Clc05G07740 (gene) Watermelon (cordophanus) v2

Overview
NameClc05G07740
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Descriptiontranslationally-controlled tumor protein homolog
LocationClcChr05: 5823167 .. 5825203 (-)
RNA-Seq ExpressionClc05G07740
SyntenyClc05G07740
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTTAAAGGAATAGAGTTATATTCCTTGAATTATACCAAGTTCTTAACCAAAACCCTGGCCTATAAATTGCCTGGCCTCGCCCATCTCAAACCCTCTCACGCTCCTGGTTGCCGTACTCTTCCTCTCCCCCAGATATCTTCTTTGCAGGAGCGATCCGGGAGTCAATTTTGCTATCATGTTGGTTTACACCGACCTTCTCTCTGGTAATTCTTCTACTATTTCCAATGAATCTAATGTTTTGGTTCTAGGGCTTCCATCTTCCTCTGTTAGGGTTTTCTTTTGTCTTTTTGGATCTGTGATTTTCTATGGATTCGTTTGTTGCCGTTTGGATCTGGAACATATTTTAGGCCAATCAATTTTTCTTTTACGGATTCACGTTGATAGAATAGAAATTTCATTGATTATTTAAAAACGAGGTTTATTATTAGCCGGGCTGTCGAGTTGTTTTGTAGTTCGGCCTTATTGTTAAAAGGCATCTGTCTCTTAGGGTTGGAGAATCTAATCCTTGATAGCTGCCTTTTATGAAAATATTGTGTTTTTTGATTCATGAATATGAATAGTAGAGATTAGGAGATTTTTTTCTATTGGTTTCTTTCCTATGTCTTGAAGTATTGTGATTGGTTATTTTCTTGATGATATTGTAGTAATATTTCTTAGATTTGATTTACACTGTGGACTTCTTTCTCTTCATTGGTCTCGAAGTAATACATGGATTTATTCAAATTTGTATATCAGGTGATGAGCTTCTCTCGGATTCGTTTCCATACAAGGAAATCGAGAATGGAATGATTTGGGAAGTCGATGGAAAGGTTTGTTATTTTTGTTTACTGTATCTCTTTTAATTAATGAACAAAGTGTGTTAATTAAATTGGATGGATATTGAGCACAATGCCTTACTCCTTTCTTAAAATGTTTTACTGCAGTGGGTCGTTCAAGGAGCGATTGATGTGGATATTGGTGCTAATCCTTCTGCTGAAGGTGCCGGTGAGGACGAAGGTGTTGATGATCAGGCTGTGAAGGTGGTCGACATTGTTGACACTTTCCGGCTTCAGGTAGGCATGCTCCTGATTAAGGTTCAGTGATTATTGCAAGCATTTAAGCATGGTTTATTTCAATTCTGGGTTTATAGGAGCAACCTCCTTTGGACAAGAAGTTGTTCATTGCATACATTAAGAAGTATATCAAATTACTGACACCTAAGCTGGAAGGGGAGAAACAAGAGGCATTTAAGAAGAACATTGAGGGAGCAACTAAGTATCTGCTTGCAAAGCTCAAGGACTTGCAATTGTAAGTACTTCTATAGTTGTCTATTTCTCTGTTTCTGTCGAACAGAAGATTTTTCCCGTTAAAGCTACTAAGTGATTCTCTCCTAACAGCACCAACAACTAAGTGATTTTTAGTGTTTTTAGAATTCAACTGTCTAAAAGCGGTTCTAAACTGACTTTTATCTATGAAACACCAACACTAACAGAGCATTGTTAATTAAAACAAGTCACATGGATGTTAATTCTTAATTTGTTTGGTAAAAATTTCTGAACCCTTTTTGGTTGGACTATCGTTTTGGTTCAGGTTTTTGTATCATTAGAACGATTCCTTAGGTACTCTTACGCTCTTTTGCAGCTTCGTTGGGGAGAGTATGGCTGACGATTGCTCTATCGTATTTGCATACTACAAGGAAGGAGCTACTGAACCAACATTTTTATACCTTGCCCCAGGTTTGAAGGAAGTCAAGTGCTGAAAGAACAAAACTTTGAAGCAGAATGCTTCATGTAGCATTATTAGTTTCTACTATATTTGCCTTTTTCTCATGACATTTGAATTTGGATGGTTTGGGCTGTTTTTGTTTTGGTTTATTTTGGGTTTCCTTGTTTTGACCTTGTTTACTGGGAGATGTTCTGGTGAGTGCAAAAGTTTACTCTATTTTTATGCCTAATGAATCTCTATTTTTATCATGTTAACTGCTGTTAGTTATCTTCATTCAAATTGGTAATGGAAATTTTAGAAAAAAAAGTGGTTTTTAAAAACTTGTTTTGTTT

