Clc05G08080 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc05G08080
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Unknown protein
Location	ClcChr05: 6111662 .. 6112356 (-)
RNA-Seq Expression	Clc05G08080
Synteny	Clc05G08080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTAGAAGTTTAAGGACTAATTTTAATCATGAAAATTAAATTTGAGAATGTGATTATAACTGCCACCCATAACAAAATACTAAGCTCTTAATACTCACTCCGGCGGCCCTATGCAGCCACGCGCTTCTCCGACGAATAGACCCACCAGCAGCGACAACTCGACCGAACCCAACATCGGGAACTTCCCGAGAACCTCCATCCACCGACGGGAATCCGGCAACCCACACGAAGTTTCGGATCCAGGGAATAGCTTCAGATCCGGCGAGGCAGAGCGGACCGTGGATGAAGCCCCACGAAGAGTACACGCGCGCACTTCCGATCGACGGCCACCCACGACCGCAGTAGACTCCGGTGCTTCACGGCGATGGCCGATTTTCCTGCACCGAAACAGTGGCCTTCAAGGTAAAGAGGGCTGCTTCATCGAAGAAGATGAAGAGAAGATTGGAGGGAGAAGTCGAAGTCGAAGAAGAAGTGGAGAAAAGAAATTCGGAAAAGTGATGGGCCCATTCATTATTATTATTATTATTTTATTTTCTCTGTTTAATATTTATCCTAAAAAGTTCTATTAAGAAAAAGAATTTTTTTTTTTTATCAGGCGCTCGCAATATGATAGTCCGAAGGAAACGGCCAGAAATGGAAGAATCTGATCGATCGCAGCCGTCCGATGTGTTCTCTCTCTACAGTTCCCGGTGA

mRNA sequence

ATGCTAGAACCACGCGCTTCTCCGACGAATAGACCCACCAGCAGCGACAACTCGACCGAACCCAACATCGGGAACTTCCCGAGAACCTCCATCCACCGACGGGAATCCGGCAACCCACACGAAGTTTCGGATCCAGGGAATAGCTTCAGATCCGGCGAGGCAGAGCGGACCGTGGATGAAGCCCCACGAAGAGTACACGCGCGCACTTCCGATCGACGGCCACCCACGACCGCAGTAGACTCCGGTGCTTCACGGCGATGGCCGATTTTCCTGCACCGAAACAGTGGCCTTCAAGGTAAAGAGGGCTGCTTCATCGAAGAAGATGAAGAGAAGATTGGAGGGAGAAGTCGAAGTCGAAGAAGAAGCGCTCGCAATATGATAGTCCGAAGGAAACGGCCAGAAATGGAAGAATCTGATCGATCGCAGCCGTCCGATGTGTTCTCTCTCTACAGTTCCCGGTGA

Coding sequence (CDS)

ATGCTAGAACCACGCGCTTCTCCGACGAATAGACCCACCAGCAGCGACAACTCGACCGAACCCAACATCGGGAACTTCCCGAGAACCTCCATCCACCGACGGGAATCCGGCAACCCACACGAAGTTTCGGATCCAGGGAATAGCTTCAGATCCGGCGAGGCAGAGCGGACCGTGGATGAAGCCCCACGAAGAGTACACGCGCGCACTTCCGATCGACGGCCACCCACGACCGCAGTAGACTCCGGTGCTTCACGGCGATGGCCGATTTTCCTGCACCGAAACAGTGGCCTTCAAGGTAAAGAGGGCTGCTTCATCGAAGAAGATGAAGAGAAGATTGGAGGGAGAAGTCGAAGTCGAAGAAGAAGCGCTCGCAATATGATAGTCCGAAGGAAACGGCCAGAAATGGAAGAATCTGATCGATCGCAGCCGTCCGATGTGTTCTCTCTCTACAGTTCCCGGTGA

Protein sequence

MLEPRASPTNRPTSSDNSTEPNIGNFPRTSIHRRESGNPHEVSDPGNSFRSGEAERTVDEAPRRVHARTSDRRPPTTAVDSGASRRWPIFLHRNSGLQGKEGCFIEEDEEKIGGRSRSRRRSARNMIVRRKRPEMEESDRSQPSDVFSLYSSR

Homology

The following BLAST results are available for this feature:

BLAST of Clc05G08080 vs.


Match Name	E-value	Identity	Description

BLAST of Clc05G08080 vs.


Match Name	E-value	Identity	Description

BLAST of Clc05G08080 vs.


Match Name	E-value	Identity	Description

BLAST of Clc05G08080 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 7..32
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 110..153
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc05G08080.2	Clc05G08080.2	mRNA