Clc05G09140 (gene) Watermelon (cordophanus) v2

Overview
NameClc05G09140
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionLINE-1 retrotransposable element ORF2 protein
LocationClcChr05: 7284401 .. 7285066 (-)
RNA-Seq ExpressionClc05G09140
SyntenyClc05G09140
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAAAAAGCTTGACTCCTGGAAATTTGCATACATCTTTAAAGGAGGCAGACTTACACTAATACAAGCGGTGCTCTCTAGTCTTCCCACGTACTACCTATCTGTCTTCAAAGCACCCAGCTCGATCTACAAAGACATTGAGAAGATATTGTGGAATTTTTTGTGGAAAGGCTCCGACAATTGTAGCGGCTCGCATCTTGTTAGATGGGACATTGTTACTCTCCCAAAAGAACATGGTGGACTTGGCATTGATAGAATTAAAATCTCCAATGAAGCCCTCCTTTGTAAGTGGATATGGAGATACATAAAGGAAAAGGACAGCCTTTGGAGAAATCTTATCGACGCAAAATATAGCTGCAAACACCCCGAGAATATCCCTGATATGTGCAAATACAGTAGCTCAAAGGCCCTTTGGTTCCATATATCCAAATTTGAGAATATGCTCCGGAACGGAAACAACACCATGTGTTGGCTCCATCCTTGGAATTCAGATGAGAAATTATATCAGGTATTCCCCAGATTTTTCGCTCTTGCCATGGATAAATTGATCAATGTTGCAGATGTCTGGAAGGAGGATTCTCGCGAATGGATCTTGACTTTTCGAAGACCTCTGCTCAATCATGCGAAAGACTTATGGAACCAAATATCTACTAATTGGATGTAG

mRNA sequence

ATGGAAAAAAAGCTTGACTCCTGGAAATTTGCATACATCTTTAAAGGAGGCAGACTTACACTAATACAAGCGGTGCTCTCTAGTCTTCCCACGTACTACCTATCTGTCTTCAAAGCACCCAGCTCGATCTACAAAGACATTGAGAAGATATTGTGGAATTTTTTGTGGAAAGGCTCCGACAATTGTAGCGGCTCGCATCTTGTTAGATGGGACATTGTTACTCTCCCAAAAGAACATGGTGGACTTGGCATTGATAGAATTAAAATCTCCAATGAAGCCCTCCTTTGTAAGTGGATATGGAGATACATAAAGGAAAAGGACAGCCTTTGGAGAAATCTTATCGACGCAAAATATAGCTGCAAACACCCCGAGAATATCCCTGATATGTGCAAATACAGTAGCTCAAAGGCCCTTTGGTTCCATATATCCAAATTTGAGAATATGCTCCGGAACGGAAACAACACCATGTGTTGGCTCCATCCTTGGAATTCAGATGAGAAATTATATCAGGTATTCCCCAGATTTTTCGCTCTTGCCATGGATAAATTGATCAATGTTGCAGATGTCTGGAAGGAGGATTCTCGCGAATGGATCTTGACTTTTCGAAGACCTCTGCTCAATCATGCGAAAGACTTATGGAACCAAATATCTACTAATTGGATGTAG

Coding sequence (CDS)

ATGGAAAAAAAGCTTGACTCCTGGAAATTTGCATACATCTTTAAAGGAGGCAGACTTACACTAATACAAGCGGTGCTCTCTAGTCTTCCCACGTACTACCTATCTGTCTTCAAAGCACCCAGCTCGATCTACAAAGACATTGAGAAGATATTGTGGAATTTTTTGTGGAAAGGCTCCGACAATTGTAGCGGCTCGCATCTTGTTAGATGGGACATTGTTACTCTCCCAAAAGAACATGGTGGACTTGGCATTGATAGAATTAAAATCTCCAATGAAGCCCTCCTTTGTAAGTGGATATGGAGATACATAAAGGAAAAGGACAGCCTTTGGAGAAATCTTATCGACGCAAAATATAGCTGCAAACACCCCGAGAATATCCCTGATATGTGCAAATACAGTAGCTCAAAGGCCCTTTGGTTCCATATATCCAAATTTGAGAATATGCTCCGGAACGGAAACAACACCATGTGTTGGCTCCATCCTTGGAATTCAGATGAGAAATTATATCAGGTATTCCCCAGATTTTTCGCTCTTGCCATGGATAAATTGATCAATGTTGCAGATGTCTGGAAGGAGGATTCTCGCGAATGGATCTTGACTTTTCGAAGACCTCTGCTCAATCATGCGAAAGACTTATGGAACCAAATATCTACTAATTGGATGTAG

Protein sequence

MEKKLDSWKFAYIFKGGRLTLIQAVLSSLPTYYLSVFKAPSSIYKDIEKILWNFLWKGSDNCSGSHLVRWDIVTLPKEHGGLGIDRIKISNEALLCKWIWRYIKEKDSLWRNLIDAKYSCKHPENIPDMCKYSSSKALWFHISKFENMLRNGNNTMCWLHPWNSDEKLYQVFPRFFALAMDKLINVADVWKEDSREWILTFRRPLLNHAKDLWNQISTNWM
Homology
BLAST of Clc05G09140 vs. NCBI nr
Match: TYK00493.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 239.6 bits (610), Expect = 2.6e-59
Identity = 114/227 (50.22%), Postives = 150/227 (66.08%), Query Frame = 0

Query: 1    MEKKLDSWKFAYIFKGGRLTLIQAVLSSLPTYYLSVFKAPSSIYKDIEKILWNFLWKGSD 60
            ++KKL +WK+A+I KGGRLTLI++ LSSLP Y LSVF+APSS YK+IEK+  NFLWKGS 
Sbjct: 1346 IQKKLSNWKYAHISKGGRLTLIKSTLSSLPIYKLSVFQAPSSTYKNIEKLWRNFLWKGSC 1405

Query: 61   NCSGSHLVRWDIVTLPKEHGGLGIDRIKISNEALLCKWIWRYIKEKDSLWRNLIDAKYSC 120
               GSHL+ W IVT PKE GGLGI R++++N+ALL KW+WRY  E +SLWR LI  KY  
Sbjct: 1406 GLKGSHLINWSIVTKPKEEGGLGISRLQVTNQALLSKWLWRYYSEPNSLWRRLIHIKYKG 1465

Query: 121  KHPENIPDMCKYSSSKALW----FHISKFENM----LRNGNNTMCWLHPWNSDEKLYQVF 180
            KHP ++P     SSSKA W     +I  F++     L NG+    W   W+ +  L   +
Sbjct: 1466 KHPGDLPSNISSSSSKAPWRSIINNIDWFKSNQGWDLNNGDQISFWYSNWSPEGCLSTAY 1525

Query: 181  PRFFALAMDKLINVADVWKEDSREWILTFRRPLLNHAKDLWNQISTN 220
            PR FAL+MDK  ++ DVW  ++ +W +TFRR L +     W +I  N
Sbjct: 1526 PRLFALSMDKESSIKDVWNSNNNQWEITFRRKLNDRELSTWQKILEN 1572

BLAST of Clc05G09140 vs. NCBI nr
Match: TYK05690.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 234.2 bits (596), Expect = 1.1e-57
Identity = 112/227 (49.34%), Postives = 148/227 (65.20%), Query Frame = 0

Query: 1    MEKKLDSWKFAYIFKGGRLTLIQAVLSSLPTYYLSVFKAPSSIYKDIEKILWNFLWKGSD 60
            ++KKL +WK+A+I KGGRLTLI++ LSSLP Y LSVF+A SS YK+IEK+  NFLWKGS 
Sbjct: 934  IQKKLSNWKYAHISKGGRLTLIKSTLSSLPIYQLSVFQASSSTYKNIEKLWRNFLWKGSC 993

Query: 61   NCSGSHLVRWDIVTLPKEHGGLGIDRIKISNEALLCKWIWRYIKEKDSLWRNLIDAKYSC 120
               GSHL+ W IVT PKE GGLGI R++I+N+ALL KW+WRY  E +SLWR LI  KY  
Sbjct: 994  GSKGSHLINWSIVTKPKEEGGLGISRLQITNQALLSKWLWRYYSEPNSLWRRLIHIKYQG 1053

Query: 121  KHPENIPDMCKYSSSKALW----FHISKFENM----LRNGNNTMCWLHPWNSDEKLYQVF 180
            KHP ++P     SSSKA W     +I  F+      L NG+    W   W+ +  L+  +
Sbjct: 1054 KHPGDLPSNISSSSSKAPWRSIINNIEWFKRNQGWDLNNGDQISFWFSNWSPEGCLFTAY 1113

Query: 181  PRFFALAMDKLINVADVWKEDSREWILTFRRPLLNHAKDLWNQISTN 220
             R FAL++DK  ++ DVW  ++ +W +TFRR L +     W +I  N
Sbjct: 1114 SRLFALSIDKESSIKDVWNSNNNQWEITFRRKLNDREISTWQRILEN 1160

BLAST of Clc05G09140 vs. NCBI nr
Match: TYK05808.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 226.5 bits (576), Expect = 2.3e-55
Identity = 110/227 (48.46%), Postives = 145/227 (63.88%), Query Frame = 0

Query: 1    MEKKLDSWKFAYIFKGGRLTLIQAVLSSLPTYYLSVFKAPSSIYKDIEKILWNFLWKGSD 60
            ++KKL++WK+A+I KGGRLTLI++ LSSL  Y LSVF+AP S YK+IEK+  NFLWKGS 
Sbjct: 1180 IQKKLNNWKYAHISKGGRLTLIKSTLSSLSIYQLSVFQAPPSTYKNIEKLWRNFLWKGSF 1239

Query: 61   NCSGSHLVRWDIVTLPKEHGGLGIDRIKISNEALLCKWIWRYIKEKDSLWRNLIDAKYSC 120
               GSHL+ W IVT  KE GGLGI R+++ N+ALL KW+WRY  E +SLWR LI  KY  
Sbjct: 1240 GLKGSHLINWSIVTKLKEEGGLGISRLQVINQALLSKWLWRYYSEPNSLWRRLIHIKYKG 1299

Query: 121  KHPENIPDMCKYSSSKALW----FHISKFENM----LRNGNNTMCWLHPWNSDEKLYQVF 180
            KHP +IP     SSSKA W     +I  F++     L N +    W   W+ +  L   +
Sbjct: 1300 KHPGDIPSNISSSSSKAPWKSIINNIDWFKSNQGWDLNNEDQISFWYSNWSPEGCLSTAY 1359

Query: 181  PRFFALAMDKLINVADVWKEDSREWILTFRRPLLNHAKDLWNQISTN 220
            PR FAL++DK  ++ DVW  ++ +W +TFRR L +     W  I  N
Sbjct: 1360 PRLFALSIDKKSSIKDVWNSNNNQWEITFRRKLNDRELSTWQNILEN 1406

BLAST of Clc05G09140 vs. NCBI nr
Match: KAA0058554.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK01631.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 224.6 bits (571), Expect = 8.7e-55
Identity = 109/224 (48.66%), Postives = 142/224 (63.39%), Query Frame = 0

Query: 4   KLDSWKFAYIFKGGRLTLIQAVLSSLPTYYLSVFKAPSSIYKDIEKILWNFLWKGSDNCS 63
           +L++WK+A+I KGGRLTLI++ LSSLP Y LSVF+APSS YK+I+K   NFLWKGS    
Sbjct: 576 ELNNWKYAHISKGGRLTLIKSTLSSLPIYQLSVFQAPSSTYKNIKKSWRNFLWKGSFGLK 635

Query: 64  GSHLVRWDIVTLPKEHGGLGIDRIKISNEALLCKWIWRYIKEKDSLWRNLIDAKYSCKHP 123
           GSHL+ W  VT PKE GGLGI R++++N+ALL K +WRY  E +SLWR LI  KY  KHP
Sbjct: 636 GSHLINWSKVTKPKEEGGLGISRLQVTNQALLSKSLWRYYSEPNSLWRRLIHIKYKGKHP 695

Query: 124 ENIPDMCKYSSSKALWFHI--------SKFENMLRNGNNTMCWLHPWNSDEKLYQVFPRF 183
            +IP     SSSKA W  I        S     L NG+    W   W+ +  L   +PR 
Sbjct: 696 GDIPSNISSSSSKAPWRSIINNIDWFKSNHGWDLNNGDQISFWYSNWSQEGCLSTAYPRL 755

Query: 184 FALAMDKLINVADVWKEDSREWILTFRRPLLNHAKDLWNQISTN 220
           FAL++DK  ++ DVW  ++ +W +TFRR L +     W +I  N
Sbjct: 756 FALSLDKESSIKDVWNSNNNQWEITFRRKLNDRELSTWEKILEN 799

BLAST of Clc05G09140 vs. NCBI nr
Match: TYJ99315.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 215.7 bits (548), Expect = 4.0e-52
Identity = 103/224 (45.98%), Postives = 139/224 (62.05%), Query Frame = 0

Query: 1    MEKKLDSWKFAYIFKGGRLTLIQAVLSSLPTYYLSVFKAPSSIYKDIEKILWNFLWKGSD 60
            ++KKL++WK+A I KGGRLTLI++ LSSLP Y LSVF+APS   K+IEK+   FLWKG++
Sbjct: 1441 IQKKLNNWKYAQISKGGRLTLIKSTLSSLPIYQLSVFQAPSLTCKNIEKLWRKFLWKGNN 1500

Query: 61   NCSGSHLVRWDIVTLPKEHGGLGIDRIKISNEALLCKWIWRYIKEKDSLWRNLIDAKYSC 120
               GSHL+ W  V+  KE GGLGI R+ ++N+ALL KW+WRY+ E ++LWR LI  KY  
Sbjct: 1501 GSEGSHLINWTKVSKSKEEGGLGISRLNVTNKALLSKWLWRYLSEPNALWRRLIQCKYKG 1560

Query: 121  KHPENIPDMCKYSSSKALWFHI--------SKFENMLRNGNNTMCWLHPWNSDEKLYQVF 180
            K P +IP     S+SKA W  I        S     L NG+    W   W+ + +L   +
Sbjct: 1561 KFPGDIPSNISSSTSKAPWRSIIDSTDWFKSNQSWDLNNGDQISFWYSNWSQEGRLSTAY 1620

Query: 181  PRFFALAMDKLINVADVWKEDSREWILTFRRPLLNHAKDLWNQI 217
            PR FAL +DK I+V D W     +W + FRR L +  +  W +I
Sbjct: 1621 PRLFALTLDKEISVKDAWNTFDNQWNIIFRRELNDRERCNWEKI 1664

BLAST of Clc05G09140 vs. ExPASy Swiss-Prot
Match: P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 6.1e-19
Identity = 44/118 (37.29%), Postives = 67/118 (56.78%), Query Frame = 0

Query: 1   MEKKLDSWKFAYIFKGGRLTLIQAVLSSLPTYYLSVFKAPSSIYKDIEKILWNFLWKGSD 60
           +  ++  W+   +   GRLTL +AVLSS+P + +S    P SI   ++++   FLW  + 
Sbjct: 20  VSSRMSGWREKTLSFAGRLTLTKAVLSSMPVHSMSTILLPQSILNRLDQLSRTFLWGSTA 79

Query: 61  NCSGSHLVRWDIVTLPKEHGGLGIDRIKISNEALLCKWIWRYIKEKDSLWRNLIDAKY 119
                HLV+W  V  PK+ GGLG+   K  N AL+ K  WR ++EK+SLW  ++  KY
Sbjct: 80  EKKKQHLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWRLLQEKNSLWTLVLQKKY 137

BLAST of Clc05G09140 vs. ExPASy TrEMBL
Match: A0A5D3BL61 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G001020 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 1.3e-59
Identity = 114/227 (50.22%), Postives = 150/227 (66.08%), Query Frame = 0

Query: 1    MEKKLDSWKFAYIFKGGRLTLIQAVLSSLPTYYLSVFKAPSSIYKDIEKILWNFLWKGSD 60
            ++KKL +WK+A+I KGGRLTLI++ LSSLP Y LSVF+APSS YK+IEK+  NFLWKGS 
Sbjct: 1346 IQKKLSNWKYAHISKGGRLTLIKSTLSSLPIYKLSVFQAPSSTYKNIEKLWRNFLWKGSC 1405

Query: 61   NCSGSHLVRWDIVTLPKEHGGLGIDRIKISNEALLCKWIWRYIKEKDSLWRNLIDAKYSC 120
               GSHL+ W IVT PKE GGLGI R++++N+ALL KW+WRY  E +SLWR LI  KY  
Sbjct: 1406 GLKGSHLINWSIVTKPKEEGGLGISRLQVTNQALLSKWLWRYYSEPNSLWRRLIHIKYKG 1465

Query: 121  KHPENIPDMCKYSSSKALW----FHISKFENM----LRNGNNTMCWLHPWNSDEKLYQVF 180
            KHP ++P     SSSKA W     +I  F++     L NG+    W   W+ +  L   +
Sbjct: 1466 KHPGDLPSNISSSSSKAPWRSIINNIDWFKSNQGWDLNNGDQISFWYSNWSPEGCLSTAY 1525

Query: 181  PRFFALAMDKLINVADVWKEDSREWILTFRRPLLNHAKDLWNQISTN 220
            PR FAL+MDK  ++ DVW  ++ +W +TFRR L +     W +I  N
Sbjct: 1526 PRLFALSMDKESSIKDVWNSNNNQWEITFRRKLNDRELSTWQKILEN 1572

BLAST of Clc05G09140 vs. ExPASy TrEMBL
Match: A0A5D3C2W8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G001680 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 5.3e-58
Identity = 112/227 (49.34%), Postives = 148/227 (65.20%), Query Frame = 0

Query: 1    MEKKLDSWKFAYIFKGGRLTLIQAVLSSLPTYYLSVFKAPSSIYKDIEKILWNFLWKGSD 60
            ++KKL +WK+A+I KGGRLTLI++ LSSLP Y LSVF+A SS YK+IEK+  NFLWKGS 
Sbjct: 934  IQKKLSNWKYAHISKGGRLTLIKSTLSSLPIYQLSVFQASSSTYKNIEKLWRNFLWKGSC 993

Query: 61   NCSGSHLVRWDIVTLPKEHGGLGIDRIKISNEALLCKWIWRYIKEKDSLWRNLIDAKYSC 120
               GSHL+ W IVT PKE GGLGI R++I+N+ALL KW+WRY  E +SLWR LI  KY  
Sbjct: 994  GSKGSHLINWSIVTKPKEEGGLGISRLQITNQALLSKWLWRYYSEPNSLWRRLIHIKYQG 1053

Query: 121  KHPENIPDMCKYSSSKALW----FHISKFENM----LRNGNNTMCWLHPWNSDEKLYQVF 180
            KHP ++P     SSSKA W     +I  F+      L NG+    W   W+ +  L+  +
Sbjct: 1054 KHPGDLPSNISSSSSKAPWRSIINNIEWFKRNQGWDLNNGDQISFWFSNWSPEGCLFTAY 1113

Query: 181  PRFFALAMDKLINVADVWKEDSREWILTFRRPLLNHAKDLWNQISTN 220
             R FAL++DK  ++ DVW  ++ +W +TFRR L +     W +I  N
Sbjct: 1114 SRLFALSIDKESSIKDVWNSNNNQWEITFRRKLNDREISTWQRILEN 1160

BLAST of Clc05G09140 vs. ExPASy TrEMBL
Match: A0A5D3C3M3 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G003160 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 1.1e-55
Identity = 110/227 (48.46%), Postives = 145/227 (63.88%), Query Frame = 0

Query: 1    MEKKLDSWKFAYIFKGGRLTLIQAVLSSLPTYYLSVFKAPSSIYKDIEKILWNFLWKGSD 60
            ++KKL++WK+A+I KGGRLTLI++ LSSL  Y LSVF+AP S YK+IEK+  NFLWKGS 
Sbjct: 1180 IQKKLNNWKYAHISKGGRLTLIKSTLSSLSIYQLSVFQAPPSTYKNIEKLWRNFLWKGSF 1239

Query: 61   NCSGSHLVRWDIVTLPKEHGGLGIDRIKISNEALLCKWIWRYIKEKDSLWRNLIDAKYSC 120
               GSHL+ W IVT  KE GGLGI R+++ N+ALL KW+WRY  E +SLWR LI  KY  
Sbjct: 1240 GLKGSHLINWSIVTKLKEEGGLGISRLQVINQALLSKWLWRYYSEPNSLWRRLIHIKYKG 1299

Query: 121  KHPENIPDMCKYSSSKALW----FHISKFENM----LRNGNNTMCWLHPWNSDEKLYQVF 180
            KHP +IP     SSSKA W     +I  F++     L N +    W   W+ +  L   +
Sbjct: 1300 KHPGDIPSNISSSSSKAPWKSIINNIDWFKSNQGWDLNNEDQISFWYSNWSPEGCLSTAY 1359

Query: 181  PRFFALAMDKLINVADVWKEDSREWILTFRRPLLNHAKDLWNQISTN 220
            PR FAL++DK  ++ DVW  ++ +W +TFRR L +     W  I  N
Sbjct: 1360 PRLFALSIDKKSSIKDVWNSNNNQWEITFRRKLNDRELSTWQNILEN 1406

BLAST of Clc05G09140 vs. ExPASy TrEMBL
Match: A0A5A7UTS4 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3840G00080 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 4.2e-55
Identity = 109/224 (48.66%), Postives = 142/224 (63.39%), Query Frame = 0

Query: 4   KLDSWKFAYIFKGGRLTLIQAVLSSLPTYYLSVFKAPSSIYKDIEKILWNFLWKGSDNCS 63
           +L++WK+A+I KGGRLTLI++ LSSLP Y LSVF+APSS YK+I+K   NFLWKGS    
Sbjct: 576 ELNNWKYAHISKGGRLTLIKSTLSSLPIYQLSVFQAPSSTYKNIKKSWRNFLWKGSFGLK 635

Query: 64  GSHLVRWDIVTLPKEHGGLGIDRIKISNEALLCKWIWRYIKEKDSLWRNLIDAKYSCKHP 123
           GSHL+ W  VT PKE GGLGI R++++N+ALL K +WRY  E +SLWR LI  KY  KHP
Sbjct: 636 GSHLINWSKVTKPKEEGGLGISRLQVTNQALLSKSLWRYYSEPNSLWRRLIHIKYKGKHP 695

Query: 124 ENIPDMCKYSSSKALWFHI--------SKFENMLRNGNNTMCWLHPWNSDEKLYQVFPRF 183
            +IP     SSSKA W  I        S     L NG+    W   W+ +  L   +PR 
Sbjct: 696 GDIPSNISSSSSKAPWRSIINNIDWFKSNHGWDLNNGDQISFWYSNWSQEGCLSTAYPRL 755

Query: 184 FALAMDKLINVADVWKEDSREWILTFRRPLLNHAKDLWNQISTN 220
           FAL++DK  ++ DVW  ++ +W +TFRR L +     W +I  N
Sbjct: 756 FALSLDKESSIKDVWNSNNNQWEITFRRKLNDRELSTWEKILEN 799

BLAST of Clc05G09140 vs. ExPASy TrEMBL
Match: A0A5D3BLV7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005290 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 1.9e-52
Identity = 103/224 (45.98%), Postives = 139/224 (62.05%), Query Frame = 0

Query: 1    MEKKLDSWKFAYIFKGGRLTLIQAVLSSLPTYYLSVFKAPSSIYKDIEKILWNFLWKGSD 60
            ++KKL++WK+A I KGGRLTLI++ LSSLP Y LSVF+APS   K+IEK+   FLWKG++
Sbjct: 1441 IQKKLNNWKYAQISKGGRLTLIKSTLSSLPIYQLSVFQAPSLTCKNIEKLWRKFLWKGNN 1500

Query: 61   NCSGSHLVRWDIVTLPKEHGGLGIDRIKISNEALLCKWIWRYIKEKDSLWRNLIDAKYSC 120
               GSHL+ W  V+  KE GGLGI R+ ++N+ALL KW+WRY+ E ++LWR LI  KY  
Sbjct: 1501 GSEGSHLINWTKVSKSKEEGGLGISRLNVTNKALLSKWLWRYLSEPNALWRRLIQCKYKG 1560

Query: 121  KHPENIPDMCKYSSSKALWFHI--------SKFENMLRNGNNTMCWLHPWNSDEKLYQVF 180
            K P +IP     S+SKA W  I        S     L NG+    W   W+ + +L   +
Sbjct: 1561 KFPGDIPSNISSSTSKAPWRSIIDSTDWFKSNQSWDLNNGDQISFWYSNWSQEGRLSTAY 1620

Query: 181  PRFFALAMDKLINVADVWKEDSREWILTFRRPLLNHAKDLWNQI 217
            PR FAL +DK I+V D W     +W + FRR L +  +  W +I
Sbjct: 1621 PRLFALTLDKEISVKDAWNTFDNQWNIIFRRELNDRERCNWEKI 1664

BLAST of Clc05G09140 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 90.1 bits (222), Expect = 2.4e-18
Identity = 53/185 (28.65%), Postives = 88/185 (47.57%), Query Frame = 0

Query: 28  SLPTYYLSVFKAPSSIYKDIEKILWNFLWKGSDNCSGSHLVRWDIVTLPKEHGGLGIDRI 87
           +LPTY ++ F  P ++ K I  +L +F W+      G H   WD ++  K  GG+G   I
Sbjct: 2   ALPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDI 61

Query: 88  KISNEALLCKWIWRYIKEKDSLWRNLIDAKYSCK-HPENIPDMCKYSSSKALWFHISKFE 147
           +  N ALL K +WR +   +SL   +  ++Y  K  P N P     S    +W  I   +
Sbjct: 62  EAFNLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAP---LGSRPSFVWKSIHASQ 121

Query: 148 NMLR--------NGNNTMCWLHPWNSDE------KLYQVFPRFFALAMDKLINVADVWKE 198
            +LR        NG + + W H W   +      ++ +V P+ +A ++  ++ V+D+  E
Sbjct: 122 EILRQGARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYA-SVSSILKVSDLIDE 181

BLAST of Clc05G09140 vs. TAIR 10
Match: AT3G24255.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 79.0 bits (193), Expect = 5.5e-15
Identity = 48/177 (27.12%), Postives = 75/177 (42.37%), Query Frame = 0

Query: 4   KLDSWKFAYIFKGGRLTLIQAVLSSLPTYYLSVFKAPSSIYKDIEKILWNFLWKGSDNCS 63
           ++  W   ++   GRL LI +V+ SL  +++S F+ PS+  K+I+ I  +FLW G +  +
Sbjct: 52  RIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNT 111

Query: 64  GSHLVRWDIVTLPKEHGGLGIDRIK---------ISNEALLCKWIWRYIKEKDSLWRNLI 123
               V W  V  PK+ GGLGI  +K         IS    L  W+W+ I +  +L    +
Sbjct: 112 KKAKVAWSDVCTPKDEGGLGIRSLKEANKGSFWSISGNTTLGSWMWKKILKHRALASGFV 171

Query: 124 DAKYSCKHPENIPDMCKYSSSKALWFHISKFENMLRNGNNTMCWLHPWNSDEKLYQV 172
                 KH                          + NG+NT  W   W+   +L  V
Sbjct: 172 ------KHD-------------------------IHNGSNTSFWFDNWSKIGRLIDV 197

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK00493.12.6e-5950.22LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
TYK05690.11.1e-5749.34LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
TYK05808.12.3e-5548.46LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
KAA0058554.18.7e-5548.66LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK016... [more]
TYJ99315.14.0e-5245.98LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
P0C2F66.1e-1937.29Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1... [more]
Match NameE-valueIdentityDescription
A0A5D3BL611.3e-5950.22LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5D3C2W85.3e-5849.34LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5D3C3M31.1e-5548.46LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7UTS44.2e-5548.66LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5D3BLV71.9e-5245.98LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
Match NameE-valueIdentityDescription
AT4G29090.12.4e-1828.65Ribonuclease H-like superfamily protein [more]
AT3G24255.15.5e-1527.12RNA-directed DNA polymerase (reverse transcriptase)-related family protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33116:SF33OS01G0885550 PROTEINcoord: 2..196
NoneNo IPR availablePANTHERPTHR33116REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATEDcoord: 2..196

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc05G09140.1Clc05G09140.1mRNA