Clc05G09190 (gene) Watermelon (cordophanus) v2

Overview
NameClc05G09190
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
LocationClcChr05: 7291919 .. 7292403 (-)
RNA-Seq ExpressionClc05G09190
SyntenyClc05G09190
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTCCCTCAAGATTTTGCTTGTGTTTAAGCTCTTAGTTTTCTTTGCCTTGCTTCTCACTACCTCTCCTATTTCTGCCACTAACAATGCTCCTCCTATTCGTAAGTTGTCTTTTTCCCTTATCGTCTCATGTTTCCTGACTATAACTCTTTTTTTCTATGAGTTTGATGTAAACTTGAATTCAAATAAATTTGTAGTTTGTTATATGTAGTAATTTCATTGTTAAAATAAGAAACTAGCTACACATGAATAAAAATGAAAAAAAAAAAATGTTCATGAAATCACTACTTTTCTGATTTCTCTTCAAATTAAAAGAGTATGTCAACCAAGTTAATGTGGGGTTTTAATTTTGATATTTAGTATGGAATTTCAGGGAAGATGGGTGTGGAGTACAAAAATGTTGGGAAGAATGTGGTGGTAGCAGAACCAAAGAGACCACTTTTTGCTGATGCCCCTTGGGGGGGTGGTTATATCAACCCTTGA

mRNA sequence

ATGGCGTCCCTCAAGATTTTGCTTGTGTTTAAGCTCTTAGTTTTCTTTGCCTTGCTTCTCACTACCTCTCCTATTTCTGCCACTAACAATGCTCCTCCTATTCGGAAGATGGGTGTGGAGTACAAAAATGTTGGGAAGAATGTGGTGGTAGCAGAACCAAAGAGACCACTTTTTGCTGATGCCCCTTGGGGGGGTGGTTATATCAACCCTTGA

Coding sequence (CDS)

ATGGCGTCCCTCAAGATTTTGCTTGTGTTTAAGCTCTTAGTTTTCTTTGCCTTGCTTCTCACTACCTCTCCTATTTCTGCCACTAACAATGCTCCTCCTATTCGGAAGATGGGTGTGGAGTACAAAAATGTTGGGAAGAATGTGGTGGTAGCAGAACCAAAGAGACCACTTTTTGCTGATGCCCCTTGGGGGGGTGGTTATATCAACCCTTGA

Protein sequence

MASLKILLVFKLLVFFALLLTTSPISATNNAPPIRKMGVEYKNVGKNVVVAEPKRPLFADAPWGGGYINP
Homology
BLAST of Clc05G09190 vs. NCBI nr
Match: KAG6600177.1 (hypothetical protein SDJN03_05410, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 84.7 bits (208), Expect = 3.4e-13
Identity = 48/71 (67.61%), Postives = 54/71 (76.06%), Query Frame = 0

Query: 1  MASLKIL-LVFKLLVFFALLLTTSPISATNNAPPIRKMGVEYKNVGKNVVVAEPKRPLFA 60
          M SLK++  V KLLV FALLL  SPISA +N P IRKMG+EYK VGK VVVA+P R L A
Sbjct: 1  MVSLKMISFVLKLLVCFALLLIASPISAMDNTPRIRKMGMEYKLVGKAVVVAKPVRQLSA 60

Query: 61 DAPWGGGYINP 71
          D+PWGGGY  P
Sbjct: 61 DSPWGGGYHIP 71

BLAST of Clc05G09190 vs. NCBI nr
Match: KAG7030840.1 (hypothetical protein SDJN02_04877, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 80.1 bits (196), Expect = 8.4e-12
Identity = 44/64 (68.75%), Postives = 48/64 (75.00%), Query Frame = 0

Query: 7   LLVFKLLVFFALLLTTSPISATNNAPPIRKMGVEYKNVGKNVVVAEPKRPLFADAPWGGG 66
           LL   LLV FALLL  SPISA +N P IRKMG+EYK VGK VVVA+P R L AD+PWGGG
Sbjct: 246 LLGILLLVCFALLLIASPISAMDNTPRIRKMGMEYKLVGKAVVVAKPVRQLSADSPWGGG 305

Query: 67  YINP 71
           Y  P
Sbjct: 306 YHIP 309

BLAST of Clc05G09190 vs. NCBI nr
Match: KAA0067663.1 (hypothetical protein E6C27_scaffold70G00320 [Cucumis melo var. makuwa] >TYK23667.1 hypothetical protein E5676_scaffold577G00330 [Cucumis melo var. makuwa])

HSP 1 Score: 64.7 bits (156), Expect = 3.6e-07
Identity = 38/72 (52.78%), Postives = 47/72 (65.28%), Query Frame = 0

Query: 4  LKILLVFKLLVFFALL-LTTSPISATNN-----APPIRKMGVEYKNVGKNVVVAEPKRPL 63
          +KI L+ KLL F  LL + ++ +SATNN      PPIRKMGVEYK   K VVV +  RP 
Sbjct: 6  MKISLMLKLLFFANLLFIASTTVSATNNIPLLHKPPIRKMGVEYKKGEKAVVVPKVNRPT 65

Query: 64 FADAPWGGGYIN 70
            D PWGGGY++
Sbjct: 66 SDDVPWGGGYVH 77

BLAST of Clc05G09190 vs. NCBI nr
Match: KAE8650427.1 (hypothetical protein Csa_010020 [Cucumis sativus])

HSP 1 Score: 57.8 bits (138), Expect = 4.4e-05
Identity = 36/71 (50.70%), Postives = 44/71 (61.97%), Query Frame = 0

Query: 4  LKILLVFKLLVFFALL-LTTSPISATNN-----APPIRKMGVEYKNVGKNVVVAEPKRPL 63
          +KI L+ KLL F  LL +  + ISATNN      PPIRKM V Y+   K VVV +  +P 
Sbjct: 10 MKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVGYRKGEKAVVVPKVYKPT 69

Query: 64 FADAPWGGGYI 69
           AD PWGGGY+
Sbjct: 70 SADFPWGGGYV 80

BLAST of Clc05G09190 vs. ExPASy TrEMBL
Match: A0A5D3DJ60 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G00330 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.8e-07
Identity = 38/72 (52.78%), Postives = 47/72 (65.28%), Query Frame = 0

Query: 4  LKILLVFKLLVFFALL-LTTSPISATNN-----APPIRKMGVEYKNVGKNVVVAEPKRPL 63
          +KI L+ KLL F  LL + ++ +SATNN      PPIRKMGVEYK   K VVV +  RP 
Sbjct: 6  MKISLMLKLLFFANLLFIASTTVSATNNIPLLHKPPIRKMGVEYKKGEKAVVVPKVNRPT 65

Query: 64 FADAPWGGGYIN 70
            D PWGGGY++
Sbjct: 66 SDDVPWGGGYVH 77

BLAST of Clc05G09190 vs. ExPASy TrEMBL
Match: A0A0A0L8B2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175600 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.2e-05
Identity = 36/71 (50.70%), Postives = 44/71 (61.97%), Query Frame = 0

Query: 4  LKILLVFKLLVFFALL-LTTSPISATNN-----APPIRKMGVEYKNVGKNVVVAEPKRPL 63
          +KI L+ KLL F  LL +  + ISATNN      PPIRKM V Y+   K VVV +  +P 
Sbjct: 6  MKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVGYRKGEKAVVVPKVYKPT 65

Query: 64 FADAPWGGGYI 69
           AD PWGGGY+
Sbjct: 66 SADFPWGGGYV 76

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6600177.13.4e-1367.61hypothetical protein SDJN03_05410, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7030840.18.4e-1268.75hypothetical protein SDJN02_04877, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAA0067663.13.6e-0752.78hypothetical protein E6C27_scaffold70G00320 [Cucumis melo var. makuwa] >TYK23667... [more]
KAE8650427.14.4e-0550.70hypothetical protein Csa_010020 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DJ601.8e-0752.78Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0L8B22.2e-0550.70Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175600 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc05G09190.1Clc05G09190.1mRNA