Clc05G10250 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc05G10250
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Actin-depolymerizing factor
Location	ClcChr05: 8242542 .. 8244100 (-)
RNA-Seq Expression	Clc05G10250
Synteny	Clc05G10250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCTTTTCTTCCACCATTATTCTTCCCCTCCATTTTTCCCTCTCTCATACTCATTCTTCGTACACAAAAATGGTAATTCCATCTCTCTCTCTCTCTGACATCTTTCTTGGCTAAGTGTTCTTGTTTGCAATCTTCTTTTATTACTCTTTTCTCAATTTCCCACATCTTTATTACCGTTATTATCATTAATTAGGTTAAATTACAACGTTTGGACTGATTATTGGAATTTGAAATAGTGTGATAGTGACCTAAACTAATAATTACAACTGTCACATCGTTACAGGTCACCGACACACCGTTTCAATTCTCAACTTACGTTCAACATTCTAATGTATTATTTTTGCGCCAATGGTAGTTTTAAAACATTCATAAATTGTCATGAAAATGGTTGAAAGAATAGATATTTTTTTAAATAAAGAGCAAAGTTTAAGAGTATTAGTCTTATTGTTATCGGATTAGAGGAATGGTGAAATTTGAGAATAGGGACTCTTGTACCTCCAATCTTAAGTGGGTAGATGTTAATTATTATTAAACTATGCTCGTGTTGATATGAAAAGCGAAAAAGTTGTTTGTTTTTATAGGCAATCGTAAAATATGATTAGATAAAAAACGAAGAGAATGGAGTTATATATGGTTGTTATGAATTAGGCGAACTCTGCATCTGGAATGGCTGTGAGAGATGAATGCAAACTGAAATTTTTGGAGTTAAAAGCCAAGAGAAACTATCGATTCATTATATTCAAGATTGAGAACCAAGAAGTTGTCGTGGAGAAACTTGGAAGCCCTGAAGAGACTTATGATGATTTCACTGCCGCTATTCCTGCTAATGAGTGTCGCTATGCTGTCTTTGACTTTGATTTCACTACTGATGAGAATTGCCAGAAAAGCAAGATTTTCTTCATAGCATGGTAACATTCCAACTTTTCCTCTCTATCTATTATGCATTTTCGTTCTTTATTCTCTATTCTTTCAAAACTTGCAATGTACTATCACTTTTCACATTTTATAAGCATTTCAAAACTACCCTCGAAGCAAAAATCCATGGTAATGTTCAACAAAAATTGAGAATCGAACATGACATTTTATAAGCATTTCAAAACTACCCTCAAAGCAAAAATCCACGGTAATGTTCAACAAAAATTGAGAATCGAACATGACACGTTTTTAGTAGAACAAAAGAAGTTTATGATGCTGATATTAATAGCAATCCAAGGAAACACTATCCGAAACACCATTACTAGATTGCCTATTGAGAAATGTAAGGAGGGACAGAGAGAGAGAGAGAGAGAATTTCAACATACTTGGGTAAAATTTCAACTTCTTAATCAAATTTTGTGACATCAATTAAGCCATAAACTTAGAGACAAACGCATGAACTAAGTTTCCTATGATGTCTTTGTTTTGAAGGTCACCCGACACATCAAAAGTGAGAAATAAGATGGTTTATGCAAGCTCCAAGGACAGATTCAAGAGGGAATTGGATGGAATTCAGGTGGAATTGCAAGCCACAGATCCTAGCGAAATGAGCTTTGACATAATCAAAGCTCGAGCTTTTTAA

mRNA sequence

tctcttttcttccaccattattcttcccctccatttttccctctctcatactcattcttcgtacacaaaaatggcgaactctgcatctggaatggctgtgagagatgaatgcaaactgaaatttttggagttaaaagccaagagaaactatcgattcattatattcaagattgagaaccaagaagttgtcgtggagaaacttggaagccctgaagagacttatgatgatttcactgccgctattcctgctaatgagtgtcgctatgctgtctttgactttgatttcactactgatgagaattgccagaaaagcaagattttcttcatagcatggtcacccgacacatcaaaagtgagaaataagatggtttatgcaagctccaaggacagattcaagagggaattggatggaattcaggtggaattgcaagccacagatcctagcgaaatgagctttgacataatcaaagctcgagctttttaa

Coding sequence (CDS)

