Clc05G08040 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TGGCTATCCCAATGTATAGAGAAATGGTGAAATAGCTAGAAGCAATATAATCAAGTGGGAGAGGGAAAAGAGGGTTCAACAATTAGCCAAACCCTATAAACTTAGGGAGAACCTCCGATCCCCAAATGCAATGCCACTTCTTTTTCTTTCTCTACAATTATTGCTATCTTAGTTAGCCAAAGAGTTTTTATATTATACTGTCATTGCCATTTTCTTGCTTTTGATCTTTCTTTTTTGTTGAGATAAGCTATGGTGAGAGCTCCTTGTTGTCAAAAAGTGGGGCTGAAAAGGGGAAGGTGGACAGCTGAAGAAGATGAAATCTTAATCAATTATATTCAAGCCAATGGTGAAGGCTCATGGAGATCCTTACCCAAAAATGCAGGTTCAATTCAATTCATTTCTTCTCTTCTTTTCTTATACATTTATTACAATCACCAATATTTTGAGTTTTGTAGAATCAAACAAACCATTGTTTTGATTTGGATTCTCTTGAGTGTGTTTTCTGTTGAACTTTTGTGCTTGAAATGAAATAATTCTAGTGATTTTTTTTTCTTGTTTTTGGTGTTAAAAAGATCAGTTTTACAGAGAAAAAGAAAAAGACATTGTTTGATGGTCTTTTTATTATTATTATTTTGAAAACAAATTAAATAATGTTGTTATCAAACTTATAATTAATTGTATCCAAAAATGAGAAAGAAAAAGTTGGGGAAAAGCAATTTTAAAATTAATATTACCCTCCATAAAATAATAAGTTTATAAAACTTTACTTTTACCTCTCTATATTTCTATAGGTTGCCCATTTCCTACCAATGCTTTCAAGAACCAAGCAAGTTTTGATGGTTTGAAACTAAAAAAAGAAATCATTTTTAAAAATTTGTTTTTGTTTTTAGATTTAGACTAAGAATTCAAATGTTTCTCTTTAATAAAAATATTGAAAATTATGGTAAAAAAATTGAGACATTTATTGTTTTGTAATAAAGGATTGTTGAGGTGTGGGAAGAGTTGTAGATTGAGATGGATTAACTATCTAAGGGCAGACTTGAAGAGAGGGAACATCACAGCTGAGGAAGAACAAATGATTGCAAAGCTACATAATCTTTTTGGCAACAGGTACTTATTTTCAATTCAACTATTTTCATGTTATTTGCAACAAAGAAAATGCCCAAAAAAAAAAAAAATCCTCACATTAGTTTCTCATATCATATAATTGCTTATTTTTTATGAGAAATAATTAACAAAATGTATTTTTTTTTTTTTATATAAACCTAGTTCTAAAATGATTTATACTATTGACTTTAAAGTCAGAGATTTAATTTTTCCACACATATTGTAAAAAAAAAAAAATGTTTTTTCAATCTTGCTTTACTATTTAAAAAGTTTTTTCAATTTTTCCACACACATATATATATATATATATTTTTCTATTTTGATCTTTGAAACTTTTAATTACTATTTTAGCCTCGTAAGATTTTTAACAATTATATTCTTTAATAAGAGCATGATGTAACATTCATTTTGTCTCTTTATACCTTGTGTAAACTAAACACATGTTTTATGTCGACATGTAGCGAGTCCTATCTCCTACGTCAAAGTTTGAAAAAGTTAAAACTTATGTTGTTAATAAAAAATCAATAACGATAGCAACAAAAAAGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATTTTAAATTTTGAATTAAGTTGTACATATACCTAAAAAAAAATAGTAATATTATTTTAATTAAAAAAAAGTCCTTTCTAACTTCATTTCTAAATTAAAGTAGTTCACATCAAAACCAATGGAAAGCAATACTTTTTGCAACTACTTTCTACTTTGAAGTTCACATTAAACCCTTGTGAAAGTGTTTATATTCAAAATACTTTTTTTAAAAGCACTTTATAAAGCCTAAAATCATATGAGGCAAATTTGAAAAACATTTTAAATTTGAGATTGTTATTTATTTTTTTTAGTTATTAGGGACTAGAGCCCCTCCTAACTTTGTTTTCAATTTCACTTAAAAGGTATGATATATTATCATTCACTTATAATCTCACGATATCATTCAAGAGAATTATGTTTATGTAATTAAACATATTTTGATCAAACTAATTGCCAATCTGAACATAGTTTAACTAACATAAGCTTATACTATTGACTTCGAGCTTTGATGTTCAATTCCTCCATCACACATATTGTAAAAGAAAAAACATATTTTGATCTAACTTTTGTTCTAAAAAGAAACTATTTGATCCAAACAATTTAATCCATGTCCTAATTTTCCTTATTGCTTTCCATTAAAGTATTGTGTAGAAGGATGCAGTCCCCATCCCTCTTTAAAGCTAATTAACATTCAGACTGTAGCATTTGTTCTTCTTGGACCACATTGACAAACAATATTTAAAACCCTAAAGACAAAGTGCAAACGACAAACCCCATTGGCCATTACACTCACAAAGAGTTTCTTCTTTTTCCCCATTTTCACTCAATCTTGTCTCCCAATACAAATAATTAAATAAATAAGCCCAAAATTTGGCGGATCATGTCCAATCACTTCCATTCTCTTGTATTTTGTTTGATTTCTCTCCCTATATAATATTAAAGACCATTATTTACGAACAAGGTAATGATATGTTTGGTTCATGAGGTTAATGAGGGTTCTAAATGATGTTTGACAACTGTTTTGGATTTGATTGCTTTTTAGGTGGTCTTTAATAGCGGGACATTTGCCTGGCCGAACAGACAACGAAATAAAAAACTATTGGAACTCTCATCTAAGTCGAAGAATCTACACCATGACACGGCCTTCTATGAAATCTTCTTTACCCATCACCGGCATCCTCGACATTACTCCTGGTTCAAAGCAAAAGCGAAACTTTAGAAAAAACCAACAACTACAAGCTGCTATAGTTGTTAAAGAGAAAACAATGGAGAAAGAGAAAATAGAAGAAGGGTTGAGTTCAAAAGACCATGGTAGAGAAGATAAAAATAGATTGGGAAATGATGAATTGGTATTGAGCCCCATAAGGGATGATGGAGGTGGAGAGGAGGATTTGGGACCATATGATTGGCTAGATGGTGAAATAATGAGACTGAATAATGAAATTAATGAATGGGGAATGGTGGAATCAAGTGGAAATAATGGATGCAATGAGAAAGTGACATGTAGTACTAAAGATCATCAGAATGGGTCTTGTTCTTCTTCAGTGAATTCAGCTTTGGAAAAGGATCAATGGCTGAATTGGGATTGGGAAGATAATAATGGATCAGTTGAAGGATGTAATTTGGACCAATGGGAGCTTGAGGAAATTTCATCTTGGTTATGGGAAACTGAAATTGATCAATGTATTAAGAGTTAGGCTTGCAAAGAAATAGATAGGCAAAGCCTTTTGTTTGATTATATATATTTAATTTATAAAATCATACTTGTTGATTGGTAACCTTTTTCTTTCTTTGTTTTTATATGTCTCTACTTTCAAACTTTGTTTTTGAAAACTCAAAA TGGCTATCCCAATGTATAGAGAAATGGTGAAATAGCTAGAAGCAATATAATCAAGTGGGAGAGGGAAAAGAGGGTTCAACAATTAGCCAAACCCTATAAACTTAGGGAGAACCTCCGATCCCCAAATGCAATGCCACTTCTTTTTCTTTCTCTACAATTATTGCTATCTTAGTTAGCCAAAGAGTTTTTATATTATACTGTCATTGCCATTTTCTTGCTTTTGATCTTTCTTTTTTGTTGAGATAAGCTATGGTGAGAGCTCCTTGTTGTCAAAAAGTGGGGCTGAAAAGGGGAAGGTGGACAGCTGAAGAAGATGAAATCTTAATCAATTATATTCAAGCCAATGGTGAAGGCTCATGGAGATCCTTACCCAAAAATGCAGGATTGTTGAGGTGTGGGAAGAGTTGTAGATTGAGATGGATTAACTATCTAAGGGCAGACTTGAAGAGAGGGAACATCACAGCTGAGGAAGAACAAATGATTGCAAAGCTACATAATCTTTTTGGCAACAGGTGGTCTTTAATAGCGGGACATTTGCCTGGCCGAACAGACAACGAAATAAAAAACTATTGGAACTCTCATCTAAGTCGAAGAATCTACACCATGACACGGCCTTCTATGAAATCTTCTTTACCCATCACCGGCATCCTCGACATTACTCCTGGTTCAAAGCAAAAGCGAAACTTTAGAAAAAACCAACAACTACAAGCTGCTATAGTTGTTAAAGAGAAAACAATGGAGAAAGAGAAAATAGAAGAAGGGTTGAGTTCAAAAGACCATGGTAGAGAAGATAAAAATAGATTGGGAAATGATGAATTGGTATTGAGCCCCATAAGGGATGATGGAGGTGGAGAGGAGGATTTGGGACCATATGATTGGCTAGATGGTGAAATAATGAGACTGAATAATGAAATTAATGAATGGGGAATGGTGGAATCAAGTGGAAATAATGGATGCAATGAGAAAGTGACATGTAGTACTAAAGATCATCAGAATGGGTCTTGTTCTTCTTCAGTGAATTCAGCTTTGGAAAAGGATCAATGGCTGAATTGGGATTGGGAAGATAATAATGGATCAGTTGAAGGATGTAATTTGGACCAATGGGAGCTTGAGGAAATTTCATCTTGGTTATGGGAAACTGAAATTGATCAATGTATTAAGAGTTAGGCTTGCAAAGAAATAGATAGGCAAAGCCTTTTGTTTGATTATATATATTTAATTTATAAAATCATACTTGTTGATTGGTAACCTTTTTCTTTCTTTGTTTTTATATGTCTCTACTTTCAAACTTTGTTTTTGAAAACTCAAAA ATGGTGAGAGCTCCTTGTTGTCAAAAAGTGGGGCTGAAAAGGGGAAGGTGGACAGCTGAAGAAGATGAAATCTTAATCAATTATATTCAAGCCAATGGTGAAGGCTCATGGAGATCCTTACCCAAAAATGCAGGATTGTTGAGGTGTGGGAAGAGTTGTAGATTGAGATGGATTAACTATCTAAGGGCAGACTTGAAGAGAGGGAACATCACAGCTGAGGAAGAACAAATGATTGCAAAGCTACATAATCTTTTTGGCAACAGGTGGTCTTTAATAGCGGGACATTTGCCTGGCCGAACAGACAACGAAATAAAAAACTATTGGAACTCTCATCTAAGTCGAAGAATCTACACCATGACACGGCCTTCTATGAAATCTTCTTTACCCATCACCGGCATCCTCGACATTACTCCTGGTTCAAAGCAAAAGCGAAACTTTAGAAAAAACCAACAACTACAAGCTGCTATAGTTGTTAAAGAGAAAACAATGGAGAAAGAGAAAATAGAAGAAGGGTTGAGTTCAAAAGACCATGGTAGAGAAGATAAAAATAGATTGGGAAATGATGAATTGGTATTGAGCCCCATAAGGGATGATGGAGGTGGAGAGGAGGATTTGGGACCATATGATTGGCTAGATGGTGAAATAATGAGACTGAATAATGAAATTAATGAATGGGGAATGGTGGAATCAAGTGGAAATAATGGATGCAATGAGAAAGTGACATGTAGTACTAAAGATCATCAGAATGGGTCTTGTTCTTCTTCAGTGAATTCAGCTTTGGAAAAGGATCAATGGCTGAATTGGGATTGGGAAGATAATAATGGATCAGTTGAAGGATGTAATTTGGACCAATGGGAGCTTGAGGAAATTTCATCTTGGTTATGGGAAACTGAAATTGATCAATGTATTAAGAGTTAG MVRAPCCQKVGLKRGRWTAEEDEILINYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEQMIAKLHNLFGNRWSLIAGHLPGRTDNEIKNYWNSHLSRRIYTMTRPSMKSSLPITGILDITPGSKQKRNFRKNQQLQAAIVVKEKTMEKEKIEEGLSSKDHGREDKNRLGNDELVLSPIRDDGGGEEDLGPYDWLDGEIMRLNNEINEWGMVESSGNNGCNEKVTCSTKDHQNGSCSSSVNSALEKDQWLNWDWEDNNGSVEGCNLDQWELEEISSWLWETEIDQCIKS Homology
BLAST of Clc05G08040 vs. NCBI nr
Match: XP_038880174.1 (transcription factor MYB111 [Benincasa hispida]) HSP 1 Score: 512.3 bits (1318), Expect = 2.9e-141 Identity = 252/304 (82.89%), Postives = 273/304 (89.80%), Query Frame = 0
BLAST of Clc05G08040 vs. NCBI nr
Match: XP_008438925.1 (PREDICTED: LOW QUALITY PROTEIN: transcription factor MYB12 [Cucumis melo]) HSP 1 Score: 497.3 bits (1279), Expect = 9.6e-137 Identity = 247/309 (79.94%), Postives = 270/309 (87.38%), Query Frame = 0
BLAST of Clc05G08040 vs. NCBI nr
Match: XP_004134499.1 (transcription factor MYB8 [Cucumis sativus] >KAE8650401.1 hypothetical protein Csa_009935 [Cucumis sativus]) HSP 1 Score: 469.9 bits (1208), Expect = 1.6e-128 Identity = 237/300 (79.00%), Postives = 258/300 (86.00%), Query Frame = 0
BLAST of Clc05G08040 vs. NCBI nr
Match: XP_022138182.1 (transcription factor MYB111-like [Momordica charantia]) HSP 1 Score: 387.9 bits (995), Expect = 8.2e-104 Identity = 213/320 (66.56%), Postives = 244/320 (76.25%), Query Frame = 0
BLAST of Clc05G08040 vs. NCBI nr
Match: XP_022934658.1 (transcription factor MYB111-like [Cucurbita moschata] >KAG6597563.1 Transcription factor MYB111, partial [Cucurbita argyrosperma subsp. sororia] >KAG7029007.1 Transcription factor MYB-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 364.4 bits (934), Expect = 9.7e-97 Identity = 196/311 (63.02%), Postives = 221/311 (71.06%), Query Frame = 0
BLAST of Clc05G08040 vs. ExPASy Swiss-Prot
Match: Q9FJ07 (Transcription factor MYB111 OS=Arabidopsis thaliana OX=3702 GN=MYB111 PE=1 SV=1) HSP 1 Score: 242.7 bits (618), Expect = 5.6e-63 Identity = 133/262 (50.76%), Postives = 160/262 (61.07%), Query Frame = 0
BLAST of Clc05G08040 vs. ExPASy Swiss-Prot
Match: O22264 (Transcription factor MYB12 OS=Arabidopsis thaliana OX=3702 GN=MYB12 PE=1 SV=1) HSP 1 Score: 227.6 bits (579), Expect = 1.9e-58 Identity = 110/172 (63.95%), Postives = 133/172 (77.33%), Query Frame = 0
BLAST of Clc05G08040 vs. ExPASy Swiss-Prot
Match: P27898 (Myb-related protein P OS=Zea mays OX=4577 GN=P PE=2 SV=1) HSP 1 Score: 219.5 bits (558), Expect = 5.0e-56 Identity = 98/121 (80.99%), Postives = 107/121 (88.43%), Query Frame = 0
BLAST of Clc05G08040 vs. ExPASy Swiss-Prot
Match: Q9LZK4 (Transcription factor MYB11 OS=Arabidopsis thaliana OX=3702 GN=MYB11 PE=1 SV=1) HSP 1 Score: 205.7 bits (522), Expect = 7.5e-52 Identity = 110/221 (49.77%), Postives = 142/221 (64.25%), Query Frame = 0
BLAST of Clc05G08040 vs. ExPASy Swiss-Prot
Match: Q9SDS8 (Transcription factor MYB8 OS=Arabidopsis thaliana OX=3702 GN=MYB8 PE=2 SV=1) HSP 1 Score: 196.1 bits (497), Expect = 6.0e-49 Identity = 84/116 (72.41%), Postives = 100/116 (86.21%), Query Frame = 0
BLAST of Clc05G08040 vs. ExPASy TrEMBL
Match: A0A1S3AX58 (LOW QUALITY PROTEIN: transcription factor MYB12 OS=Cucumis melo OX=3656 GN=LOC103483880 PE=4 SV=1) HSP 1 Score: 497.3 bits (1279), Expect = 4.6e-137 Identity = 247/309 (79.94%), Postives = 270/309 (87.38%), Query Frame = 0
BLAST of Clc05G08040 vs. ExPASy TrEMBL
Match: A0A6J1CAD0 (transcription factor MYB111-like OS=Momordica charantia OX=3673 GN=LOC111009416 PE=4 SV=1) HSP 1 Score: 387.9 bits (995), Expect = 4.0e-104 Identity = 213/320 (66.56%), Postives = 244/320 (76.25%), Query Frame = 0
BLAST of Clc05G08040 vs. ExPASy TrEMBL
Match: A0A6J1F899 (transcription factor MYB111-like OS=Cucurbita moschata OX=3662 GN=LOC111441783 PE=4 SV=1) HSP 1 Score: 364.4 bits (934), Expect = 4.7e-97 Identity = 196/311 (63.02%), Postives = 221/311 (71.06%), Query Frame = 0
BLAST of Clc05G08040 vs. ExPASy TrEMBL
Match: A0A6J1I444 (transcription factor MYB111-like OS=Cucurbita maxima OX=3661 GN=LOC111470793 PE=4 SV=1) HSP 1 Score: 360.1 bits (923), Expect = 8.8e-96 Identity = 194/309 (62.78%), Postives = 219/309 (70.87%), Query Frame = 0
BLAST of Clc05G08040 vs. ExPASy TrEMBL
Match: A0A6J1GVH5 (transcription factor MYB111-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111457857 PE=4 SV=1) HSP 1 Score: 350.9 bits (899), Expect = 5.4e-93 Identity = 184/299 (61.54%), Postives = 213/299 (71.24%), Query Frame = 0
BLAST of Clc05G08040 vs. TAIR 10
Match: AT5G49330.1 (myb domain protein 111 ) HSP 1 Score: 242.7 bits (618), Expect = 4.0e-64 Identity = 133/262 (50.76%), Postives = 160/262 (61.07%), Query Frame = 0
BLAST of Clc05G08040 vs. TAIR 10
Match: AT2G47460.1 (myb domain protein 12 ) HSP 1 Score: 227.6 bits (579), Expect = 1.3e-59 Identity = 110/172 (63.95%), Postives = 133/172 (77.33%), Query Frame = 0
BLAST of Clc05G08040 vs. TAIR 10
Match: AT3G62610.1 (myb domain protein 11 ) HSP 1 Score: 205.7 bits (522), Expect = 5.4e-53 Identity = 110/221 (49.77%), Postives = 142/221 (64.25%), Query Frame = 0
BLAST of Clc05G08040 vs. TAIR 10
Match: AT1G35515.1 (high response to osmotic stress 10 ) HSP 1 Score: 196.1 bits (497), Expect = 4.2e-50 Identity = 84/116 (72.41%), Postives = 100/116 (86.21%), Query Frame = 0
BLAST of Clc05G08040 vs. TAIR 10
Match: AT4G38620.1 (myb domain protein 4 ) HSP 1 Score: 194.5 bits (493), Expect = 1.2e-49 Identity = 88/133 (66.17%), Postives = 104/133 (78.20%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
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