mRNA sequence

CCTTAAAGGAATAGAGTTATATTCCTTGAATTATACCAAGTTCTTAACCAAAACCCTGGCCTATAAATTGCCTGGCCTCGCCCATCTCAAACCCTCTCACGCTCCTGGTTGCCGTACTCTTCCTCTCCCCCAGATATCTTCTTTGCAGGAGCGATCCGGGAGTCAATTTTGCTATCATGTTGGTTTACACCGACCTTCTCTCTGGTGATGAGCTTCTCTCGGATTCGTTTCCATACAAGGAAATCGAGAATGGAATGATTTGGGAAGTCGATGGAAAGTGGGTCGTTCAAGGAGCGATTGATGTGGATATTGGTGCTAATCCTTCTGCTGAAGGTGCCGGTGAGGACGAAGGTGTTGATGATCAGGCTGTGAAGGTGGTCGACATTGTTGACACTTTCCGGCTTCAGGAGCAACCTCCTTTGGACAAGAAGTTGTTCATTGCATACATTAAGAAGTATATCAAATTACTGACACCTAAGCTGGAAGGGGAGAAACAAGAGGCATTTAAGAAGAACATTGAGGGAGCAACTAAGTATCTGCTTGCAAAGCTCAAGGACTTGCAATTCTTCGTTGGGGAGAGTATGGCTGACGATTGCTCTATCGTATTTGCATACTACAAGGAAGGAGCTACTGAACCAACATTTTTATACCTTGCCCCAGGTTTGAAGGAAGTCAAGTGCTGAAAGAACAAAACTTTGAAGCAGAATGCTTCATGTAGCATTATTAGTTTCTACTATATTTGCCTTTTTCTCATGACATTTGAATTTGGATGGTTTGGGCTGTTTTTGTTTTGGTTTATTTTGGGTTTCCTTGTTTTGACCTTGTTTACTGGGAGATGTTCTGGTGAGTGCAAAAGTTTACTCTATTTTTATGCCTAATGAATCTCTATTTTTATCATGTTAACTGCTGTTAGTTATCTTCATTCAAATTGGTAATGGAAATTTTAGAAAAAAAAGTGGTTTTTAAAAACTTGTTTTGTTT

Coding sequence (CDS)

ATGTTGGTTTACACCGACCTTCTCTCTGGTGATGAGCTTCTCTCGGATTCGTTTCCATACAAGGAAATCGAGAATGGAATGATTTGGGAAGTCGATGGAAAGTGGGTCGTTCAAGGAGCGATTGATGTGGATATTGGTGCTAATCCTTCTGCTGAAGGTGCCGGTGAGGACGAAGGTGTTGATGATCAGGCTGTGAAGGTGGTCGACATTGTTGACACTTTCCGGCTTCAGGAGCAACCTCCTTTGGACAAGAAGTTGTTCATTGCATACATTAAGAAGTATATCAAATTACTGACACCTAAGCTGGAAGGGGAGAAACAAGAGGCATTTAAGAAGAACATTGAGGGAGCAACTAAGTATCTGCTTGCAAAGCTCAAGGACTTGCAATTCTTCGTTGGGGAGAGTATGGCTGACGATTGCTCTATCGTATTTGCATACTACAAGGAAGGAGCTACTGAACCAACATTTTTATACCTTGCCCCAGGTTTGAAGGAAGTCAAGTGCTGA

Protein sequence

MLVYTDLLSGDELLSDSFPYKEIENGMIWEVDGKWVVQGAIDVDIGANPSAEGAGEDEGVDDQAVKVVDIVDTFRLQEQPPLDKKLFIAYIKKYIKLLTPKLEGEKQEAFKKNIEGATKYLLAKLKDLQFFVGESMADDCSIVFAYYKEGATEPTFLYLAPGLKEVKC
Homology
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BLAST of Clc05G07740 vs. NCBI nr
Match: XP_022956345.1 (translationally-controlled tumor protein homolog [Cucurbita moschata] >XP_023526154.1 translationally-controlled tumor protein homolog [Cucurbita pepo subsp. pepo] >KAG6582209.1 Translationally-controlled tumor protein-like protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018608.1 Translationally-controlled tumor protein-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 328.2 bits (840), Expect = 4.2e-86
Identity = 162/168 (96.43%), Postives = 166/168 (98.81%), Query Frame = 0 

Query: 1   MLVYTDLLSGDELLSDSFPYKEIENGMIWEVDGKWVVQGAIDVDIGANPSAEGAGEDEGV 60
           MLVYTDLLSGDELLSDSFPYKEIENGMIWEVDGKWVVQGA+DVDIGANPSAEGAGEDEGV
Sbjct: 1   MLVYTDLLSGDELLSDSFPYKEIENGMIWEVDGKWVVQGAVDVDIGANPSAEGAGEDEGV 60

Query: 61  DDQAVKVVDIVDTFRLQEQPPLDKKLFIAYIKKYIKLLTPKLEGEKQEAFKKNIEGATKY 120
           DDQAVKVVDIVDTFRLQEQPPLDKKLFIAYIKKYIKL+TPKLEGEKQEAFKKNIEGATKY
Sbjct: 61  DDQAVKVVDIVDTFRLQEQPPLDKKLFIAYIKKYIKLVTPKLEGEKQEAFKKNIEGATKY 120

Query: 121 LLAKLKDLQFFVGESMADDCSIVFAYYKEGATEPTFLYLAPGLKEVKC 169
           LLAKLKDLQFFVGESM DD S+VFAYYKEGAT+PTFLYLAPGLKEVKC
Sbjct: 121 LLAKLKDLQFFVGESMHDDSSMVFAYYKEGATDPTFLYLAPGLKEVKC 168

[Close]
BLAST of Clc05G07740 vs. NCBI nr
Match: XP_038878221.1 (translationally-controlled tumor protein homolog [Benincasa hispida])

HSP 1 Score: 321.2 bits (822), Expect = 5.2e-84
Identity = 158/168 (94.05%), Postives = 163/168 (97.02%), Query Frame = 0 

Query: 1   MLVYTDLLSGDELLSDSFPYKEIENGMIWEVDGKWVVQGAIDVDIGANPSAEGAGEDEGV 60
           MLVYTDLLSGDELLSDSFPYKEIENGMIWEVDGKWVVQGAIDVDIGANPSAEGAG+DEGV
Sbjct: 1   MLVYTDLLSGDELLSDSFPYKEIENGMIWEVDGKWVVQGAIDVDIGANPSAEGAGDDEGV 60

Query: 61  DDQAVKVVDIVDTFRLQEQPPLDKKLFIAYIKKYIKLLTPKLEGEKQEAFKKNIEGATKY 120
           DDQAVKVVDIVDTFRLQEQPP+DKK  I YIKKYIK +TPKLEGEKQEAFKKNIEGATKY
Sbjct: 61  DDQAVKVVDIVDTFRLQEQPPMDKKTLITYIKKYIKAVTPKLEGEKQEAFKKNIEGATKY 120

Query: 121 LLAKLKDLQFFVGESMADDCSIVFAYYKEGATEPTFLYLAPGLKEVKC 169
           LL+KLKDLQFFVGESMADD SIVFAYYKEGAT+PTFLYLAPGLKEVKC
Sbjct: 121 LLSKLKDLQFFVGESMADDSSIVFAYYKEGATDPTFLYLAPGLKEVKC 168

[Close]
BLAST of Clc05G07740 vs. NCBI nr
Match: XP_022937958.1 (translationally-controlled tumor protein homolog [Cucurbita moschata] >XP_022973732.1 translationally-controlled tumor protein homolog [Cucurbita maxima] >XP_022975167.1 translationally-controlled tumor protein homolog [Cucurbita maxima] >XP_023539947.1 translationally-controlled tumor protein homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 304.3 bits (778), Expect = 6.5e-79
Identity = 149/168 (88.69%), Postives = 158/168 (94.05%), Query Frame = 0 

Query: 1   MLVYTDLLSGDELLSDSFPYKEIENGMIWEVDGKWVVQGAIDVDIGANPSAEGAGEDEGV 60
           MLVY DLL+GDELLSDSFPYKE+ENGMIWEV+GKWVVQGA+DVDIGANPSAEG GEDEGV
Sbjct: 1   MLVYQDLLTGDELLSDSFPYKELENGMIWEVEGKWVVQGAVDVDIGANPSAEGDGEDEGV 60

Query: 61  DDQAVKVVDIVDTFRLQEQPPLDKKLFIAYIKKYIKLLTPKLEGEKQEAFKKNIEGATKY 120
           DDQAVKVVDIVDTFRLQEQP +DKK FIAYIKK+IKLLTPKLEGEKQEAFKKNIEGATK+
Sbjct: 61  DDQAVKVVDIVDTFRLQEQPTMDKKQFIAYIKKFIKLLTPKLEGEKQEAFKKNIEGATKF 120

Query: 121 LLAKLKDLQFFVGESMADDCSIVFAYYKEGATEPTFLYLAPGLKEVKC 169
           LL KLKD QFFVGESM DD  IVFAYY+EGAT+PTFLYLAP LKEVKC
Sbjct: 121 LLPKLKDFQFFVGESMHDDSCIVFAYYREGATDPTFLYLAPALKEVKC 168

[Close]
BLAST of Clc05G07740 vs. NCBI nr
Match: Q2PS27.1 (RecName: Full=Translationally-controlled tumor protein homolog; Short=TCTP; AltName: Full=CmTCTP [Cucurbita maxima] >ABC02401.1 translationally controlled tumor protein [Cucurbita maxima])

HSP 1 Score: 302.8 bits (774), Expect = 1.9e-78
Identity = 148/168 (88.10%), Postives = 158/168 (94.05%), Query Frame = 0 

Query: 1   MLVYTDLLSGDELLSDSFPYKEIENGMIWEVDGKWVVQGAIDVDIGANPSAEGAGEDEGV 60
           MLVY DLL+GDELLSDSFPYKE+ENGMIWEV+GKWVVQGA+DVDIGANPSAEG GEDEGV
Sbjct: 1   MLVYQDLLTGDELLSDSFPYKELENGMIWEVEGKWVVQGAVDVDIGANPSAEGDGEDEGV 60

Query: 61  DDQAVKVVDIVDTFRLQEQPPLDKKLFIAYIKKYIKLLTPKLEGEKQEAFKKNIEGATKY 120
           DDQAVKVVDIVDTFRLQEQP +DKK FIAYIKK+IKLLTPKLEGEKQEAFKKNIEGATK+
Sbjct: 61  DDQAVKVVDIVDTFRLQEQPTMDKKQFIAYIKKFIKLLTPKLEGEKQEAFKKNIEGATKF 120

Query: 121 LLAKLKDLQFFVGESMADDCSIVFAYYKEGATEPTFLYLAPGLKEVKC 169
           LL KLKD +FFVGESM DD  IVFAYY+EGAT+PTFLYLAP LKEVKC
Sbjct: 121 LLPKLKDFRFFVGESMHDDSCIVFAYYREGATDPTFLYLAPALKEVKC 168

[Close]
BLAST of Clc05G07740 vs. NCBI nr
Match: XP_006840565.1 (translationally-controlled tumor protein homolog [Amborella trichopoda] >ERN02240.1 hypothetical protein AMTR_s00045p00225280 [Amborella trichopoda])

HSP 1 Score: 298.9 bits (764), Expect = 2.7e-77
Identity = 146/168 (86.90%), Postives = 157/168 (93.45%), Query Frame = 0 

Query: 1   MLVYTDLLSGDELLSDSFPYKEIENGMIWEVDGKWVVQGAIDVDIGANPSAEGAGEDEGV 60
           MLVY DLL+GDELLSDSFPYKE+ENGM+WEVDGKWVVQGAIDVDIGANPSAEGA E EGV
Sbjct: 1   MLVYQDLLTGDELLSDSFPYKEMENGMLWEVDGKWVVQGAIDVDIGANPSAEGADEGEGV 60

Query: 61  DDQAVKVVDIVDTFRLQEQPPLDKKLFIAYIKKYIKLLTPKLEGEKQEAFKKNIEGATKY 120
           DDQAVKVVDIVDTFRLQEQPP DKK+F++YIKKYIKLLTPKL+ E+QE FKK+IEGATKY
Sbjct: 61  DDQAVKVVDIVDTFRLQEQPPFDKKMFVSYIKKYIKLLTPKLDTEQQEIFKKHIEGATKY 120

Query: 121 LLAKLKDLQFFVGESMADDCSIVFAYYKEGATEPTFLYLAPGLKEVKC 169
           LL KLKDLQFFVGESM DD S+VFAYYKEGAT+PTFLY A GLKEVKC
Sbjct: 121 LLGKLKDLQFFVGESMHDDSSLVFAYYKEGATDPTFLYFAYGLKEVKC 168

[Close]
BLAST of Clc05G07740 vs. ExPASy Swiss-Prot
Match: Q2PS27 (Translationally-controlled tumor protein homolog OS=Cucurbita maxima OX=3661 GN=TCTP PE=2 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 2.5e-81
Identity = 148/168 (88.10%), Postives = 158/168 (94.05%), Query Frame = 0 

Query: 1   MLVYTDLLSGDELLSDSFPYKEIENGMIWEVDGKWVVQGAIDVDIGANPSAEGAGEDEGV 60
           MLVY DLL+GDELLSDSFPYKE+ENGMIWEV+GKWVVQGA+DVDIGANPSAEG GEDEGV
Sbjct: 1   MLVYQDLLTGDELLSDSFPYKELENGMIWEVEGKWVVQGAVDVDIGANPSAEGDGEDEGV 60

Query: 61  DDQAVKVVDIVDTFRLQEQPPLDKKLFIAYIKKYIKLLTPKLEGEKQEAFKKNIEGATKY 120
           DDQAVKVVDIVDTFRLQEQP +DKK FIAYIKK+IKLLTPKLEGEKQEAFKKNIEGATK+
Sbjct: 61  DDQAVKVVDIVDTFRLQEQPTMDKKQFIAYIKKFIKLLTPKLEGEKQEAFKKNIEGATKF 120

Query: 121 LLAKLKDLQFFVGESMADDCSIVFAYYKEGATEPTFLYLAPGLKEVKC 169
           LL KLKD +FFVGESM DD  IVFAYY+EGAT+PTFLYLAP LKEVKC
Sbjct: 121 LLPKLKDFRFFVGESMHDDSCIVFAYYREGATDPTFLYLAPALKEVKC 168

[Close]
BLAST of Clc05G07740 vs. ExPASy Swiss-Prot
Match: Q9M5I8 (Translationally-controlled tumor protein homolog OS=Cucumis melo OX=3656 GN=TCTP PE=2 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 8.9e-79
Identity = 142/168 (84.52%), Postives = 157/168 (93.45%), Query Frame = 0 

Query: 1   MLVYTDLLSGDELLSDSFPYKEIENGMIWEVDGKWVVQGAIDVDIGANPSAEGAGEDEGV 60
           MLVY DL+SGDELLSDSFPYKEIENGMIWEV+GKWVV+GA+DVDIGANPSAEG GEDEGV
Sbjct: 1   MLVYQDLVSGDELLSDSFPYKEIENGMIWEVEGKWVVKGAVDVDIGANPSAEGGGEDEGV 60

Query: 61  DDQAVKVVDIVDTFRLQEQPPLDKKLFIAYIKKYIKLLTPKLEGEKQEAFKKNIEGATKY 120
           DDQAVKVVDIVDTFRLQEQP +DKK+F++ IKKYIK LTP L+GE+QEAFK  IEGA KY
Sbjct: 61  DDQAVKVVDIVDTFRLQEQPSMDKKVFLSCIKKYIKKLTPLLQGEQQEAFKNKIEGAVKY 120

Query: 121 LLAKLKDLQFFVGESMADDCSIVFAYYKEGATEPTFLYLAPGLKEVKC 169
           LL K+KDLQFFVGESMADD ++VFAYYKEGAT+PTFLY+APGLKEVKC
Sbjct: 121 LLPKVKDLQFFVGESMADDSAMVFAYYKEGATDPTFLYIAPGLKEVKC 168

[Close]
BLAST of Clc05G07740 vs. ExPASy Swiss-Prot
Match: P43349 (Translationally-controlled tumor protein homolog OS=Solanum tuberosum OX=4113 GN=TCTP PE=2 SV=2)

HSP 1 Score: 289.7 bits (740), Expect = 2.2e-77
Identity = 138/168 (82.14%), Postives = 153/168 (91.07%), Query Frame = 0 

Query: 1   MLVYTDLLSGDELLSDSFPYKEIENGMIWEVDGKWVVQGAIDVDIGANPSAEGAGEDEGV 60
           MLVY DLL+GDELLSDSFPYKEI+NGM+WEV GKWVVQGA+DV+IGANPSAEG GEDEGV
Sbjct: 1   MLVYQDLLTGDELLSDSFPYKEIQNGMLWEVQGKWVVQGAVDVNIGANPSAEGGGEDEGV 60

Query: 61  DDQAVKVVDIVDTFRLQEQPPLDKKLFIAYIKKYIKLLTPKLEGEKQEAFKKNIEGATKY 120
           DDQAVKVVDIVDTFRLQEQP  DKK F+ YIK+YIK LTPKLEGE QEAFKKNIE ATK+
Sbjct: 61  DDQAVKVVDIVDTFRLQEQPAFDKKQFVTYIKRYIKNLTPKLEGEAQEAFKKNIESATKF 120

Query: 121 LLAKLKDLQFFVGESMADDCSIVFAYYKEGATEPTFLYLAPGLKEVKC 169
           LL+KLKD QFFVGE M DD ++VFAYYK+G+ +PTFLYLAPGLKE+KC
Sbjct: 121 LLSKLKDFQFFVGEGMHDDSALVFAYYKDGSADPTFLYLAPGLKEIKC 168

[Close]
BLAST of Clc05G07740 vs. ExPASy Swiss-Prot
Match: P35681 (Translationally-controlled tumor protein homolog OS=Oryza sativa subsp. japonica OX=39947 GN=TCTP PE=1 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 1.4e-76
Identity = 138/168 (82.14%), Postives = 153/168 (91.07%), Query Frame = 0 

Query: 1   MLVYTDLLSGDELLSDSFPYKEIENGMIWEVDGKWVVQGAIDVDIGANPSAEGAGEDEGV 60
           MLVY DLL+GDELLSDSFPY+EIENG++WEVDGKWVVQGAIDVDIGANPSAEG G+DEGV
Sbjct: 1   MLVYQDLLTGDELLSDSFPYREIENGILWEVDGKWVVQGAIDVDIGANPSAEGGGDDEGV 60

Query: 61  DDQAVKVVDIVDTFRLQEQPPLDKKLFIAYIKKYIKLLTPKLEGEKQEAFKKNIEGATKY 120
           DDQAVKVVDIVDTFRLQEQPP DKK F+ ++K+YIK L+ KL+ EKQE FKKNIEGATKY
Sbjct: 61  DDQAVKVVDIVDTFRLQEQPPFDKKQFVTFMKRYIKNLSAKLDAEKQEEFKKNIEGATKY 120

Query: 121 LLAKLKDLQFFVGESMADDCSIVFAYYKEGATEPTFLYLAPGLKEVKC 169
           LL KLKDLQFFVGESM DD  +VFAYYK+GAT+PTFLY + GLKEVKC
Sbjct: 121 LLGKLKDLQFFVGESMHDDGGLVFAYYKDGATDPTFLYFSHGLKEVKC 168

[Close]
BLAST of Clc05G07740 vs. ExPASy Swiss-Prot
Match: Q9M5G3 (Translationally-controlled tumor protein homolog OS=Hordeum vulgare OX=4513 GN=TCTP PE=2 SV=2)

HSP 1 Score: 285.4 bits (729), Expect = 4.1e-76
Identity = 139/168 (82.74%), Postives = 152/168 (90.48%), Query Frame = 0 

Query: 1   MLVYTDLLSGDELLSDSFPYKEIENGMIWEVDGKWVVQGAIDVDIGANPSAEGAGEDEGV 60
           MLVY D LSGDELLSDSFPY+E+ENG++WEVDG WVVQGA+DVDIGANPSAEG GEDEGV
Sbjct: 1   MLVYQDKLSGDELLSDSFPYRELENGVLWEVDGHWVVQGAVDVDIGANPSAEGGGEDEGV 60

Query: 61  DDQAVKVVDIVDTFRLQEQPPLDKKLFIAYIKKYIKLLTPKLEGEKQEAFKKNIEGATKY 120
           DDQAVKVVDIVDTFRLQEQP  DKK FIAYIK+YIK LT KLEGE+ +AFKKN+E ATKY
Sbjct: 61  DDQAVKVVDIVDTFRLQEQPAFDKKQFIAYIKRYIKNLTAKLEGEELDAFKKNVESATKY 120

Query: 121 LLAKLKDLQFFVGESMADDCSIVFAYYKEGATEPTFLYLAPGLKEVKC 169
           LL+KLKDLQFFVGESM DD S+VFAYY+EGA +PTFLY A GLKEVKC
Sbjct: 121 LLSKLKDLQFFVGESMHDDGSVVFAYYREGAADPTFLYFAHGLKEVKC 168

[Close]
BLAST of Clc05G07740 vs. ExPASy TrEMBL
Match: A0A6J1GXJ9 (translationally-controlled tumor protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111458073 PE=3 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 2.0e-86
Identity = 162/168 (96.43%), Postives = 166/168 (98.81%), Query Frame = 0 

Query: 1   MLVYTDLLSGDELLSDSFPYKEIENGMIWEVDGKWVVQGAIDVDIGANPSAEGAGEDEGV 60
           MLVYTDLLSGDELLSDSFPYKEIENGMIWEVDGKWVVQGA+DVDIGANPSAEGAGEDEGV
Sbjct: 1   MLVYTDLLSGDELLSDSFPYKEIENGMIWEVDGKWVVQGAVDVDIGANPSAEGAGEDEGV 60

Query: 61  DDQAVKVVDIVDTFRLQEQPPLDKKLFIAYIKKYIKLLTPKLEGEKQEAFKKNIEGATKY 120
           DDQAVKVVDIVDTFRLQEQPPLDKKLFIAYIKKYIKL+TPKLEGEKQEAFKKNIEGATKY
Sbjct: 61  DDQAVKVVDIVDTFRLQEQPPLDKKLFIAYIKKYIKLVTPKLEGEKQEAFKKNIEGATKY 120

Query: 121 LLAKLKDLQFFVGESMADDCSIVFAYYKEGATEPTFLYLAPGLKEVKC 169
           LLAKLKDLQFFVGESM DD S+VFAYYKEGAT+PTFLYLAPGLKEVKC
Sbjct: 121 LLAKLKDLQFFVGESMHDDSSMVFAYYKEGATDPTFLYLAPGLKEVKC 168

[Close]
BLAST of Clc05G07740 vs. ExPASy TrEMBL
Match: A0A6J1ICB3 (translationally-controlled tumor protein homolog OS=Cucurbita maxima OX=3661 GN=LOC111474201 PE=3 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 3.2e-79
Identity = 149/168 (88.69%), Postives = 158/168 (94.05%), Query Frame = 0 

Query: 1   MLVYTDLLSGDELLSDSFPYKEIENGMIWEVDGKWVVQGAIDVDIGANPSAEGAGEDEGV 60
           MLVY DLL+GDELLSDSFPYKE+ENGMIWEV+GKWVVQGA+DVDIGANPSAEG GEDEGV
Sbjct: 1   MLVYQDLLTGDELLSDSFPYKELENGMIWEVEGKWVVQGAVDVDIGANPSAEGDGEDEGV 60

Query: 61  DDQAVKVVDIVDTFRLQEQPPLDKKLFIAYIKKYIKLLTPKLEGEKQEAFKKNIEGATKY 120
           DDQAVKVVDIVDTFRLQEQP +DKK FIAYIKK+IKLLTPKLEGEKQEAFKKNIEGATK+
Sbjct: 61  DDQAVKVVDIVDTFRLQEQPTMDKKQFIAYIKKFIKLLTPKLEGEKQEAFKKNIEGATKF 120

Query: 121 LLAKLKDLQFFVGESMADDCSIVFAYYKEGATEPTFLYLAPGLKEVKC 169
           LL KLKD QFFVGESM DD  IVFAYY+EGAT+PTFLYLAP LKEVKC
Sbjct: 121 LLPKLKDFQFFVGESMHDDSCIVFAYYREGATDPTFLYLAPALKEVKC 168

[Close]
BLAST of Clc05G07740 vs. ExPASy TrEMBL
Match: A0A6J1FHH5 (translationally-controlled tumor protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111444190 PE=3 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 3.2e-79
Identity = 149/168 (88.69%), Postives = 158/168 (94.05%), Query Frame = 0 

Query: 1   MLVYTDLLSGDELLSDSFPYKEIENGMIWEVDGKWVVQGAIDVDIGANPSAEGAGEDEGV 60
           MLVY DLL+GDELLSDSFPYKE+ENGMIWEV+GKWVVQGA+DVDIGANPSAEG GEDEGV
Sbjct: 1   MLVYQDLLTGDELLSDSFPYKELENGMIWEVEGKWVVQGAVDVDIGANPSAEGDGEDEGV 60

Query: 61  DDQAVKVVDIVDTFRLQEQPPLDKKLFIAYIKKYIKLLTPKLEGEKQEAFKKNIEGATKY 120
           DDQAVKVVDIVDTFRLQEQP +DKK FIAYIKK+IKLLTPKLEGEKQEAFKKNIEGATK+
Sbjct: 61  DDQAVKVVDIVDTFRLQEQPTMDKKQFIAYIKKFIKLLTPKLEGEKQEAFKKNIEGATKF 120

Query: 121 LLAKLKDLQFFVGESMADDCSIVFAYYKEGATEPTFLYLAPGLKEVKC 169
           LL KLKD QFFVGESM DD  IVFAYY+EGAT+PTFLYLAP LKEVKC
Sbjct: 121 LLPKLKDFQFFVGESMHDDSCIVFAYYREGATDPTFLYLAPALKEVKC 168

[Close]
BLAST of Clc05G07740 vs. ExPASy TrEMBL
Match: A0A068TRC3 (TCTP domain-containing protein OS=Coffea canephora OX=49390 GN=GSCOC_T00025805001 PE=3 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 1.3e-77
Identity = 143/168 (85.12%), Postives = 157/168 (93.45%), Query Frame = 0 

Query: 1   MLVYTDLLSGDELLSDSFPYKEIENGMIWEVDGKWVVQGAIDVDIGANPSAEGAGEDEGV 60
           MLVY DLL+GDELLSDSFPYKEIENG++WEV+GKWVVQGA++VDIGANPSAEG GEDEGV
Sbjct: 1   MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVEVDIGANPSAEGCGEDEGV 60

Query: 61  DDQAVKVVDIVDTFRLQEQPPLDKKLFIAYIKKYIKLLTPKLEGEKQEAFKKNIEGATKY 120
           DDQAVKVVDIVDTFRLQEQPP DKK F+AYIKKYIKLLTPK++ EKQE FKKNIEGATKY
Sbjct: 61  DDQAVKVVDIVDTFRLQEQPPFDKKQFVAYIKKYIKLLTPKIDAEKQEHFKKNIEGATKY 120

Query: 121 LLAKLKDLQFFVGESMADDCSIVFAYYKEGATEPTFLYLAPGLKEVKC 169
           LL+KL DLQFFVGESMADD ++VFAYYK+GAT+PTFLY   GLKEVKC
Sbjct: 121 LLSKLSDLQFFVGESMADDSTLVFAYYKDGATDPTFLYFGVGLKEVKC 168

[Close]
BLAST of Clc05G07740 vs. ExPASy TrEMBL
Match: W1P5L1 (TCTP domain-containing protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00045p00225280 PE=3 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 1.3e-77
Identity = 146/168 (86.90%), Postives = 157/168 (93.45%), Query Frame = 0 

Query: 1   MLVYTDLLSGDELLSDSFPYKEIENGMIWEVDGKWVVQGAIDVDIGANPSAEGAGEDEGV 60
           MLVY DLL+GDELLSDSFPYKE+ENGM+WEVDGKWVVQGAIDVDIGANPSAEGA E EGV
Sbjct: 1   MLVYQDLLTGDELLSDSFPYKEMENGMLWEVDGKWVVQGAIDVDIGANPSAEGADEGEGV 60

Query: 61  DDQAVKVVDIVDTFRLQEQPPLDKKLFIAYIKKYIKLLTPKLEGEKQEAFKKNIEGATKY 120
           DDQAVKVVDIVDTFRLQEQPP DKK+F++YIKKYIKLLTPKL+ E+QE FKK+IEGATKY
Sbjct: 61  DDQAVKVVDIVDTFRLQEQPPFDKKMFVSYIKKYIKLLTPKLDTEQQEIFKKHIEGATKY 120

Query: 121 LLAKLKDLQFFVGESMADDCSIVFAYYKEGATEPTFLYLAPGLKEVKC 169
           LL KLKDLQFFVGESM DD S+VFAYYKEGAT+PTFLY A GLKEVKC
Sbjct: 121 LLGKLKDLQFFVGESMHDDSSLVFAYYKEGATDPTFLYFAYGLKEVKC 168

[Close]
BLAST of Clc05G07740 vs. TAIR 10
Match: AT3G16640.1 (translationally controlled tumor protein )

HSP 1 Score: 266.5 bits (680), Expect = 1.4e-71
Identity = 131/168 (77.98%), Postives = 142/168 (84.52%), Query Frame = 0 

Query: 1   MLVYTDLLSGDELLSDSFPYKEIENGMIWEVDGKWVVQGAIDVDIGANPSAEGAGEDEGV 60
           MLVY DLL+GDELLSDSFPYKEIENG++WEV+GKWV  GA+DV+IGANPSAE  GEDEGV
Sbjct: 1   MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVTVGAVDVNIGANPSAEEGGEDEGV 60

Query: 61  DDQAVKVVDIVDTFRLQEQPPLDKKLFIAYIKKYIKLLTPKLEGEKQEAFKKNIEGATKY 120
           DD   KVVDIVDTFRLQEQP  DKK FIAYIKKYIKLLTPKL  E Q  FKK IEGATK+
Sbjct: 61  DDSTQKVVDIVDTFRLQEQPTYDKKGFIAYIKKYIKLLTPKLSEEDQAVFKKGIEGATKF 120

Query: 121 LLAKLKDLQFFVGESMADDCSIVFAYYKEGATEPTFLYLAPGLKEVKC 169
           LL +L D QFFVGE M DD ++VFAYYKEG+T PTFLY A GLKEVKC
Sbjct: 121 LLPRLSDFQFFVGEGMHDDSTLVFAYYKEGSTNPTFLYFAHGLKEVKC 168

[Close]
BLAST of Clc05G07740 vs. TAIR 10
Match: AT3G05540.1 (Methionine sulfoxide reductase (MSS4-like) family protein )

HSP 1 Score: 262.3 bits (669), Expect = 2.7e-70
Identity = 127/169 (75.15%), Postives = 150/169 (88.76%), Query Frame = 0 

Query: 1   MLVYTDLLSGDELLSDSFPYKEIENGMIWEVDGKWVVQGAIDVDIGANPSAEGAGEDEGV 60
           MLVY D+L+GDELLSDSFPYKEIENGM+WEV+GKWVV+GA+D DIGANP  EG GEDEGV
Sbjct: 1   MLVYQDILTGDELLSDSFPYKEIENGMLWEVEGKWVVKGAMDFDIGANPGEEG-GEDEGV 60

Query: 61  DDQAVKVVDIVDTFRLQEQPPLDKKLFIAYIKKYIKLLTPKLEGEKQEAFKKNIEGATKY 120
           DDQAVKVVDI+DTFRLQEQP  DKK F+ ++K+YIK L+PKL+ E QE FKK+IE ATK+
Sbjct: 61  DDQAVKVVDIIDTFRLQEQPSFDKKQFVMFMKRYIKQLSPKLDSENQELFKKHIESATKF 120

Query: 121 LLAKLKDLQFFVGESM-ADDCSIVFAYYKEGATEPTFLYLAPGLKEVKC 169
           L++KLKD QFFVGESM  ++ S+VFAYY+EGAT+PTFLYLA GLKE+KC
Sbjct: 121 LMSKLKDFQFFVGESMEGEEGSLVFAYYREGATDPTFLYLAYGLKEIKC 168

The following BLAST results are available for this feature:
BLAST of Clc05G07740 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022956345.14.2e-8696.43translationally-controlled tumor protein homolog [Cucurbita moschata] >XP_023526... [more]
XP_038878221.15.2e-8494.05translationally-controlled tumor protein homolog [Benincasa hispida][more]
XP_022937958.16.5e-7988.69translationally-controlled tumor protein homolog [Cucurbita moschata] >XP_022973... [more]
Q2PS27.11.9e-7888.10RecName: Full=Translationally-controlled tumor protein homolog; Short=TCTP; AltN... [more]
XP_006840565.12.7e-7786.90translationally-controlled tumor protein homolog [Amborella trichopoda] >ERN0224... [more]
BLAST of Clc05G07740 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q2PS272.5e-8188.10Translationally-controlled tumor protein homolog OS=Cucurbita maxima OX=3661 GN=... [more]
Q9M5I88.9e-7984.52Translationally-controlled tumor protein homolog OS=Cucumis melo OX=3656 GN=TCTP... [more]
P433492.2e-7782.14Translationally-controlled tumor protein homolog OS=Solanum tuberosum OX=4113 GN... [more]
P356811.4e-7682.14Translationally-controlled tumor protein homolog OS=Oryza sativa subsp. japonica... [more]
Q9M5G34.1e-7682.74Translationally-controlled tumor protein homolog OS=Hordeum vulgare OX=4513 GN=T... [more]
BLAST of Clc05G07740 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1GXJ92.0e-8696.43translationally-controlled tumor protein homolog OS=Cucurbita moschata OX=3662 G... [more]
A0A6J1ICB33.2e-7988.69translationally-controlled tumor protein homolog OS=Cucurbita maxima OX=3661 GN=... [more]
A0A6J1FHH53.2e-7988.69translationally-controlled tumor protein homolog OS=Cucurbita moschata OX=3662 G... [more]
A0A068TRC31.3e-7785.12TCTP domain-containing protein OS=Coffea canephora OX=49390 GN=GSCOC_T0002580500... [more]
W1P5L11.3e-7786.90TCTP domain-containing protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00045p0... [more]
BLAST of Clc05G07740 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G16640.11.4e-7177.98translationally controlled tumor protein [more]
AT3G05540.12.7e-7075.15Methionine sulfoxide reductase (MSS4-like) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018105Translationally controlled tumour proteinPRINTSPR01653TCTPROTEINcoord: 1..21
score: 63.78
coord: 46..57
score: 67.26
coord: 60..79
score: 60.36
IPR018105Translationally controlled tumour proteinPFAMPF00838TCTPcoord: 1..164
e-value: 5.3E-56
score: 189.5
IPR018105Translationally controlled tumour proteinPANTHERPTHR11991TRANSLATIONALLY CONTROLLED TUMOR PROTEIN-RELATEDcoord: 1..168
IPR011323Mss4/translationally controlled tumour-associated TCTPGENE3D2.170.150.10Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain Acoord: 1..168
e-value: 1.3E-56
score: 193.5
NoneNo IPR availablePANTHERPTHR11991:SF11TRANSLATIONALLY-CONTROLLED TUMOR PROTEIN HOMOLOGcoord: 1..168
IPR018103Translationally controlled tumour protein, conserved sitePROSITEPS01002TCTP_1coord: 45..55
IPR034737Translationally controlled tumour protein (TCTP) domainPROSITEPS51797TCTP_3coord: 1..168
score: 59.239151
IPR011057Mss4-like superfamilySUPERFAMILY51316Mss4-likecoord: 1..168

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc05G07740.1Clc05G07740.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010252 auxin homeostasis
biological_process GO:0042127 regulation of cell population proliferation
biological_process GO:0048768 root hair cell tip growth
biological_process GO:0090333 regulation of stomatal closure
biological_process GO:0040014 regulation of multicellular organism growth
biological_process GO:0051301 cell division
biological_process GO:0007346 regulation of mitotic cell cycle
biological_process GO:0001558 regulation of cell growth
biological_process GO:0031117 positive regulation of microtubule depolymerization
biological_process GO:0009860 pollen tube growth
biological_process GO:0048527 lateral root development
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0009819 drought recovery
cellular_component GO:0005737 cytoplasm
cellular_component GO:0090406 pollen tube
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0008017 microtubule binding
molecular_function GO:0019904 protein domain specific binding