Clc05G09150 (gene) Watermelon (cordophanus) v2

Overview
NameClc05G09150
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionLINE-1 reverse transcriptase like
LocationClcChr05: 7285164 .. 7286225 (-)
RNA-Seq ExpressionClc05G09150
SyntenyClc05G09150
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCAGGATATTGAAAAAGCCTTCATCGATTATTTCCTAGATATCTACACCAAGAGGGAAGATAGTCCTTGGATGATTGGCAATCTAAACTGGAGGGTAATTGATAACGATCTTGCAGCCTCCCTTACTACCCCCTTCACGGATGCCGAAGTCGTAACTGCTTATAGGCTTTGGGTCACAATAAAACTCCGAGACCTAACGGTTTTACCATGGAATTTTTCAAAAATTAGTATTGGAATATTTTCCGCCCCAACCTTATGAACATGTTCCACGACTTTTTCCAAAATAATATTGTGAACAGAGCAATGAATGCTACTTTCATAGCATTGATTCCTAAAAAGTTTGCCCCCCCAAAGAGTCAATGACTTCCGCCCCATAAGTCTCACCACGAGTATATACAAATTACTGGCTAAAGTACTTGCAGAGTGCCTTAAAAGAGTTCTCCCCTACACAATATCTCAACACCAATCTGCCTTTGTTAATGAAAGGCAAATCACTGATCCCATCCTTATCGTAAACGAGGTTGTGGACTATTAGGGTGTCAGCAAATCAAAAGGTTTCATCAGTAAGCTTGACATAGAAAAGGCTTTCGATAAAATCAGATGGAATTTTATCCTATCGGTGATGAAACTTAAAGGCTTCAGCAAATGGATAAATTGGATAAACGCTTGCTTATCAACGATAAACTATTATATCCTACTAAATGGGATACCCAGGGGTTTTATACAAGCCACGAGATGAGTTAGACAAGGAGATCCTCTCTCACCGTTCTTGTTTATACTTGCTATGGACTACCTATCCAGCCTGATTGAAGAAGCTCAAAGAAAGAATCTTATTAGAGGTTTTGAAATCAACCAAAGAAATCAATACATCTCCCATCTATTATTTGCCGATGATATTCTCCTTTTCTTAAAGGCTAGTGTCGAACATCTCAAGAATCTCAACTTCATTGTCAAGTCTTTTGAACAAGCCTCGGGCCTAAAAGTTAATCTCCATAAATCTTGTATAGCTGGGGTCAATGTTGAAGATGATCTTATGCAACAAGCTGAAGACATATAG

mRNA sequence

ATGGATCAGGATATTGAAAAAGCCTTCATCGATTATTTCCTAGATATCTACACCAAGAGGGAAGATAGTCCTTGGATGATTGGCAATCTAAACTGGAGGGTAATTGATAACGATCTTGCAGCCTCCCTTACTACCCCCTTCACGGATGCCGAAGTCGTAACTGCTTATAGGCTTTGGGTCACAATAAAACTCCGAGACCTAACGGCTAGTGTCGAACATCTCAAGAATCTCAACTTCATTGTCAAGTCTTTTGAACAAGCCTCGGGCCTAAAAGTTAATCTCCATAAATCTTGTATAGCTGGGGTCAATGTTGAAGATGATCTTATGCAACAAGCTGAAGACATATAG

Coding sequence (CDS)

ATGGATCAGGATATTGAAAAAGCCTTCATCGATTATTTCCTAGATATCTACACCAAGAGGGAAGATAGTCCTTGGATGATTGGCAATCTAAACTGGAGGGTAATTGATAACGATCTTGCAGCCTCCCTTACTACCCCCTTCACGGATGCCGAAGTCGTAACTGCTTATAGGCTTTGGGTCACAATAAAACTCCGAGACCTAACGGCTAGTGTCGAACATCTCAAGAATCTCAACTTCATTGTCAAGTCTTTTGAACAAGCCTCGGGCCTAAAAGTTAATCTCCATAAATCTTGTATAGCTGGGGTCAATGTTGAAGATGATCTTATGCAACAAGCTGAAGACATATAG

Protein sequence

MDQDIEKAFIDYFLDIYTKREDSPWMIGNLNWRVIDNDLAASLTTPFTDAEVVTAYRLWVTIKLRDLTASVEHLKNLNFIVKSFEQASGLKVNLHKSCIAGVNVEDDLMQQAEDI
Homology
[Close]
BLAST of Clc05G09150 vs. NCBI nr
Match: MCH79402.1 (LINE-1 reverse transcriptase like [Trifolium medium])

HSP 1 Score: 54.3 bits (129), Expect = 8.1e-04
Identity = 26/44 (59.09%), Postives = 32/44 (72.73%), Query Frame = 0 

Query: 69  ASVEHLKNLNFIVKSFEQASGLKVNLHKSCIAGVNVEDDLMQQA 113
           ASVE+L  L  I++ FE ASGLKVN  KSC+ G+NV DD M+ A
Sbjct: 287 ASVENLWTLKAILRGFELASGLKVNFWKSCLMGINVSDDFMEMA 330

[Close]
BLAST of Clc05G09150 vs. ExPASy TrEMBL
Match: A0A392LWR3 (LINE-1 reverse transcriptase like OS=Trifolium medium OX=97028 GN=A2U01_0000151 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.9e-04
Identity = 26/44 (59.09%), Postives = 32/44 (72.73%), Query Frame = 0 

Query: 69  ASVEHLKNLNFIVKSFEQASGLKVNLHKSCIAGVNVEDDLMQQA 113
           ASVE+L  L  I++ FE ASGLKVN  KSC+ G+NV DD M+ A
Sbjct: 287 ASVENLWTLKAILRGFELASGLKVNFWKSCLMGINVSDDFMEMA 330

[Close]
BLAST of Clc05G09150 vs. ExPASy TrEMBL
Match: A0A5D3BVB5 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G00080 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 5.1e-04
Identity = 24/63 (38.10%), Postives = 37/63 (58.73%), Query Frame = 0 

Query: 5   IEKAFIDYFLDIYTKREDSPWMIGNLNWRVIDNDLAASLTTPFTDAEVVTAYRLWVTIKL 64
           IEKAF+D+F +IY    +  W+I NL+W +I N     L  PFT++E+  A++ +   K 
Sbjct: 184 IEKAFLDHFEEIYRNNCEDLWLIDNLHWSIISNKEREDLCKPFTESEIQVAFKDFTNNKF 243

Query: 65  RDL 68
             L
Sbjct: 244 SGL 246

[Close]
BLAST of Clc05G09150 vs. ExPASy TrEMBL
Match: A0A2Z6PCJ8 (Reverse transcriptase domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_324640 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 8.7e-04
Identity = 25/46 (54.35%), Postives = 32/46 (69.57%), Query Frame = 0 

Query: 69  ASVEHLKNLNFIVKSFEQASGLKVNLHKSCIAGVNVEDDLMQQAED 115
           A+VE+L  L  I++ FE ASGLKVN  KSC+ G+NV DD +  A D
Sbjct: 77  ATVENLWTLKAILRGFEMASGLKVNFWKSCLIGINVNDDFLGMATD 122

[Close]
BLAST of Clc05G09150 vs. ExPASy TrEMBL
Match: A0A392LYH2 (LINE-1 reverse transcriptase like (Fragment) OS=Trifolium medium OX=97028 GN=A2U01_0000775 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 8.7e-04
Identity = 25/46 (54.35%), Postives = 32/46 (69.57%), Query Frame = 0 

Query: 69  ASVEHLKNLNFIVKSFEQASGLKVNLHKSCIAGVNVEDDLMQQAED 115
           A+VE+L  L  +++ FE ASGLKVN  KSC+ GVNV  D M+ A D
Sbjct: 821 ATVENLWVLKAVLRGFEMASGLKVNFWKSCVMGVNVHSDFMEMASD 866

The following BLAST results are available for this feature:
BLAST of Clc05G09150 vs. NCBI nr
Match NameE-valueIdentityDescription
MCH79402.18.1e-0459.09LINE-1 reverse transcriptase like [Trifolium medium][more]
BLAST of Clc05G09150 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc05G09150 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A392LWR33.9e-0459.09LINE-1 reverse transcriptase like OS=Trifolium medium OX=97028 GN=A2U01_0000151 ... [more]
A0A5D3BVB55.1e-0438.10LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A2Z6PCJ88.7e-0454.35Reverse transcriptase domain-containing protein OS=Trifolium subterraneum OX=390... [more]
A0A392LYH28.7e-0454.35LINE-1 reverse transcriptase like (Fragment) OS=Trifolium medium OX=97028 GN=A2U... [more]
BLAST of Clc05G09150 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc05G09150.1Clc05G09150.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane