASIEA+RE+ K  +++KA K+R+TNT+P  CF
Sbjct: 79  QLKNKEAQVQKTVAEKKASIEAQREKGKIAIDDKAEKYRATNTLPKTCF 127

[Close]

BLAST of Clc05G10300 vs. ExPASy TrEMBL
Match: A0A2K1YDD2 (Remorin_C domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_012G140900 PE=3 SV=2)

HSP 1 Score: 99.4 bits (246), Expect = 1.1e-17
Identity = 57/124 (45.97%), Postives = 85/124 (68.55%), Query Frame = 0


Query: 2   LAESTSDGKKI--EIKIQAWEDREKTKADNKAERKLASTEVWKSTKKAALEAEVKKIDAG 61
           + E+  +  K+  E  I+AWED+EK K+ NKA+R L+  + W+   K + EA+  KI+A 
Sbjct: 1   MGEALKEMNKVLHERNIKAWEDKEKAKSANKAQRMLSDIKTWEEKMKISHEAKTMKIEAE 60

Query: 62  LEKLRLKEMEKVKNKEAETHKAVESKKASIEAKREQQKQRVEEKAAKHRSTNTIPTKCFG 121
           LE +R  + EK+KN+EA+  KA+E KKA+I+A+ +++   + EKA KHRS NT+P KCFG
Sbjct: 61  LESIRQHKHEKIKNEEAQIQKAMEQKKAAIDAQNQKKVLEITEKADKHRSNNTLPMKCFG 120

Query: 122 ICND 124
           IC D
Sbjct: 121 ICAD 124

[Close]

BLAST of Clc05G10300 vs. ExPASy TrEMBL
Match: A0A2P5XZ05 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A08G106200v1 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 3.3e-17
Identity = 57/112 (50.89%), Postives = 81/112 (72.32%), Query Frame = 0


Query: 10  KKIEIKIQAWEDREKTKADNKAERKLASTEVWKSTKKAALEAEVKKIDAGLEKLRLKEME 69
           K+I + I AWE+ EK+KA+NKA++KL+S   W++TKKAA+EAE+K+I+  L+K + + +E
Sbjct: 81  KRISL-INAWEESEKSKAENKAQKKLSSIAAWENTKKAAIEAELKRIEEKLDKQKAEYVE 140

Query: 70  KVKNKEAETHKAVESKKASIEAKREQQKQRVEEKAAKHRSTNTIPTKCFGIC 122
           K+KNK A  HK  E KKA +EAKR +   + EE AAK+R+T T P K  G C
Sbjct: 141 KMKNKAALIHKEAEEKKAIVEAKRGEDVLKAEELAAKYRATGTTPNKTLGCC 191

[Close]

BLAST of Clc05G10300 vs. ExPASy TrEMBL
Match: A0A5D2PEP0 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A08G116500v1 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 3.3e-17
Identity = 57/112 (50.89%), Postives = 81/112 (72.32%), Query Frame = 0


Query: 10  KKIEIKIQAWEDREKTKADNKAERKLASTEVWKSTKKAALEAEVKKIDAGLEKLRLKEME 69
           K+I + I AWE+ EK+KA+NKA++KL+S   W++TKKAA+EAE+K+I+  L+K + + +E
Sbjct: 81  KRISL-INAWEESEKSKAENKAQKKLSSIAAWENTKKAAIEAELKRIEEKLDKQKAEYVE 140

Query: 70  KVKNKEAETHKAVESKKASIEAKREQQKQRVEEKAAKHRSTNTIPTKCFGIC 122
           K+KNK A  HK  E KKA +EAKR +   + EE AAK+R+T T P K  G C
Sbjct: 141 KMKNKAALIHKEAEEKKAIVEAKRGEDVLKAEELAAKYRATGTTPNKTLGCC 191

[Close]

BLAST of Clc05G10300 vs. TAIR 10
Match: AT5G23750.1 (Remorin family protein )

HSP 1 Score: 93.2 bits (230), Expect = 1.6e-19
Identity = 54/104 (51.92%), Postives = 77/104 (74.04%), Query Frame = 0


Query: 16  IQAWEDREKTKADNKAERKLASTEVWKSTKKAALEAEVKKIDAGLEKLRLKEMEKVKNKE 75
           I+AWE+ EK K +NKAE+KL+S   W++ KKAA+EAE+KK++  LEK + + +E++KNK 
Sbjct: 97  IKAWEEAEKCKVENKAEKKLSSIGSWENNKKAAVEAELKKMEEQLEKKKAEYVEQMKNKI 156

Query: 76  AETHKAVESKKASIEAKREQQKQRVEEKAAKHRSTNTIPTKCFG 120
           A+ HK  E K+A IEAKR ++  + EE AAK+R+T T P K FG
Sbjct: 157 AQIHKEAEEKRAMIEAKRGEEILKAEELAAKYRATGTAPKKLFG 200

[Close]

BLAST of Clc05G10300 vs. TAIR 10
Match: AT5G23750.2 (Remorin family protein )

HSP 1 Score: 93.2 bits (230), Expect = 1.6e-19
Identity = 54/104 (51.92%), Postives = 77/104 (74.04%), Query Frame = 0


Query: 16  IQAWEDREKTKADNKAERKLASTEVWKSTKKAALEAEVKKIDAGLEKLRLKEMEKVKNKE 75
           I+AWE+ EK K +NKAE+KL+S   W++ KKAA+EAE+KK++  LEK + + +E++KNK 
Sbjct: 96  IKAWEEAEKCKVENKAEKKLSSIGSWENNKKAAVEAELKKMEEQLEKKKAEYVEQMKNKI 155

Query: 76  AETHKAVESKKASIEAKREQQKQRVEEKAAKHRSTNTIPTKCFG 120
           A+ HK  E K+A IEAKR ++  + EE AAK+R+T T P K FG
Sbjct: 156 AQIHKEAEEKRAMIEAKRGEEILKAEELAAKYRATGTAPKKLFG 199

[Close]

BLAST of Clc05G10300 vs. TAIR 10
Match: AT3G48940.1 (Remorin family protein )

HSP 1 Score: 90.1 bits (222), Expect = 1.3e-18
Identity = 53/110 (48.18%), Postives = 79/110 (71.82%), Query Frame = 0


Query: 10  KKIEIKIQAWEDREKTKADNKAERKLASTEVWKSTKKAALEAEVKKIDAGLEKLRLKEME 69
           K+I + I+AWE+ EK+K +NKA++K++S   W+++KKA++EAE+KKI+  L K +    E
Sbjct: 65  KRISL-IKAWEEAEKSKVENKAQKKISSVGAWENSKKASVEAELKKIEEQLNKKKAHYTE 124

Query: 70  KVKNKEAETHKAVESKKASIEAKREQQKQRVEEKAAKHRSTNTIPTKCFG 120
           ++KNK A+ HK  E K+A  EAKR +   + EE AAK+R+T T PTK FG
Sbjct: 125 QMKNKIAQIHKEAEEKRAMTEAKRGEDVLKAEEMAAKYRATGTAPTKLFG 173

[Close]

BLAST of Clc05G10300 vs. TAIR 10
Match: AT3G61260.1 (Remorin family protein )

HSP 1 Score: 87.8 bits (216), Expect = 6.6e-18
Identity = 49/104 (47.12%), Postives = 74/104 (71.15%), Query Frame = 0


Query: 16  IQAWEDREKTKADNKAERKLASTEVWKSTKKAALEAEVKKIDAGLEKLRLKEMEKVKNKE 75
           ++AWE+ EK+KA+NKAE+K+A    W+++KKAA+EA++KKI+  LEK + +  E++KNK 
Sbjct: 107 VRAWEESEKSKAENKAEKKIADVHAWENSKKAAVEAQLKKIEEQLEKKKAEYAERMKNKV 166

Query: 76  AETHKAVESKKASIEAKREQQKQRVEEKAAKHRSTNTIPTKCFG 120
           A  HK  E ++A IEAKR +   + EE AAK+R+T  +P    G
Sbjct: 167 AAIHKEAEERRAMIEAKRGEDVLKAEETAAKYRATGIVPKATCG 210

[Close]

BLAST of Clc05G10300 vs. TAIR 10
Match: AT2G45820.1 (Remorin family protein )

HSP 1 Score: 83.2 bits (204), Expect = 1.6e-16
Identity = 45/104 (43.27%), Postives = 74/104 (71.15%), Query Frame = 0


Query: 16  IQAWEDREKTKADNKAERKLASTEVWKSTKKAALEAEVKKIDAGLEKLRLKEMEKVKNKE 75
           I+AWE+ EK+KA+N+A++K++    W+++KKAA+EA+++KI+  LEK + +  EK+KNK 
Sbjct: 85  IKAWEESEKSKAENRAQKKISDVHAWENSKKAAVEAQLRKIEEKLEKKKAQYGEKMKNKV 144

Query: 76  AETHKAVESKKASIEAKREQQKQRVEEKAAKHRSTNTIPTKCFG 120
           A  HK  E K+A +EAK+ ++  + EE  AK+R+T  +P    G
Sbjct: 145 AAIHKLAEEKRAMVEAKKGEELLKAEEMGAKYRATGVVPKATCG 188

The following BLAST results are available for this feature:

BLAST of Clc05G10300 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57373.1	8.3e-39	77.78	hypothetical protein Csa_010046 [Cucumis sativus]	[more]
XP_004140777.2	5.9e-29	72.27	remorin [Cucumis sativus]	[more]
XP_017973082.1	7.3e-19	50.89	PREDICTED: remorin-like [Theobroma cacao]	[more]
CAA2955820.1	6.2e-18	57.43	Hypothetical predicted protein [Olea europaea subsp. europaea]	[more]
XP_022845523.1	6.2e-18	57.43	remorin-like isoform X2 [Olea europaea var. sylvestris] >CAA3031940.1 Hypothetic...	[more]

BLAST of Clc05G10300 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FFA5	2.2e-18	51.92	Remorin 1.4 OS=Arabidopsis thaliana OX=3702 GN=REM1.4 PE=1 SV=1	[more]
P93788	2.4e-17	50.48	Remorin OS=Solanum tuberosum OX=4113 PE=1 SV=1	[more]
Q9M2D8	9.2e-17	47.12	Uncharacterized protein At3g61260 OS=Arabidopsis thaliana OX=3702 GN=At3g61260 P...	[more]
O80837	2.3e-15	43.27	Remorin OS=Arabidopsis thaliana OX=3702 GN=DBP PE=1 SV=1	[more]
Q7XII4	4.0e-04	34.58	Remorin 4.1 OS=Oryza sativa subsp. japonica OX=39947 GN=REM4.1 PE=1 SV=1	[more]

BLAST of Clc05G10300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6I9	4.0e-39	77.78	Remorin_C domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G182090 P...	[more]
A0A6J1BA75	1.1e-17	51.38	remorin-like OS=Herrania umbratica OX=108875 GN=LOC110425607 PE=3 SV=1	[more]
A0A2K1YDD2	1.1e-17	45.97	Remorin_C domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_012G...	[more]
A0A2P5XZ05	3.3e-17	50.89	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A08G106200v1 PE...	[more]
A0A5D2PEP0	3.3e-17	50.89	Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A08G116500v1 P...	[more]

BLAST of Clc05G10300 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G23750.1	1.6e-19	51.92	Remorin family protein	[more]
AT5G23750.2	1.6e-19	51.92	Remorin family protein	[more]
AT3G48940.1	1.3e-18	48.18	Remorin family protein	[more]
AT3G61260.1	6.6e-18	47.12	Remorin family protein	[more]
AT2G45820.1	1.6e-16	43.27	Remorin family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 46..66
None	No IPR available	COILS	Coil	Coil	coord: 79..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..109
None	No IPR available	PANTHER	PTHR31775	OS02G0117200 PROTEIN	coord: 10..119
None	No IPR available	PANTHER	PTHR31775:SF31	CARBOXY-TERMINAL REGION REMORIN	coord: 10..119
IPR005516	Remorin, C-terminal	PFAM	PF03763	Remorin_C	coord: 11..116 e-value: 3.6E-20 score: 71.8

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc05G10300.2	Clc05G10300.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010033	response to organic substance
biological_process	GO:1901700	response to oxygen-containing compound
biological_process	GO:0006950	response to stress