ATGGCGAACTCTGCATCTGGAATGGCTGTGAGAGATGAATGCAAACTGAAATTTTTGGAGTTAAAAGCCAAGAGAAACTATCGATTCATTATATTCAAGATTGAGAACCAAGAAGTTGTCGTGGAGAAACTTGGAAGCCCTGAAGAGACTTATGATGATTTCACTGCCGCTATTCCTGCTAATGAGTGTCGCTATGCTGTCTTTGACTTTGATTTCACTACTGATGAGAATTGCCAGAAAAGCAAGATTTTCTTCATAGCATGGTCACCCGACACATCAAAAGTGAGAAATAAGATGGTTTATGCAAGCTCCAAGGACAGATTCAAGAGGGAATTGGATGGAATTCAGGTGGAATTGCAAGCCACAGATCCTAGCGAAATGAGCTTTGACATAATCAAAGCTCGAGCTTTTTAA

Protein sequence

MANSASGMAVRDECKLKFLELKAKRNYRFIIFKIENQEVVVEKLGSPEETYDDFTAAIPANECRYAVFDFDFTTDENCQKSKIFFIAWSPDTSKVRNKMVYASSKDRFKRELDGIQVELQATDPSEMSFDIIKARAF

Homology

[Close]

BLAST of Clc05G10250 vs. NCBI nr
Match: KAA0033654.1 (zinc finger CCHC domain-containing protein 9 [Cucumis melo var. makuwa])

HSP 1 Score: 271.9 bits (694), Expect = 2.9e-69
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 2   ANSASGMAVRDECKLKFLELKAKRNYRFIIFKIENQEVVVEKLGSPEETYDDFTAAIPAN 61
           AN+ASGMAVRDECKLKFLELKAKRNYRFIIFKIENQEVVVEKLGSPEETYDDFTAAIPAN
Sbjct: 277 ANAASGMAVRDECKLKFLELKAKRNYRFIIFKIENQEVVVEKLGSPEETYDDFTAAIPAN 336

Query: 62  ECRYAVFDFDFTTDENCQKSKIFFIAWSPDTSKVRNKMVYASSKDRFKRELDGIQVELQA 121
           ECRYAVFDFDFTTDENCQKSKIFFIAWSPDTSKVRNKMVYASSKDRFKRELDGIQVELQA
Sbjct: 337 ECRYAVFDFDFTTDENCQKSKIFFIAWSPDTSKVRNKMVYASSKDRFKRELDGIQVELQA 396

Query: 122 TDPSEMSFDIIKARAF 138
           TDPSEMSFDIIKARAF
Sbjct: 397 TDPSEMSFDIIKARAF 412

[Close]

BLAST of Clc05G10250 vs. NCBI nr
Match: XP_038886312.1 (uncharacterized protein LOC120076526 [Benincasa hispida])

HSP 1 Score: 271.9 bits (694), Expect = 2.9e-69
Identity = 135/137 (98.54%), Postives = 136/137 (99.27%), Query Frame = 0


Query: 1   MANSASGMAVRDECKLKFLELKAKRNYRFIIFKIENQEVVVEKLGSPEETYDDFTAAIPA 60
           MANSASGMAVRDECKLKFLELK KRNYRFIIFKIENQEVVVEKLGSPEETY+DFTAAIPA
Sbjct: 309 MANSASGMAVRDECKLKFLELKTKRNYRFIIFKIENQEVVVEKLGSPEETYEDFTAAIPA 368

Query: 61  NECRYAVFDFDFTTDENCQKSKIFFIAWSPDTSKVRNKMVYASSKDRFKRELDGIQVELQ 120
           NECRYAVFDFDFTTDENCQKSKIFFIAWSPDTSKVRNKMVYASSKDRFKRELDGIQVELQ
Sbjct: 369 NECRYAVFDFDFTTDENCQKSKIFFIAWSPDTSKVRNKMVYASSKDRFKRELDGIQVELQ 428

Query: 121 ATDPSEMSFDIIKARAF 138
           ATDPSEMSFDIIKARAF
Sbjct: 429 ATDPSEMSFDIIKARAF 445

[Close]

BLAST of Clc05G10250 vs. NCBI nr
Match: XP_008439227.1 (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103484078 [Cucumis melo])

HSP 1 Score: 271.9 bits (694), Expect = 2.9e-69
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 2   ANSASGMAVRDECKLKFLELKAKRNYRFIIFKIENQEVVVEKLGSPEETYDDFTAAIPAN 61
           AN+ASGMAVRDECKLKFLELKAKRNYRFIIFKIENQEVVVEKLGSPEETYDDFTAAIPAN
Sbjct: 251 ANAASGMAVRDECKLKFLELKAKRNYRFIIFKIENQEVVVEKLGSPEETYDDFTAAIPAN 310

Query: 62  ECRYAVFDFDFTTDENCQKSKIFFIAWSPDTSKVRNKMVYASSKDRFKRELDGIQVELQA 121
           ECRYAVFDFDFTTDENCQKSKIFFIAWSPDTSKVRNKMVYASSKDRFKRELDGIQVELQA
Sbjct: 311 ECRYAVFDFDFTTDENCQKSKIFFIAWSPDTSKVRNKMVYASSKDRFKRELDGIQVELQA 370

Query: 122 TDPSEMSFDIIKARAF 138
           TDPSEMSFDIIKARAF
Sbjct: 371 TDPSEMSFDIIKARAF 386

[Close]

BLAST of Clc05G10250 vs. NCBI nr
Match: XP_031738809.1 (actin-depolymerizing factor 7 [Cucumis sativus] >KGN57376.1 hypothetical protein Csa_009508 [Cucumis sativus])

HSP 1 Score: 270.8 bits (691), Expect = 6.5e-69
Identity = 134/137 (97.81%), Postives = 136/137 (99.27%), Query Frame = 0


Query: 1   MANSASGMAVRDECKLKFLELKAKRNYRFIIFKIENQEVVVEKLGSPEETYDDFTAAIPA 60
           MAN+ASGMAVRDECKLKFLELK KRNYRFIIFKIENQEVVVEKLGSPEETYDDF+AAIPA
Sbjct: 1   MANAASGMAVRDECKLKFLELKTKRNYRFIIFKIENQEVVVEKLGSPEETYDDFSAAIPA 60

Query: 61  NECRYAVFDFDFTTDENCQKSKIFFIAWSPDTSKVRNKMVYASSKDRFKRELDGIQVELQ 120
           NECRYAVFDFDFTTDENCQKSKIFFIAWSPDTSKVRNKMVYASSKDRFKRELDGIQVELQ
Sbjct: 61  NECRYAVFDFDFTTDENCQKSKIFFIAWSPDTSKVRNKMVYASSKDRFKRELDGIQVELQ 120

Query: 121 ATDPSEMSFDIIKARAF 138
           ATDPSEMSFDIIKARAF
Sbjct: 121 ATDPSEMSFDIIKARAF 137

[Close]

BLAST of Clc05G10250 vs. NCBI nr
Match: XP_022141136.1 (uncharacterized protein LOC111011601 [Momordica charantia])

HSP 1 Score: 267.7 bits (683), Expect = 5.5e-68
Identity = 132/137 (96.35%), Postives = 136/137 (99.27%), Query Frame = 0


Query: 1   MANSASGMAVRDECKLKFLELKAKRNYRFIIFKIENQEVVVEKLGSPEETYDDFTAAIPA 60
           MANSASGMAVRDECKLKF+ELKAKRNYRFIIFKIENQEVVVEKLGSPEETY+DFTAAIP 
Sbjct: 340 MANSASGMAVRDECKLKFMELKAKRNYRFIIFKIENQEVVVEKLGSPEETYEDFTAAIPP 399

Query: 61  NECRYAVFDFDFTTDENCQKSKIFFIAWSPDTSKVRNKMVYASSKDRFKRELDGIQVELQ 120
           +ECRYAVFDFDFTTDENCQKSKIFFIAWSPDTS+VRNKMVYASSKDRFKRELDGIQVELQ
Sbjct: 400 DECRYAVFDFDFTTDENCQKSKIFFIAWSPDTSRVRNKMVYASSKDRFKRELDGIQVELQ 459

Query: 121 ATDPSEMSFDIIKARAF 138
           ATDPSEMSFDIIKARAF
Sbjct: 460 ATDPSEMSFDIIKARAF 476

[Close]

BLAST of Clc05G10250 vs. ExPASy Swiss-Prot
Match: Q67ZM4 (Actin-depolymerizing factor 7 OS=Arabidopsis thaliana OX=3702 GN=ADF7 PE=2 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 2.7e-65
Identity = 120/136 (88.24%), Postives = 132/136 (97.06%), Query Frame = 0


Query: 1   MANSASGMAVRDECKLKFLELKAKRNYRFIIFKIENQEVVVEKLGSPEETYDDFTAAIPA 60
           MAN+ASGMAV DECKLKFLELK+KRNYRFIIF+I+ Q+VVVEKLG+P+ETYDDFTA++PA
Sbjct: 1   MANAASGMAVEDECKLKFLELKSKRNYRFIIFRIDGQQVVVEKLGNPDETYDDFTASLPA 60

Query: 61  NECRYAVFDFDFTTDENCQKSKIFFIAWSPDTSKVRNKMVYASSKDRFKRELDGIQVELQ 120
           NECRYAVFDFDF TDENCQKSKIFFIAWSPD+S+VR KMVYASSKDRFKRELDGIQVELQ
Sbjct: 61  NECRYAVFDFDFITDENCQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVELQ 120

Query: 121 ATDPSEMSFDIIKARA 137
           ATDPSEMSFDIIK+RA
Sbjct: 121 ATDPSEMSFDIIKSRA 136

[Close]

BLAST of Clc05G10250 vs. ExPASy Swiss-Prot
Match: Q8LFH6 (Actin-depolymerizing factor 12 OS=Arabidopsis thaliana OX=3702 GN=ADF12 PE=2 SV=2)

HSP 1 Score: 236.1 bits (601), Expect = 2.3e-61
Identity = 116/136 (85.29%), Postives = 126/136 (92.65%), Query Frame = 0


Query: 1   MANSASGMAVRDECKLKFLELKAKRNYRFIIFKIENQEVVVEKLGSPEETYDDFTAAIPA 60
           MAN+ASGMAV DECKLKFLELKAKRNYRFIIF+I+ Q+VVVEKLGSP+E YDDFT  +P 
Sbjct: 1   MANAASGMAVEDECKLKFLELKAKRNYRFIIFRIDGQQVVVEKLGSPQENYDDFTNYLPP 60

Query: 61  NECRYAVFDFDFTTDENCQKSKIFFIAWSPDTSKVRNKMVYASSKDRFKRELDGIQVELQ 120
           NECRYAV+DFDFTT EN QKSKIFFIAWSPD+S+VR KMVYASSKDRFKRELDGIQVELQ
Sbjct: 61  NECRYAVYDFDFTTAENIQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVELQ 120

Query: 121 ATDPSEMSFDIIKARA 137
           ATDPSEMS DIIK+RA
Sbjct: 121 ATDPSEMSLDIIKSRA 136

[Close]

BLAST of Clc05G10250 vs. ExPASy Swiss-Prot
Match: P30175 (Actin-depolymerizing factor OS=Lilium longiflorum OX=4690 PE=2 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 4.0e-61
Identity = 114/139 (82.01%), Postives = 127/139 (91.37%), Query Frame = 0


Query: 1   MANSASGMAVRDECKLKFLELKAKRNYRFIIFKIEN--QEVVVEKLGSPEETYDDFTAAI 60
           MANS+SGMAV DECKLKF+ELKAKRN+RFI+FKIE   Q+V VE+LG P E+YDDFT  +
Sbjct: 1   MANSSSGMAVDDECKLKFMELKAKRNFRFIVFKIEEKVQQVTVERLGQPNESYDDFTECL 60

Query: 61  PANECRYAVFDFDFTTDENCQKSKIFFIAWSPDTSKVRNKMVYASSKDRFKRELDGIQVE 120
           P NECRYAVFDFDF TDENCQKSKIFFI+WSPDTS+VR+KM+YAS+KDRFKRELDGIQVE
Sbjct: 61  PPNECRYAVFDFDFVTDENCQKSKIFFISWSPDTSRVRSKMLYASTKDRFKRELDGIQVE 120

Query: 121 LQATDPSEMSFDIIKARAF 138
           LQATDPSEMS DIIKARAF
Sbjct: 121 LQATDPSEMSMDIIKARAF 139

[Close]

BLAST of Clc05G10250 vs. ExPASy Swiss-Prot
Match: Q9LQ81 (Actin-depolymerizing factor 10 OS=Arabidopsis thaliana OX=3702 GN=ADF10 PE=2 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 7.5e-60
Identity = 112/137 (81.75%), Postives = 127/137 (92.70%), Query Frame = 0


Query: 1   MANSASGMAVRDECKLKFLELKAKRNYRFIIFKIEN--QEVVVEKLGSPEETYDDFTAAI 60
           MANSASGM V DECKLKFLELKAKRNYRFI+FKI+   Q+V+++KLG+PEETY+DFT +I
Sbjct: 1   MANSASGMHVSDECKLKFLELKAKRNYRFIVFKIDEKAQQVMIDKLGNPEETYEDFTRSI 60

Query: 61  PANECRYAVFDFDFTTDENCQKSKIFFIAWSPDTSKVRNKMVYASSKDRFKRELDGIQVE 120
           P +ECRYAV+D+DFTT ENCQKSKIFFIAWSPDTS+VR+KM+YASSKDRFKRELDGIQVE
Sbjct: 61  PEDECRYAVYDYDFTTPENCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKRELDGIQVE 120

Query: 121 LQATDPSEMSFDIIKAR 136
           LQATDPSEMS DIIK R
Sbjct: 121 LQATDPSEMSLDIIKGR 137

[Close]

BLAST of Clc05G10250 vs. ExPASy Swiss-Prot
Match: Q7XSN9 (Actin-depolymerizing factor 6 OS=Oryza sativa subsp. japonica OX=39947 GN=ADF6 PE=2 SV=2)

HSP 1 Score: 230.7 bits (587), Expect = 9.8e-60
Identity = 113/138 (81.88%), Postives = 128/138 (92.75%), Query Frame = 0


