Clc05G10170 (gene) Watermelon (cordophanus) v2

Overview
NameClc05G10170
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionMyb transcription factor
LocationClcChr05: 8197329 .. 8197901 (+)
RNA-Seq ExpressionClc05G10170
SyntenyClc05G10170
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAAGAAGAGAAAGAGAAATGGAAAGTACAGAAACAGAGAAAGAAAAAAGAAAGAAGAAAGGGTTATGGTCACCTGAGGAAGATGAAAAGTTGAGAAGCTTCATCCTCAAGAATGGCCATGGCTGCTGGACCTCTGTCCCCATTAAAGCTGGTCAGACTTTTTCCCTTTTTGACTCCCAACTAATCATTCTTTGTATTCATAACATTAAAATTTTGAACCCTTTTTGGTAATTTCAAGTGCAGGGTTACTAAGAAACTCAAAGAGCTGCAGATTGAGATGGATTAATTACCTAAGGCCAGGGCTGAAAAGAGGAATGTTTAGCCAACAAGAAGAAGAGAAAATCTTGACCCTTCATCACTTGTTAGGCAACAAGTAAAAATCTAACTTTTTCTTTTCGAGCTATGTTACCAATACCATGTTAAAATCATTGATGGATTACGATGAATTCGATTAGGTGGTCTAAGATAGCGCAGCATTTAGTAGGAAGAACAGACAACGAGATAAAGAACTATTGGAATTCTCATCTGAAGAAGAAAGTTGTCTCGGGTTTGGAGGATTCTAAAAGTTGA

mRNA sequence

ATGCAAAGAAGAGAAAGAGAAATGGAAAGTACAGAAACAGAGAAAGAAAAAAGAAAGAAGAAAGGGTTATGGTCACCTGAGGAAGATGAAAAGTTGAGAAGCTTCATCCTCAAGAATGGCCATGGCTGCTGGACCTCTGTCCCCATTAAAGCTGGGTTACTAAGAAACTCAAAGAGCTGCAGATTGAGATGGATTAATTACCTAAGGCCAGGGCTGAAAAGAGGAATGTTTAGCCAACAAGAAGAAGAGAAAATCTTGACCCTTCATCACTTGTTAGGCAACAAGTGGTCTAAGATAGCGCAGCATTTAGTAGGAAGAACAGACAACGAGATAAAGAACTATTGGAATTCTCATCTGAAGAAGAAAGTTGTCTCGGGTTTGGAGGATTCTAAAAGTTGA

Coding sequence (CDS)

ATGCAAAGAAGAGAAAGAGAAATGGAAAGTACAGAAACAGAGAAAGAAAAAAGAAAGAAGAAAGGGTTATGGTCACCTGAGGAAGATGAAAAGTTGAGAAGCTTCATCCTCAAGAATGGCCATGGCTGCTGGACCTCTGTCCCCATTAAAGCTGGGTTACTAAGAAACTCAAAGAGCTGCAGATTGAGATGGATTAATTACCTAAGGCCAGGGCTGAAAAGAGGAATGTTTAGCCAACAAGAAGAAGAGAAAATCTTGACCCTTCATCACTTGTTAGGCAACAAGTGGTCTAAGATAGCGCAGCATTTAGTAGGAAGAACAGACAACGAGATAAAGAACTATTGGAATTCTCATCTGAAGAAGAAAGTTGTCTCGGGTTTGGAGGATTCTAAAAGTTGA

Protein sequence

MQRREREMESTETEKEKRKKKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCRLRWINYLRPGLKRGMFSQQEEEKILTLHHLLGNKWSKIAQHLVGRTDNEIKNYWNSHLKKKVVSGLEDSKS
Homology
[Close]
BLAST of Clc05G10170 vs. NCBI nr
Match: XP_008439218.1 (PREDICTED: transcription factor LAF1-like isoform X2 [Cucumis melo])

HSP 1 Score: 233.4 bits (594), Expect = 1.1e-57
Identity = 114/124 (91.94%), Postives = 117/124 (94.35%), Query Frame = 0 

Query: 2   QRREREMESTETEKEKRKKKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCR 61
           QRREREM   ETEKEK KKKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCR
Sbjct: 30  QRREREMGCRETEKEKVKKKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCR 89

Query: 62  LRWINYLRPGLKRGMFSQQEEEKILTLHHLLGNKWSKIAQHLVGRTDNEIKNYWNSHLKK 121
           LRW NYLRPGLKRGMFSQQE+EKILTLH LLGN+WS+IAQHL GRTDNEIKNYWNSHLKK
Sbjct: 90  LRWFNYLRPGLKRGMFSQQEDEKILTLHRLLGNRWSQIAQHLAGRTDNEIKNYWNSHLKK 149

Query: 122 KVVS 126
           KVVS
Sbjct: 150 KVVS 153

[Close]
BLAST of Clc05G10170 vs. NCBI nr
Match: XP_008439220.1 (PREDICTED: transcription factor LAF1-like isoform X4 [Cucumis melo])

HSP 1 Score: 226.9 bits (577), Expect = 1.0e-55
Identity = 114/130 (87.69%), Postives = 117/130 (90.00%), Query Frame = 0 

Query: 2   QRREREMESTETEKEKRKKKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCR 61
           QRREREM   ETEKEK KKKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCR
Sbjct: 30  QRREREMGCRETEKEKVKKKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCR 89

Query: 62  LRWINYLRPGLKRGMFSQQEEEKILTLHHLLGN------KWSKIAQHLVGRTDNEIKNYW 121
           LRW NYLRPGLKRGMFSQQE+EKILTLH LLGN      +WS+IAQHL GRTDNEIKNYW
Sbjct: 90  LRWFNYLRPGLKRGMFSQQEDEKILTLHRLLGNRMMISIRWSQIAQHLAGRTDNEIKNYW 149

Query: 122 NSHLKKKVVS 126
           NSHLKKKVVS
Sbjct: 150 NSHLKKKVVS 159

[Close]
BLAST of Clc05G10170 vs. NCBI nr
Match: XP_008439219.1 (PREDICTED: transcription factor LAF1-like isoform X3 [Cucumis melo])

HSP 1 Score: 226.9 bits (577), Expect = 1.0e-55
Identity = 114/130 (87.69%), Postives = 117/130 (90.00%), Query Frame = 0 

Query: 2   QRREREMESTETEKEKRKKKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCR 61
           QRREREM   ETEKEK KKKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCR
Sbjct: 30  QRREREMGCRETEKEKVKKKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCR 89

Query: 62  LRWINYLRPGLKRGMFSQQEEEKILTLHHLLGN------KWSKIAQHLVGRTDNEIKNYW 121
           LRW NYLRPGLKRGMFSQQE+EKILTLH LLGN      +WS+IAQHL GRTDNEIKNYW
Sbjct: 90  LRWFNYLRPGLKRGMFSQQEDEKILTLHRLLGNRMMISIRWSQIAQHLAGRTDNEIKNYW 149

Query: 122 NSHLKKKVVS 126
           NSHLKKKVVS
Sbjct: 150 NSHLKKKVVS 159

[Close]
BLAST of Clc05G10170 vs. NCBI nr
Match: XP_008439216.1 (PREDICTED: transcription factor LAF1-like isoform X1 [Cucumis melo])

HSP 1 Score: 226.9 bits (577), Expect = 1.0e-55
Identity = 114/130 (87.69%), Postives = 117/130 (90.00%), Query Frame = 0 

Query: 2   QRREREMESTETEKEKRKKKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCR 61
           QRREREM   ETEKEK KKKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCR
Sbjct: 30  QRREREMGCRETEKEKVKKKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCR 89

Query: 62  LRWINYLRPGLKRGMFSQQEEEKILTLHHLLGN------KWSKIAQHLVGRTDNEIKNYW 121
           LRW NYLRPGLKRGMFSQQE+EKILTLH LLGN      +WS+IAQHL GRTDNEIKNYW
Sbjct: 90  LRWFNYLRPGLKRGMFSQQEDEKILTLHRLLGNRMMISIRWSQIAQHLAGRTDNEIKNYW 149

Query: 122 NSHLKKKVVS 126
           NSHLKKKVVS
Sbjct: 150 NSHLKKKVVS 159

[Close]
BLAST of Clc05G10170 vs. NCBI nr
Match: XP_011652772.1 (LOW QUALITY PROTEIN: transcription factor LAF1 [Cucumis sativus])

HSP 1 Score: 223.8 bits (569), Expect = 8.8e-55
Identity = 109/125 (87.20%), Postives = 113/125 (90.40%), Query Frame = 0 

Query: 8   MESTETEKEKRKKKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCRLRWINY 67
           M   ETEKEK KKKGL SPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCRLRW NY
Sbjct: 1   MGCRETEKEKVKKKGLXSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCRLRWFNY 60

Query: 68  LRPGLKRGMFSQQEEEKILTLHHLLGNKWSKIAQHLVGRTDNEIKNYWNSHLKKKVVSGL 127
           LRPGLKRGMFSQQE+EKILTLH LLGN+WS+IAQHL GRTDNEIKNYWNSHLKKKVV   
Sbjct: 61  LRPGLKRGMFSQQEDEKILTLHRLLGNRWSQIAQHLAGRTDNEIKNYWNSHLKKKVVLNF 120

Query: 128 EDSKS 133
           +D KS
Sbjct: 121 QDFKS 125

[Close]
BLAST of Clc05G10170 vs. ExPASy Swiss-Prot
Match: Q9M0K4 (Transcription factor LAF1 OS=Arabidopsis thaliana OX=3702 GN=LAF1 PE=1 SV=2)

HSP 1 Score: 181.4 bits (459), Expect = 6.6e-45
Identity = 89/123 (72.36%), Postives = 101/123 (82.11%), Query Frame = 0 

Query: 12  ETEKEKRKKKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCRLRWINYLRPG 71
           +T+  +R +KGLWSPEEDEKLRSFIL  GH CWT+VPIKAGL RN KSCRLRWINYLRPG
Sbjct: 3   KTKYGERHRKGLWSPEEDEKLRSFILSYGHSCWTTVPIKAGLQRNGKSCRLRWINYLRPG 62

Query: 72  LKRGMFSQQEEEKILTLHHLLGNKWSKIAQHLVGRTDNEIKNYWNSHLKKKVV--SGLED 131
           LKR M S +EEE ILT H  LGNKWS+IA+ L GRTDNEIKNYW+SHLKKK +    L+D
Sbjct: 63  LKRDMISAEEEETILTFHSSLGNKWSQIAKFLPGRTDNEIKNYWHSHLKKKWLKSQSLQD 122

Query: 132 SKS 133
           +KS
Sbjct: 123 AKS 125

[Close]
BLAST of Clc05G10170 vs. ExPASy Swiss-Prot
Match: P20027 (Myb-related protein Hv33 OS=Hordeum vulgare OX=4513 GN=MYB2 PE=2 SV=3)

HSP 1 Score: 159.5 bits (402), Expect = 2.7e-38
Identity = 73/108 (67.59%), Postives = 89/108 (82.41%), Query Frame = 0 

Query: 16  EKRKKKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCRLRWINYLRPGLKRG 75
           + + +KGLWSPEEDEKL + I+++G GCW+SVP  A L R  KSCRLRWINYLRP LKRG
Sbjct: 11  QPKVRKGLWSPEEDEKLYNHIIRHGVGCWSSVPRLAALNRCGKSCRLRWINYLRPDLKRG 70

Query: 76  MFSQQEEEKILTLHHLLGNKWSKIAQHLVGRTDNEIKNYWNSHLKKKV 124
            FSQQEE+ I+ LH +LGN+WS+IA HL GRTDNEIKN+WNS +KKK+
Sbjct: 71  CFSQQEEDHIVALHQILGNRWSQIASHLPGRTDNEIKNFWNSCIKKKL 118

[Close]
BLAST of Clc05G10170 vs. ExPASy Swiss-Prot
Match: Q8LPH6 (Transcription factor MYB86 OS=Arabidopsis thaliana OX=3702 GN=MYB86 PE=2 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 2.7e-38
Identity = 74/108 (68.52%), Postives = 88/108 (81.48%), Query Frame = 0 

Query: 16  EKRKKKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCRLRWINYLRPGLKRG 75
           +++ +KGLWSPEEDEKL ++I ++GHGCW+SVP  AGL R  KSCRLRWINYLRP LKRG
Sbjct: 9   KQKLRKGLWSPEEDEKLLNYITRHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRG 68

Query: 76  MFSQQEEEKILTLHHLLGNKWSKIAQHLVGRTDNEIKNYWNSHLKKKV 124
            FSQ EE  I+ LH  LGN+WS+IA  L GRTDNEIKN+WNS LKKK+
Sbjct: 69  AFSQDEESLIIELHAALGNRWSQIATRLPGRTDNEIKNFWNSCLKKKL 116

[Close]
BLAST of Clc05G10170 vs. ExPASy Swiss-Prot
Match: Q9LTV4 (Transcription factor MYB10 OS=Arabidopsis thaliana OX=3702 GN=MYB10 PE=2 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.3e-37
Identity = 74/113 (65.49%), Postives = 87/113 (76.99%), Query Frame = 0 

Query: 20  KKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCRLRWINYLRPGLKRGMFSQ 79
           K+G WS EE E+LRSFILKNGH  W S+P  AGL+R  KSCRLRWINYLRPGLKRG F++
Sbjct: 15  KRGPWSDEESERLRSFILKNGHQNWRSLPKLAGLMRCGKSCRLRWINYLRPGLKRGNFTK 74

Query: 80  QEEEKILTLHHLLGNKWSKIAQHLVGRTDNEIKNYWNSHLKKKVVSGLEDSKS 133
           +EE+ I+ LH   GNKWSKIA +  GRTDNEIKN WN+HLKK++V     S S
Sbjct: 75  EEEDTIIHLHQAYGNKWSKIASNFPGRTDNEIKNVWNTHLKKRLVKRSISSSS 127

[Close]
BLAST of Clc05G10170 vs. ExPASy Swiss-Prot
Match: Q9C6U1 (Transcription factor MYB83 OS=Arabidopsis thaliana OX=3702 GN=MYB83 PE=2 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 5.1e-37
Identity = 71/113 (62.83%), Postives = 87/113 (76.99%), Query Frame = 0 

Query: 20  KKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCRLRWINYLRPGLKRGMFSQ 79
           +KGLWSP+EDEKL  ++L NG GCW+ +   AGLLR  KSCRLRWINYLRP LKRG FS 
Sbjct: 31  RKGLWSPDEDEKLIRYMLTNGQGCWSDIARNAGLLRCGKSCRLRWINYLRPDLKRGSFSP 90

Query: 80  QEEEKILTLHHLLGNKWSKIAQHLVGRTDNEIKNYWNSHLKKKVVSGLEDSKS 133
           QEE+ I  LH +LGN+WS+IA  L GRTDNEIKN+WNS LKK++ +   ++ S
Sbjct: 91  QEEDLIFHLHSILGNRWSQIATRLPGRTDNEIKNFWNSTLKKRLKNNSNNNTS 143

[Close]
BLAST of Clc05G10170 vs. ExPASy TrEMBL
Match: A0A1S3AXV7 (transcription factor LAF1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484072 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 5.4e-58
Identity = 114/124 (91.94%), Postives = 117/124 (94.35%), Query Frame = 0 

Query: 2   QRREREMESTETEKEKRKKKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCR 61
           QRREREM   ETEKEK KKKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCR
Sbjct: 30  QRREREMGCRETEKEKVKKKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCR 89

Query: 62  LRWINYLRPGLKRGMFSQQEEEKILTLHHLLGNKWSKIAQHLVGRTDNEIKNYWNSHLKK 121
           LRW NYLRPGLKRGMFSQQE+EKILTLH LLGN+WS+IAQHL GRTDNEIKNYWNSHLKK
Sbjct: 90  LRWFNYLRPGLKRGMFSQQEDEKILTLHRLLGNRWSQIAQHLAGRTDNEIKNYWNSHLKK 149

Query: 122 KVVS 126
           KVVS
Sbjct: 150 KVVS 153

[Close]
BLAST of Clc05G10170 vs. ExPASy TrEMBL
Match: A0A1S3AY85 (transcription factor LAF1-like isoform X4 OS=Cucumis melo OX=3656 GN=LOC103484072 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 5.0e-56
Identity = 114/130 (87.69%), Postives = 117/130 (90.00%), Query Frame = 0 

Query: 2   QRREREMESTETEKEKRKKKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCR 61
           QRREREM   ETEKEK KKKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCR
Sbjct: 30  QRREREMGCRETEKEKVKKKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCR 89

Query: 62  LRWINYLRPGLKRGMFSQQEEEKILTLHHLLGN------KWSKIAQHLVGRTDNEIKNYW 121
           LRW NYLRPGLKRGMFSQQE+EKILTLH LLGN      +WS+IAQHL GRTDNEIKNYW
Sbjct: 90  LRWFNYLRPGLKRGMFSQQEDEKILTLHRLLGNRMMISIRWSQIAQHLAGRTDNEIKNYW 149

Query: 122 NSHLKKKVVS 126
           NSHLKKKVVS
Sbjct: 150 NSHLKKKVVS 159

[Close]
BLAST of Clc05G10170 vs. ExPASy TrEMBL
Match: A0A1S3AYA7 (transcription factor LAF1-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103484072 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 5.0e-56
Identity = 114/130 (87.69%), Postives = 117/130 (90.00%), Query Frame = 0 

Query: 2   QRREREMESTETEKEKRKKKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCR 61
           QRREREM   ETEKEK KKKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCR
Sbjct: 30  QRREREMGCRETEKEKVKKKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCR 89

Query: 62  LRWINYLRPGLKRGMFSQQEEEKILTLHHLLGN------KWSKIAQHLVGRTDNEIKNYW 121
           LRW NYLRPGLKRGMFSQQE+EKILTLH LLGN      +WS+IAQHL GRTDNEIKNYW
Sbjct: 90  LRWFNYLRPGLKRGMFSQQEDEKILTLHRLLGNRMMISIRWSQIAQHLAGRTDNEIKNYW 149

Query: 122 NSHLKKKVVS 126
           NSHLKKKVVS
Sbjct: 150 NSHLKKKVVS 159

[Close]
BLAST of Clc05G10170 vs. ExPASy TrEMBL
Match: A0A1S3AYW8 (transcription factor LAF1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484072 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 5.0e-56
Identity = 114/130 (87.69%), Postives = 117/130 (90.00%), Query Frame = 0 

Query: 2   QRREREMESTETEKEKRKKKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCR 61
           QRREREM   ETEKEK KKKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCR
Sbjct: 30  QRREREMGCRETEKEKVKKKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCR 89

Query: 62  LRWINYLRPGLKRGMFSQQEEEKILTLHHLLGN------KWSKIAQHLVGRTDNEIKNYW 121
           LRW NYLRPGLKRGMFSQQE+EKILTLH LLGN      +WS+IAQHL GRTDNEIKNYW
Sbjct: 90  LRWFNYLRPGLKRGMFSQQEDEKILTLHRLLGNRMMISIRWSQIAQHLAGRTDNEIKNYW 149

Query: 122 NSHLKKKVVS 126
           NSHLKKKVVS
Sbjct: 150 NSHLKKKVVS 159

[Close]
BLAST of Clc05G10170 vs. ExPASy TrEMBL
Match: A0A072W078 (Myb transcription factor OS=Medicago truncatula OX=3880 GN=25485079 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 7.3e-47
Identity = 92/116 (79.31%), Postives = 104/116 (89.66%), Query Frame = 0 

Query: 14  EKEKRK-KKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCRLRWINYLRPGL 73
           EK K K +KGLWSPEED KLR++ILK+GHGCW+SVPIKAGL RN KSCRLRWINYLRPGL
Sbjct: 7   EKTKPKHRKGLWSPEEDHKLRNYILKHGHGCWSSVPIKAGLQRNGKSCRLRWINYLRPGL 66

Query: 74  KRGMFSQQEEEKILTLHHLLGNKWSKIAQHLVGRTDNEIKNYWNSHLKKKVVSGLE 129
           KRG FS+QEEE ILTLHH+LGNKWS+IAQHL GRTDNEIKNYW+S+LKK+V   +E
Sbjct: 67  KRGKFSKQEEETILTLHHMLGNKWSQIAQHLPGRTDNEIKNYWHSYLKKRVAKAME 122

[Close]
BLAST of Clc05G10170 vs. TAIR 10
Match: AT4G25560.1 (myb domain protein 18 )

HSP 1 Score: 181.4 bits (459), Expect = 4.7e-46
Identity = 89/123 (72.36%), Postives = 101/123 (82.11%), Query Frame = 0 

Query: 12  ETEKEKRKKKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCRLRWINYLRPG 71
           +T+  +R +KGLWSPEEDEKLRSFIL  GH CWT+VPIKAGL RN KSCRLRWINYLRPG
Sbjct: 3   KTKYGERHRKGLWSPEEDEKLRSFILSYGHSCWTTVPIKAGLQRNGKSCRLRWINYLRPG 62

Query: 72  LKRGMFSQQEEEKILTLHHLLGNKWSKIAQHLVGRTDNEIKNYWNSHLKKKVV--SGLED 131
           LKR M S +EEE ILT H  LGNKWS+IA+ L GRTDNEIKNYW+SHLKKK +    L+D
Sbjct: 63  LKRDMISAEEEETILTFHSSLGNKWSQIAKFLPGRTDNEIKNYWHSHLKKKWLKSQSLQD 122

Query: 132 SKS 133
           +KS
Sbjct: 123 AKS 125

[Close]
BLAST of Clc05G10170 vs. TAIR 10
Match: AT5G52260.1 (myb domain protein 19 )

HSP 1 Score: 178.7 bits (452), Expect = 3.0e-45
Identity = 84/125 (67.20%), Postives = 101/125 (80.80%), Query Frame = 0 

Query: 8   MESTETEKEKRKKKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCRLRWINY 67
           M  +    ++R++KGLWSPEED+KL+SFIL  GH CWT+VPI AGL RN KSCRLRWINY
Sbjct: 1   MTKSGERPKQRQRKGLWSPEEDQKLKSFILSRGHACWTTVPILAGLQRNGKSCRLRWINY 60

Query: 68  LRPGLKRGMFSQQEEEKILTLHHLLGNKWSKIAQHLVGRTDNEIKNYWNSHLKKKVVSGL 127
           LRPGLKRG FS++EEE ILTLH  LGNKWS+IA++L GRTDNEIKNYW+S+LKK+ +   
Sbjct: 61  LRPGLKRGSFSEEEEETILTLHSSLGNKWSRIAKYLPGRTDNEIKNYWHSYLKKRWLKSQ 120

Query: 128 EDSKS 133
              KS
Sbjct: 121 PQLKS 125

[Close]
BLAST of Clc05G10170 vs. TAIR 10
Match: AT3G48920.1 (myb domain protein 45 )

HSP 1 Score: 170.6 bits (431), Expect = 8.3e-43
Identity = 75/117 (64.10%), Postives = 101/117 (86.32%), Query Frame = 0 

Query: 7   EMESTETEKEKRKKKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCRLRWIN 66
           E  + E + +++++KGLWSPEEDEKLRS +LK GHGCW+++P++AGL RN KSCRLRW+N
Sbjct: 6   EKSNREMKSKEKQRKGLWSPEEDEKLRSHVLKYGHGCWSTIPLQAGLQRNGKSCRLRWVN 65

Query: 67  YLRPGLKRGMFSQQEEEKILTLHHLLGNKWSKIAQHLVGRTDNEIKNYWNSHLKKKV 124
           YLRPGLK+ +F++QEE  +L+LH +LGNKWS+I++ L GRTDNEIKNYW+S+LKK V
Sbjct: 66  YLRPGLKKSLFTKQEETILLSLHSMLGNKWSQISKFLPGRTDNEIKNYWHSNLKKGV 122

[Close]
BLAST of Clc05G10170 vs. TAIR 10
Match: AT3G13890.2 (myb domain protein 26 )

HSP 1 Score: 159.5 bits (402), Expect = 1.9e-39
Identity = 72/110 (65.45%), Postives = 90/110 (81.82%), Query Frame = 0 

Query: 16  EKRKKKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCRLRWINYLRPGLKRG 75
           +++ K+GLWSPEEDEKL ++I   GHGCW+SVP  AGL R  KSCRLRWINYLRP LKRG
Sbjct: 9   KQKVKRGLWSPEEDEKLINYINSYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRG 68

Query: 76  MFSQQEEEKILTLHHLLGNKWSKIAQHLVGRTDNEIKNYWNSHLKKKVVS 126
            FS QE   I+ LH +LGN+W++IA+HL GRTDNE+KN+WNS +KKK++S
Sbjct: 69  SFSPQEAALIIELHSILGNRWAQIAKHLPGRTDNEVKNFWNSSIKKKLMS 118

[Close]
BLAST of Clc05G10170 vs. TAIR 10
Match: AT5G26660.1 (myb domain protein 86 )

HSP 1 Score: 159.5 bits (402), Expect = 1.9e-39
Identity = 74/108 (68.52%), Postives = 88/108 (81.48%), Query Frame = 0 

Query: 16  EKRKKKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCRLRWINYLRPGLKRG 75
           +++ +KGLWSPEEDEKL ++I ++GHGCW+SVP  AGL R  KSCRLRWINYLRP LKRG
Sbjct: 9   KQKLRKGLWSPEEDEKLLNYITRHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRG 68

Query: 76  MFSQQEEEKILTLHHLLGNKWSKIAQHLVGRTDNEIKNYWNSHLKKKV 124
            FSQ EE  I+ LH  LGN+WS+IA  L GRTDNEIKN+WNS LKKK+
Sbjct: 69  AFSQDEESLIIELHAALGNRWSQIATRLPGRTDNEIKNFWNSCLKKKL 116

The following BLAST results are available for this feature:
BLAST of Clc05G10170 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008439218.11.1e-5791.94PREDICTED: transcription factor LAF1-like isoform X2 [Cucumis melo][more]
XP_008439220.11.0e-5587.69PREDICTED: transcription factor LAF1-like isoform X4 [Cucumis melo][more]
XP_008439219.11.0e-5587.69PREDICTED: transcription factor LAF1-like isoform X3 [Cucumis melo][more]
XP_008439216.11.0e-5587.69PREDICTED: transcription factor LAF1-like isoform X1 [Cucumis melo][more]
XP_011652772.18.8e-5587.20LOW QUALITY PROTEIN: transcription factor LAF1 [Cucumis sativus][more]
BLAST of Clc05G10170 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9M0K46.6e-4572.36Transcription factor LAF1 OS=Arabidopsis thaliana OX=3702 GN=LAF1 PE=1 SV=2[more]
P200272.7e-3867.59Myb-related protein Hv33 OS=Hordeum vulgare OX=4513 GN=MYB2 PE=2 SV=3[more]
Q8LPH62.7e-3868.52Transcription factor MYB86 OS=Arabidopsis thaliana OX=3702 GN=MYB86 PE=2 SV=1[more]
Q9LTV41.3e-3765.49Transcription factor MYB10 OS=Arabidopsis thaliana OX=3702 GN=MYB10 PE=2 SV=1[more]
Q9C6U15.1e-3762.83Transcription factor MYB83 OS=Arabidopsis thaliana OX=3702 GN=MYB83 PE=2 SV=1[more]
BLAST of Clc05G10170 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3AXV75.4e-5891.94transcription factor LAF1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC10348407... [more]
A0A1S3AY855.0e-5687.69transcription factor LAF1-like isoform X4 OS=Cucumis melo OX=3656 GN=LOC10348407... [more]
A0A1S3AYA75.0e-5687.69transcription factor LAF1-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC10348407... [more]
A0A1S3AYW85.0e-5687.69transcription factor LAF1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC10348407... [more]
A0A072W0787.3e-4779.31Myb transcription factor OS=Medicago truncatula OX=3880 GN=25485079 PE=4 SV=1[more]
BLAST of Clc05G10170 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G25560.14.7e-4672.36myb domain protein 18 [more]
AT5G52260.13.0e-4567.20myb domain protein 19 [more]
AT3G48920.18.3e-4364.10myb domain protein 45 [more]
AT3G13890.21.9e-3965.45myb domain protein 26 [more]
AT5G26660.11.9e-3968.52myb domain protein 86 [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 1..21
NoneNo IPR availableGENE3D1.10.10.60coord: 12..73
e-value: 2.2E-16
score: 61.4
NoneNo IPR availableGENE3D1.10.10.60coord: 76..123
e-value: 1.3E-20
score: 75.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
NoneNo IPR availablePANTHERPTHR47997MYB DOMAIN PROTEIN 55coord: 8..125
NoneNo IPR availablePANTHERPTHR47997:SF11MYB TRANSCRIPTION FACTORcoord: 8..125
IPR001005SANT/Myb domainSMARTSM00717santcoord: 20..70
e-value: 8.2E-11
score: 51.9
coord: 73..121
e-value: 6.4E-15
score: 65.6
IPR001005SANT/Myb domainPROSITEPS50090MYB_LIKEcoord: 69..119
score: 10.266769
IPR001005SANT/Myb domainPROSITEPS50090MYB_LIKEcoord: 16..68
score: 9.964848
IPR001005SANT/Myb domainCDDcd00167SANTcoord: 24..68
e-value: 1.2498E-7
score: 43.333
IPR001005SANT/Myb domainCDDcd00167SANTcoord: 77..119
e-value: 2.02118E-10
score: 50.6518
IPR017930Myb domainPFAMPF00249Myb_DNA-bindingcoord: 21..68
e-value: 4.3E-11
score: 42.8
coord: 74..119
e-value: 2.0E-15
score: 56.7
IPR017930Myb domainPROSITEPS51294HTH_MYBcoord: 69..123
score: 25.412794
IPR017930Myb domainPROSITEPS51294HTH_MYBcoord: 16..68
score: 17.651699
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 18..115

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc05G10170.2Clc05G10170.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005506 iron ion binding
molecular_function GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen