Clc05G09150 (gene) Watermelon (cordophanus) v2
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Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATCAGGATATTGAAAAAGCCTTCATCGATTATTTCCTAGATATCTACACCAAGAGGGAAGATAGTCCTTGGATGATTGGCAATCTAAACTGGAGGGTAATTGATAACGATCTTGCAGCCTCCCTTACTACCCCCTTCACGGATGCCGAAGTCGTAACTGCTTATAGGCTTTGGGTCACAATAAAACTCCGAGACCTAACGGTTTTACCATGGAATTTTTCAAAAATTAGTATTGGAATATTTTCCGCCCCAACCTTATGAACATGTTCCACGACTTTTTCCAAAATAATATTGTGAACAGAGCAATGAATGCTACTTTCATAGCATTGATTCCTAAAAAGTTTGCCCCCCCAAAGAGTCAATGACTTCCGCCCCATAAGTCTCACCACGAGTATATACAAATTACTGGCTAAAGTACTTGCAGAGTGCCTTAAAAGAGTTCTCCCCTACACAATATCTCAACACCAATCTGCCTTTGTTAATGAAAGGCAAATCACTGATCCCATCCTTATCGTAAACGAGGTTGTGGACTATTAGGGTGTCAGCAAATCAAAAGGTTTCATCAGTAAGCTTGACATAGAAAAGGCTTTCGATAAAATCAGATGGAATTTTATCCTATCGGTGATGAAACTTAAAGGCTTCAGCAAATGGATAAATTGGATAAACGCTTGCTTATCAACGATAAACTATTATATCCTACTAAATGGGATACCCAGGGGTTTTATACAAGCCACGAGATGAGTTAGACAAGGAGATCCTCTCTCACCGTTCTTGTTTATACTTGCTATGGACTACCTATCCAGCCTGATTGAAGAAGCTCAAAGAAAGAATCTTATTAGAGGTTTTGAAATCAACCAAAGAAATCAATACATCTCCCATCTATTATTTGCCGATGATATTCTCCTTTTCTTAAAGGCTAGTGTCGAACATCTCAAGAATCTCAACTTCATTGTCAAGTCTTTTGAACAAGCCTCGGGCCTAAAAGTTAATCTCCATAAATCTTGTATAGCTGGGGTCAATGTTGAAGATGATCTTATGCAACAAGCTGAAGACATATAGATGGATCAGGATATTGAAAAAGCCTTCATCGATTATTTCCTAGATATCTACACCAAGAGGGAAGATAGTCCTTGGATGATTGGCAATCTAAACTGGAGGGTAATTGATAACGATCTTGCAGCCTCCCTTACTACCCCCTTCACGGATGCCGAAGTCGTAACTGCTTATAGGCTTTGGGTCACAATAAAACTCCGAGACCTAACGGCTAGTGTCGAACATCTCAAGAATCTCAACTTCATTGTCAAGTCTTTTGAACAAGCCTCGGGCCTAAAAGTTAATCTCCATAAATCTTGTATAGCTGGGGTCAATGTTGAAGATGATCTTATGCAACAAGCTGAAGACATATAG ATGGATCAGGATATTGAAAAAGCCTTCATCGATTATTTCCTAGATATCTACACCAAGAGGGAAGATAGTCCTTGGATGATTGGCAATCTAAACTGGAGGGTAATTGATAACGATCTTGCAGCCTCCCTTACTACCCCCTTCACGGATGCCGAAGTCGTAACTGCTTATAGGCTTTGGGTCACAATAAAACTCCGAGACCTAACGGCTAGTGTCGAACATCTCAAGAATCTCAACTTCATTGTCAAGTCTTTTGAACAAGCCTCGGGCCTAAAAGTTAATCTCCATAAATCTTGTATAGCTGGGGTCAATGTTGAAGATGATCTTATGCAACAAGCTGAAGACATATAG MDQDIEKAFIDYFLDIYTKREDSPWMIGNLNWRVIDNDLAASLTTPFTDAEVVTAYRLWVTIKLRDLTASVEHLKNLNFIVKSFEQASGLKVNLHKSCIAGVNVEDDLMQQAEDI Homology
BLAST of Clc05G09150 vs. NCBI nr
Match: MCH79402.1 (LINE-1 reverse transcriptase like [Trifolium medium]) HSP 1 Score: 54.3 bits (129), Expect = 8.1e-04 Identity = 26/44 (59.09%), Postives = 32/44 (72.73%), Query Frame = 0
BLAST of Clc05G09150 vs. ExPASy TrEMBL
Match: A0A392LWR3 (LINE-1 reverse transcriptase like OS=Trifolium medium OX=97028 GN=A2U01_0000151 PE=4 SV=1) HSP 1 Score: 54.3 bits (129), Expect = 3.9e-04 Identity = 26/44 (59.09%), Postives = 32/44 (72.73%), Query Frame = 0
BLAST of Clc05G09150 vs. ExPASy TrEMBL
Match: A0A5D3BVB5 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G00080 PE=4 SV=1) HSP 1 Score: 53.9 bits (128), Expect = 5.1e-04 Identity = 24/63 (38.10%), Postives = 37/63 (58.73%), Query Frame = 0
BLAST of Clc05G09150 vs. ExPASy TrEMBL
Match: A0A2Z6PCJ8 (Reverse transcriptase domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_324640 PE=4 SV=1) HSP 1 Score: 53.1 bits (126), Expect = 8.7e-04 Identity = 25/46 (54.35%), Postives = 32/46 (69.57%), Query Frame = 0
BLAST of Clc05G09150 vs. ExPASy TrEMBL
Match: A0A392LYH2 (LINE-1 reverse transcriptase like (Fragment) OS=Trifolium medium OX=97028 GN=A2U01_0000775 PE=4 SV=1) HSP 1 Score: 53.1 bits (126), Expect = 8.7e-04 Identity = 25/46 (54.35%), Postives = 32/46 (69.57%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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