Query: 1   MANSASGMAVRDECKLKFLELKAKRNYRFIIFKIE--NQEVVVEKLGSPEETYDDFTAAI 60
           MANSASGMAV DECKLKF ELK+KR++RFI FKI+   Q+VVV++LG P +TYDDFTA++
Sbjct: 1   MANSASGMAVGDECKLKFQELKSKRSFRFITFKIDERTQQVVVDRLGQPGDTYDDFTASM 60

Query: 61  PANECRYAVFDFDFTTDENCQKSKIFFIAWSPDTSKVRNKMVYASSKDRFKRELDGIQVE 120
           PA+ECRYAVFDFDF TDENCQKSKIFFI+WSPDTSKVR+KM+YASSKDRFKRELDGIQVE
Sbjct: 61  PASECRYAVFDFDFVTDENCQKSKIFFISWSPDTSKVRSKMLYASSKDRFKRELDGIQVE 120

Query: 121 LQATDPSEMSFDIIKARA 137
           LQATDPSEMS DI+KARA
Sbjct: 121 LQATDPSEMSMDIVKARA 138

[Close]

BLAST of Clc05G10250 vs. ExPASy TrEMBL
Match: A0A5A7SR44 (Zinc finger CCHC domain-containing protein 9 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold239G001180 PE=3 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.4e-69
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 2   ANSASGMAVRDECKLKFLELKAKRNYRFIIFKIENQEVVVEKLGSPEETYDDFTAAIPAN 61
           AN+ASGMAVRDECKLKFLELKAKRNYRFIIFKIENQEVVVEKLGSPEETYDDFTAAIPAN
Sbjct: 277 ANAASGMAVRDECKLKFLELKAKRNYRFIIFKIENQEVVVEKLGSPEETYDDFTAAIPAN 336

Query: 62  ECRYAVFDFDFTTDENCQKSKIFFIAWSPDTSKVRNKMVYASSKDRFKRELDGIQVELQA 121
           ECRYAVFDFDFTTDENCQKSKIFFIAWSPDTSKVRNKMVYASSKDRFKRELDGIQVELQA
Sbjct: 337 ECRYAVFDFDFTTDENCQKSKIFFIAWSPDTSKVRNKMVYASSKDRFKRELDGIQVELQA 396

Query: 122 TDPSEMSFDIIKARAF 138
           TDPSEMSFDIIKARAF
Sbjct: 397 TDPSEMSFDIIKARAF 412

[Close]

BLAST of Clc05G10250 vs. ExPASy TrEMBL
Match: A0A1S3AY90 (LOW QUALITY PROTEIN: uncharacterized protein LOC103484078 OS=Cucumis melo OX=3656 GN=LOC103484078 PE=3 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.4e-69
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 2   ANSASGMAVRDECKLKFLELKAKRNYRFIIFKIENQEVVVEKLGSPEETYDDFTAAIPAN 61
           AN+ASGMAVRDECKLKFLELKAKRNYRFIIFKIENQEVVVEKLGSPEETYDDFTAAIPAN
Sbjct: 251 ANAASGMAVRDECKLKFLELKAKRNYRFIIFKIENQEVVVEKLGSPEETYDDFTAAIPAN 310

Query: 62  ECRYAVFDFDFTTDENCQKSKIFFIAWSPDTSKVRNKMVYASSKDRFKRELDGIQVELQA 121
           ECRYAVFDFDFTTDENCQKSKIFFIAWSPDTSKVRNKMVYASSKDRFKRELDGIQVELQA
Sbjct: 311 ECRYAVFDFDFTTDENCQKSKIFFIAWSPDTSKVRNKMVYASSKDRFKRELDGIQVELQA 370

Query: 122 TDPSEMSFDIIKARAF 138
           TDPSEMSFDIIKARAF
Sbjct: 371 TDPSEMSFDIIKARAF 386

[Close]

BLAST of Clc05G10250 vs. ExPASy TrEMBL
Match: A0A0A0LBE8 (ADF-H domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G182120 PE=3 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 3.2e-69
Identity = 134/137 (97.81%), Postives = 136/137 (99.27%), Query Frame = 0


Query: 1   MANSASGMAVRDECKLKFLELKAKRNYRFIIFKIENQEVVVEKLGSPEETYDDFTAAIPA 60
           MAN+ASGMAVRDECKLKFLELK KRNYRFIIFKIENQEVVVEKLGSPEETYDDF+AAIPA
Sbjct: 1   MANAASGMAVRDECKLKFLELKTKRNYRFIIFKIENQEVVVEKLGSPEETYDDFSAAIPA 60

Query: 61  NECRYAVFDFDFTTDENCQKSKIFFIAWSPDTSKVRNKMVYASSKDRFKRELDGIQVELQ 120
           NECRYAVFDFDFTTDENCQKSKIFFIAWSPDTSKVRNKMVYASSKDRFKRELDGIQVELQ
Sbjct: 61  NECRYAVFDFDFTTDENCQKSKIFFIAWSPDTSKVRNKMVYASSKDRFKRELDGIQVELQ 120

Query: 121 ATDPSEMSFDIIKARAF 138
           ATDPSEMSFDIIKARAF
Sbjct: 121 ATDPSEMSFDIIKARAF 137

[Close]

BLAST of Clc05G10250 vs. ExPASy TrEMBL
Match: A0A6J1CI48 (uncharacterized protein LOC111011601 OS=Momordica charantia OX=3673 GN=LOC111011601 PE=3 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 2.7e-68
Identity = 132/137 (96.35%), Postives = 136/137 (99.27%), Query Frame = 0


Query: 1   MANSASGMAVRDECKLKFLELKAKRNYRFIIFKIENQEVVVEKLGSPEETYDDFTAAIPA 60
           MANSASGMAVRDECKLKF+ELKAKRNYRFIIFKIENQEVVVEKLGSPEETY+DFTAAIP 
Sbjct: 340 MANSASGMAVRDECKLKFMELKAKRNYRFIIFKIENQEVVVEKLGSPEETYEDFTAAIPP 399

Query: 61  NECRYAVFDFDFTTDENCQKSKIFFIAWSPDTSKVRNKMVYASSKDRFKRELDGIQVELQ 120
           +ECRYAVFDFDFTTDENCQKSKIFFIAWSPDTS+VRNKMVYASSKDRFKRELDGIQVELQ
Sbjct: 400 DECRYAVFDFDFTTDENCQKSKIFFIAWSPDTSRVRNKMVYASSKDRFKRELDGIQVELQ 459

Query: 121 ATDPSEMSFDIIKARAF 138
           ATDPSEMSFDIIKARAF
Sbjct: 460 ATDPSEMSFDIIKARAF 476

[Close]

BLAST of Clc05G10250 vs. ExPASy TrEMBL
Match: A0A5D3DH64 (Zinc finger CCHC domain-containing protein 9 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold386G00570 PE=3 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 1.1e-66
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 8   MAVRDECKLKFLELKAKRNYRFIIFKIENQEVVVEKLGSPEETYDDFTAAIPANECRYAV 67
           MAVRDECKLKFLELKAKRNYRFIIFKIENQEVVVEKLGSPEETYDDFTAAIPANECRYAV
Sbjct: 1   MAVRDECKLKFLELKAKRNYRFIIFKIENQEVVVEKLGSPEETYDDFTAAIPANECRYAV 60

Query: 68  FDFDFTTDENCQKSKIFFIAWSPDTSKVRNKMVYASSKDRFKRELDGIQVELQATDPSEM 127
           FDFDFTTDENCQKSKIFFIAWSPDTSKVRNKMVYASSKDRFKRELDGIQVELQATDPSEM
Sbjct: 61  FDFDFTTDENCQKSKIFFIAWSPDTSKVRNKMVYASSKDRFKRELDGIQVELQATDPSEM 120

Query: 128 SFDIIKARAF 138
           SFDIIKARAF
Sbjct: 121 SFDIIKARAF 130

[Close]

BLAST of Clc05G10250 vs. TAIR 10
Match: AT4G25590.1 (actin depolymerizing factor 7 )

HSP 1 Score: 249.2 bits (635), Expect = 1.9e-66
Identity = 120/136 (88.24%), Postives = 132/136 (97.06%), Query Frame = 0


Query: 1   MANSASGMAVRDECKLKFLELKAKRNYRFIIFKIENQEVVVEKLGSPEETYDDFTAAIPA 60
           MAN+ASGMAV DECKLKFLELK+KRNYRFIIF+I+ Q+VVVEKLG+P+ETYDDFTA++PA
Sbjct: 1   MANAASGMAVEDECKLKFLELKSKRNYRFIIFRIDGQQVVVEKLGNPDETYDDFTASLPA 60

Query: 61  NECRYAVFDFDFTTDENCQKSKIFFIAWSPDTSKVRNKMVYASSKDRFKRELDGIQVELQ 120
           NECRYAVFDFDF TDENCQKSKIFFIAWSPD+S+VR KMVYASSKDRFKRELDGIQVELQ
Sbjct: 61  NECRYAVFDFDFITDENCQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVELQ 120

Query: 121 ATDPSEMSFDIIKARA 137
           ATDPSEMSFDIIK+RA
Sbjct: 121 ATDPSEMSFDIIKSRA 136

[Close]

BLAST of Clc05G10250 vs. TAIR 10
Match: AT5G52360.1 (actin depolymerizing factor 10 )

HSP 1 Score: 236.1 bits (601), Expect = 1.7e-62
Identity = 116/136 (85.29%), Postives = 126/136 (92.65%), Query Frame = 0


Query: 1   MANSASGMAVRDECKLKFLELKAKRNYRFIIFKIENQEVVVEKLGSPEETYDDFTAAIPA 60
           MAN+ASGMAV DECKLKFLELKAKRNYRFIIF+I+ Q+VVVEKLGSP+E YDDFT  +P 
Sbjct: 1   MANAASGMAVEDECKLKFLELKAKRNYRFIIFRIDGQQVVVEKLGSPQENYDDFTNYLPP 60

Query: 61  NECRYAVFDFDFTTDENCQKSKIFFIAWSPDTSKVRNKMVYASSKDRFKRELDGIQVELQ 120
           NECRYAV+DFDFTT EN QKSKIFFIAWSPD+S+VR KMVYASSKDRFKRELDGIQVELQ
Sbjct: 61  NECRYAVYDFDFTTAENIQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVELQ 120

Query: 121 ATDPSEMSFDIIKARA 137
           ATDPSEMS DIIK+RA
Sbjct: 121 ATDPSEMSLDIIKSRA 136

[Close]

BLAST of Clc05G10250 vs. TAIR 10
Match: AT1G01750.1 (actin depolymerizing factor 11 )

HSP 1 Score: 231.1 bits (588), Expect = 5.3e-61
Identity = 112/137 (81.75%), Postives = 127/137 (92.70%), Query Frame = 0


Query: 1   MANSASGMAVRDECKLKFLELKAKRNYRFIIFKIEN--QEVVVEKLGSPEETYDDFTAAI 60
           MANSASGM V DECKLKFLELKAKRNYRFI+FKI+   Q+V+++KLG+PEETY+DFT +I
Sbjct: 1   MANSASGMHVSDECKLKFLELKAKRNYRFIVFKIDEKAQQVMIDKLGNPEETYEDFTRSI 60

Query: 61  PANECRYAVFDFDFTTDENCQKSKIFFIAWSPDTSKVRNKMVYASSKDRFKRELDGIQVE 120
           P +ECRYAV+D+DFTT ENCQKSKIFFIAWSPDTS+VR+KM+YASSKDRFKRELDGIQVE
Sbjct: 61  PEDECRYAVYDYDFTTPENCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKRELDGIQVE 120

Query: 121 LQATDPSEMSFDIIKAR 136
           LQATDPSEMS DIIK R
Sbjct: 121 LQATDPSEMSLDIIKGR 137

[Close]

BLAST of Clc05G10250 vs. TAIR 10
Match: AT4G00680.1 (actin depolymerizing factor 8 )

HSP 1 Score: 229.2 bits (583), Expect = 2.0e-60
Identity = 110/137 (80.29%), Postives = 127/137 (92.70%), Query Frame = 0


Query: 1   MANSASGMAVRDECKLKFLELKAKRNYRFIIFKIEN--QEVVVEKLGSPEETYDDFTAAI 60
           MANSASGM V DECK+KFLELKAKR YRFI+FKI+   Q+V +EKLG+PEETYDDFT++I
Sbjct: 1   MANSASGMHVNDECKIKFLELKAKRTYRFIVFKIDEKAQQVQIEKLGNPEETYDDFTSSI 60

Query: 61  PANECRYAVFDFDFTTDENCQKSKIFFIAWSPDTSKVRNKMVYASSKDRFKRELDGIQVE 120
           P +ECRYAV+DFDFTT++NCQKSKIFFIAWSPDTS+VR+KM+YASSKDRFKRE++GIQVE
Sbjct: 61  PDDECRYAVYDFDFTTEDNCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKREMEGIQVE 120

Query: 121 LQATDPSEMSFDIIKAR 136
           LQATDPSEMS DIIK R
Sbjct: 121 LQATDPSEMSLDIIKGR 137

[Close]

BLAST of Clc05G10250 vs. TAIR 10
Match: AT3G46000.1 (actin depolymerizing factor 2 )

HSP 1 Score: 221.9 bits (564), Expect = 3.2e-58
Identity = 100/135 (74.07%), Postives = 124/135 (91.85%), Query Frame = 0


Query: 1   MANSASGMAVRDECKLKFLELKAKRNYRFIIFKIENQEVVVEKLGSPEETYDDFTAAIPA 60
           MAN+ASGMAV D+CKLKF+ELKAKR +R I++KIE+++V+VEKLG PE++YDDF A++PA
Sbjct: 1   MANAASGMAVHDDCKLKFMELKAKRTFRTIVYKIEDKQVIVEKLGEPEQSYDDFAASLPA 60

Query: 61  NECRYAVFDFDFTTDENCQKSKIFFIAWSPDTSKVRNKMVYASSKDRFKRELDGIQVELQ 120
           ++CRY ++DFDF T ENCQKSKIFFIAWSPDT+KVR+KM+YASSKDRFKRELDGIQVELQ
Sbjct: 61  DDCRYCIYDFDFVTAENCQKSKIFFIAWSPDTAKVRDKMIYASSKDRFKRELDGIQVELQ 120

Query: 121 ATDPSEMSFDIIKAR 136
           ATDP+EM  D+ K+R
Sbjct: 121 ATDPTEMGLDVFKSR 135

The following BLAST results are available for this feature:

BLAST of Clc05G10250 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033654.1	2.9e-69	99.26	zinc finger CCHC domain-containing protein 9 [Cucumis melo var. makuwa]	[more]
XP_038886312.1	2.9e-69	98.54	uncharacterized protein LOC120076526 [Benincasa hispida]	[more]
XP_008439227.1	2.9e-69	99.26	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103484078 [Cucumis me...	[more]
XP_031738809.1	6.5e-69	97.81	actin-depolymerizing factor 7 [Cucumis sativus] >KGN57376.1 hypothetical protein...	[more]
XP_022141136.1	5.5e-68	96.35	uncharacterized protein LOC111011601 [Momordica charantia]	[more]

BLAST of Clc05G10250 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q67ZM4	2.7e-65	88.24	Actin-depolymerizing factor 7 OS=Arabidopsis thaliana OX=3702 GN=ADF7 PE=2 SV=1	[more]
Q8LFH6	2.3e-61	85.29	Actin-depolymerizing factor 12 OS=Arabidopsis thaliana OX=3702 GN=ADF12 PE=2 SV=...	[more]
P30175	4.0e-61	82.01	Actin-depolymerizing factor OS=Lilium longiflorum OX=4690 PE=2 SV=1	[more]
Q9LQ81	7.5e-60	81.75	Actin-depolymerizing factor 10 OS=Arabidopsis thaliana OX=3702 GN=ADF10 PE=2 SV=...	[more]
Q7XSN9	9.8e-60	81.88	Actin-depolymerizing factor 6 OS=Oryza sativa subsp. japonica OX=39947 GN=ADF6 P...	[more]

BLAST of Clc05G10250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SR44	1.4e-69	99.26	Zinc finger CCHC domain-containing protein 9 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A1S3AY90	1.4e-69	99.26	LOW QUALITY PROTEIN: uncharacterized protein LOC103484078 OS=Cucumis melo OX=365...	[more]
A0A0A0LBE8	3.2e-69	97.81	ADF-H domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G182120 PE=3 ...	[more]
A0A6J1CI48	2.7e-68	96.35	uncharacterized protein LOC111011601 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A5D3DH64	1.1e-66	100.00	Zinc finger CCHC domain-containing protein 9 OS=Cucumis melo var. makuwa OX=1194...	[more]

BLAST of Clc05G10250 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G25590.1	1.9e-66	88.24	actin depolymerizing factor 7	[more]
AT5G52360.1	1.7e-62	85.29	actin depolymerizing factor 10	[more]
AT1G01750.1	5.3e-61	81.75	actin depolymerizing factor 11	[more]
AT4G00680.1	2.0e-60	80.29	actin depolymerizing factor 8	[more]
AT3G46000.1	3.2e-58	74.07	actin depolymerizing factor 2	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002108	Actin-depolymerising factor homology domain	SMART	SM00102	adf_2	coord: 12..137 e-value: 3.7E-58 score: 209.2
IPR002108	Actin-depolymerising factor homology domain	PFAM	PF00241	Cofilin_ADF	coord: 14..134 e-value: 3.0E-38 score: 130.4
IPR002108	Actin-depolymerising factor homology domain	PROSITE	PS51263	ADF_H	coord: 5..137 score: 37.426323
IPR029006	ADF-H/Gelsolin-like domain superfamily	GENE3D	3.40.20.10	Severin	coord: 1..136 e-value: 1.7E-53 score: 182.7
None	No IPR available	PANTHER	PTHR11913:SF92	COFILIN/ACTIN-DEPOLYMERIZING FACTOR-LIKE PROTEIN	coord: 2..137
None	No IPR available	SUPERFAMILY	55753	Actin depolymerizing proteins	coord: 3..135
IPR017904	ADF/Cofilin	PANTHER	PTHR11913	COFILIN-RELATED	coord: 2..137
IPR017904	ADF/Cofilin	CDD	cd11286	ADF_cofilin_like	coord: 6..136 e-value: 5.6565E-64 score: 189.305

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc05G10250.1	Clc05G10250.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030042	actin filament depolymerization
cellular_component	GO:0015629	actin cytoskeleton
molecular_function	GO:0003779	actin binding
molecular_function	GO:0004386	helicase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding