Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGGGGTTTGGCGTTTTCCCTCTCGGTAGCTGCTTCGATGGATGCCGAGACCACGCTCAAGCGTCAGGATTCGGCACTCGAATATGGAACTTGAGCGACAGGCCGGTGGAGCTGCAGATAAGGGTGGGATCAATATTGAAAAAAGTGCATAGTTTGAAGCCAGGATGCTCAAAGAGGTTGAAATGTAAGAGCATTTACAAAGCATACATGCCAGGAAGGAGTATGAAGAGCTTGCTTTATTATTATGATGAAGCTTGCCAACCTTATGTTTGGATACATGAAAGTGGAGGTGATTCCATGAGAATGGTGAAGCAGCAATACATCAGTCTTGAAGATCTAAGGGAGTTTTCTGAGATCAGAATCTTTAGGGATCATCAACGTGGCTGTGTATCGGTGCGCAAGAAACCGAGGCCCGATTTTTGCTGA
mRNA sequence
ATGCCGGGGTTTGGCGTTTTCCCTCTCGGTAGCTGCTTCGATGGATGCCGAGACCACGCTCAAGCGTCAGGATTCGGCACTCGAATATGGAACTTGAGCGACAGGCCGGTGGAGCTGCAGATAAGGGTGGGATCAATATTGAAAAAAGTGCATAGTTTGAAGCCAGGATGCTCAAAGAGGTTGAAATGTAAGAGCATTTACAAAGCATACATGCCAGGAAGGAGTATGAAGAGCTTGCTTTATTATTATGATGAAGCTTGCCAACCTTATGTTTGGATACATGAAAGTGGAGGTGATTCCATGAGAATGGTGAAGCAGCAATACATCAGTCTTGAAGATCTAAGGGAGTTTTCTGAGATCAGAATCTTTAGGGATCATCAACGTGGCTGTGTATCGGTGCGCAAGAAACCGAGGCCCGATTTTTGCTGA
Coding sequence (CDS)
ATGCCGGGGTTTGGCGTTTTCCCTCTCGGTAGCTGCTTCGATGGATGCCGAGACCACGCTCAAGCGTCAGGATTCGGCACTCGAATATGGAACTTGAGCGACAGGCCGGTGGAGCTGCAGATAAGGGTGGGATCAATATTGAAAAAAGTGCATAGTTTGAAGCCAGGATGCTCAAAGAGGTTGAAATGTAAGAGCATTTACAAAGCATACATGCCAGGAAGGAGTATGAAGAGCTTGCTTTATTATTATGATGAAGCTTGCCAACCTTATGTTTGGATACATGAAAGTGGAGGTGATTCCATGAGAATGGTGAAGCAGCAATACATCAGTCTTGAAGATCTAAGGGAGTTTTCTGAGATCAGAATCTTTAGGGATCATCAACGTGGCTGTGTATCGGTGCGCAAGAAACCGAGGCCCGATTTTTGCTGA
Protein sequence
MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKRLKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLEDLREFSEIRIFRDHQRGCVSVRKKPRPDFC
Homology
BLAST of Clc05G06890 vs. NCBI nr
Match:
XP_008438723.1 (PREDICTED: uncharacterized protein LOC103483746 [Cucumis melo] >KAA0049398.1 uncharacterized protein E6C27_scaffold171G006430 [Cucumis melo var. makuwa] >TYK17161.1 uncharacterized protein E5676_scaffold434G00050 [Cucumis melo var. makuwa])
HSP 1 Score: 304.7 bits (779), Expect = 4.2e-79
Identity = 139/142 (97.89%), Postives = 142/142 (100.00%), Query Frame = 0
Query: 1 MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
MPGFGVFPLGSCFDGCRDHAQASGFGTR+WNLSDRPVELQIRVGSILKKVHSLKPGCSKR
Sbjct: 1 MPGFGVFPLGSCFDGCRDHAQASGFGTRVWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
Query: 61 LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLEDLREFSEI 120
LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQY+SLEDLREFSEI
Sbjct: 61 LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI 120
Query: 121 RIFRDHQRGCVSVRKKPRPDFC 143
RIFRDHQRGC+SVRKKPRPDFC
Sbjct: 121 RIFRDHQRGCISVRKKPRPDFC 142
BLAST of Clc05G06890 vs. NCBI nr
Match:
XP_011650993.1 (uncharacterized protein LOC105434839 [Cucumis sativus] >KGN57027.1 hypothetical protein Csa_009946 [Cucumis sativus])
HSP 1 Score: 302.0 bits (772), Expect = 2.7e-78
Identity = 139/142 (97.89%), Postives = 141/142 (99.30%), Query Frame = 0
Query: 1 MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR
Sbjct: 1 MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
Query: 61 LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLEDLREFSEI 120
LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQY+SLEDLREFSEI
Sbjct: 61 LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI 120
Query: 121 RIFRDHQRGCVSVRKKPRPDFC 143
RIFRDHQRGC+SVRKK RPDFC
Sbjct: 121 RIFRDHQRGCISVRKKQRPDFC 142
BLAST of Clc05G06890 vs. NCBI nr
Match:
XP_038875149.1 (uncharacterized protein LOC120067683 [Benincasa hispida])
HSP 1 Score: 301.6 bits (771), Expect = 3.6e-78
Identity = 139/142 (97.89%), Postives = 141/142 (99.30%), Query Frame = 0
Query: 1 MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILK+VH+LKPGCSKR
Sbjct: 1 MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKRVHNLKPGCSKR 60
Query: 61 LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLEDLREFSEI 120
LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLEDLREFSEI
Sbjct: 61 LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLEDLREFSEI 120
Query: 121 RIFRDHQRGCVSVRKKPRPDFC 143
RIFRDHQRGCVSV KKPRPDFC
Sbjct: 121 RIFRDHQRGCVSVHKKPRPDFC 142
BLAST of Clc05G06890 vs. NCBI nr
Match:
XP_022936946.1 (uncharacterized protein LOC111443378 [Cucurbita moschata] >KAG6597467.1 hypothetical protein SDJN03_10647, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028926.1 hypothetical protein SDJN02_10109, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 297.7 bits (761), Expect = 5.2e-77
Identity = 139/142 (97.89%), Postives = 140/142 (98.59%), Query Frame = 0
Query: 1 MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR
Sbjct: 1 MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
Query: 61 LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLEDLREFSEI 120
LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQ+ISLEDLREFSEI
Sbjct: 61 LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQFISLEDLREFSEI 120
Query: 121 RIFRDHQRGCVSVRKKPRPDFC 143
RIFRDHQRGCVSVRKKPR FC
Sbjct: 121 RIFRDHQRGCVSVRKKPRLGFC 142
BLAST of Clc05G06890 vs. NCBI nr
Match:
XP_023522910.1 (uncharacterized protein LOC111786960 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 297.4 bits (760), Expect = 6.8e-77
Identity = 138/142 (97.18%), Postives = 140/142 (98.59%), Query Frame = 0
Query: 1 MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRP+ELQIRVGSILKKVHSLKPGCSKR
Sbjct: 1 MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPIELQIRVGSILKKVHSLKPGCSKR 60
Query: 61 LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLEDLREFSEI 120
LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQ+ISLEDLREFSEI
Sbjct: 61 LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQFISLEDLREFSEI 120
Query: 121 RIFRDHQRGCVSVRKKPRPDFC 143
RIFRDHQRGCVSVRKKPR FC
Sbjct: 121 RIFRDHQRGCVSVRKKPRLGFC 142
BLAST of Clc05G06890 vs. ExPASy TrEMBL
Match:
A0A5A7U2C9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G00050 PE=4 SV=1)
HSP 1 Score: 304.7 bits (779), Expect = 2.0e-79
Identity = 139/142 (97.89%), Postives = 142/142 (100.00%), Query Frame = 0
Query: 1 MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
MPGFGVFPLGSCFDGCRDHAQASGFGTR+WNLSDRPVELQIRVGSILKKVHSLKPGCSKR
Sbjct: 1 MPGFGVFPLGSCFDGCRDHAQASGFGTRVWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
Query: 61 LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLEDLREFSEI 120
LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQY+SLEDLREFSEI
Sbjct: 61 LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI 120
Query: 121 RIFRDHQRGCVSVRKKPRPDFC 143
RIFRDHQRGC+SVRKKPRPDFC
Sbjct: 121 RIFRDHQRGCISVRKKPRPDFC 142
BLAST of Clc05G06890 vs. ExPASy TrEMBL
Match:
A0A1S3AWR3 (uncharacterized protein LOC103483746 OS=Cucumis melo OX=3656 GN=LOC103483746 PE=4 SV=1)
HSP 1 Score: 304.7 bits (779), Expect = 2.0e-79
Identity = 139/142 (97.89%), Postives = 142/142 (100.00%), Query Frame = 0
Query: 1 MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
MPGFGVFPLGSCFDGCRDHAQASGFGTR+WNLSDRPVELQIRVGSILKKVHSLKPGCSKR
Sbjct: 1 MPGFGVFPLGSCFDGCRDHAQASGFGTRVWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
Query: 61 LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLEDLREFSEI 120
LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQY+SLEDLREFSEI
Sbjct: 61 LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI 120
Query: 121 RIFRDHQRGCVSVRKKPRPDFC 143
RIFRDHQRGC+SVRKKPRPDFC
Sbjct: 121 RIFRDHQRGCISVRKKPRPDFC 142
BLAST of Clc05G06890 vs. ExPASy TrEMBL
Match:
A0A0A0L8V0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G150060 PE=4 SV=1)
HSP 1 Score: 302.0 bits (772), Expect = 1.3e-78
Identity = 139/142 (97.89%), Postives = 141/142 (99.30%), Query Frame = 0
Query: 1 MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR
Sbjct: 1 MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
Query: 61 LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLEDLREFSEI 120
LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQY+SLEDLREFSEI
Sbjct: 61 LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI 120
Query: 121 RIFRDHQRGCVSVRKKPRPDFC 143
RIFRDHQRGC+SVRKK RPDFC
Sbjct: 121 RIFRDHQRGCISVRKKQRPDFC 142
BLAST of Clc05G06890 vs. ExPASy TrEMBL
Match:
A0A6J1F8W2 (uncharacterized protein LOC111443378 OS=Cucurbita moschata OX=3662 GN=LOC111443378 PE=4 SV=1)
HSP 1 Score: 297.7 bits (761), Expect = 2.5e-77
Identity = 139/142 (97.89%), Postives = 140/142 (98.59%), Query Frame = 0
Query: 1 MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR
Sbjct: 1 MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
Query: 61 LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLEDLREFSEI 120
LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQ+ISLEDLREFSEI
Sbjct: 61 LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQFISLEDLREFSEI 120
Query: 121 RIFRDHQRGCVSVRKKPRPDFC 143
RIFRDHQRGCVSVRKKPR FC
Sbjct: 121 RIFRDHQRGCVSVRKKPRLGFC 142
BLAST of Clc05G06890 vs. ExPASy TrEMBL
Match:
A0A6J1I9A2 (LOW QUALITY PROTEIN: uncharacterized protein LOC111472255 OS=Cucurbita maxima OX=3661 GN=LOC111472255 PE=4 SV=1)
HSP 1 Score: 294.3 bits (752), Expect = 2.8e-76
Identity = 137/142 (96.48%), Postives = 138/142 (97.18%), Query Frame = 0
Query: 1 MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
MPGFGVFPLGSCFDGCRDH QASGFGTRIWNLSDRPVELQIRVG ILKKVHSLKPGCSKR
Sbjct: 1 MPGFGVFPLGSCFDGCRDHTQASGFGTRIWNLSDRPVELQIRVGXILKKVHSLKPGCSKR 60
Query: 61 LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLEDLREFSEI 120
LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQ+ISLEDLREFSEI
Sbjct: 61 LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQFISLEDLREFSEI 120
Query: 121 RIFRDHQRGCVSVRKKPRPDFC 143
RIFRDHQRGCVSVRKKPR FC
Sbjct: 121 RIFRDHQRGCVSVRKKPRLGFC 142
BLAST of Clc05G06890 vs. TAIR 10
Match:
AT3G06145.1 (unknown protein; Has 15 Blast hits to 15 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 163.7 bits (413), Expect = 1.1e-40
Identity = 78/135 (57.78%), Postives = 101/135 (74.81%), Query Frame = 0
Query: 9 LGSCFDGCRDH-----AQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKRLKC 68
L C+ GC D + TR WNLSDRPVELQIRVGSILK+VH+LKPG SK+L+
Sbjct: 28 LRQCYGGCGDRTHLLPCSIATTSTRFWNLSDRPVELQIRVGSILKRVHTLKPGRSKKLRH 87
Query: 69 KSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLEDLREFSEIRIF 128
+SI++AY+ + + L YYD+ C PYVW+HE+G D +MVKQQY+SLEDLR++SEIR+F
Sbjct: 88 RSIHRAYVDDQEGRRWL-YYDDTCLPYVWVHETGTDLSKMVKQQYVSLEDLRDYSEIRVF 147
Query: 129 RDHQRGCVSVRKKPR 139
+D QRGCV+V K+ R
Sbjct: 148 KDLQRGCVAVEKRDR 161
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_008438723.1 | 4.2e-79 | 97.89 | PREDICTED: uncharacterized protein LOC103483746 [Cucumis melo] >KAA0049398.1 unc... | [more] |
| XP_011650993.1 | 2.7e-78 | 97.89 | uncharacterized protein LOC105434839 [Cucumis sativus] >KGN57027.1 hypothetical ... | [more] |
| XP_038875149.1 | 3.6e-78 | 97.89 | uncharacterized protein LOC120067683 [Benincasa hispida] | [more] |
| XP_022936946.1 | 5.2e-77 | 97.89 | uncharacterized protein LOC111443378 [Cucurbita moschata] >KAG6597467.1 hypothet... | [more] |
| XP_023522910.1 | 6.8e-77 | 97.18 | uncharacterized protein LOC111786960 [Cucurbita pepo subsp. pepo] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7U2C9 | 2.0e-79 | 97.89 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A1S3AWR3 | 2.0e-79 | 97.89 | uncharacterized protein LOC103483746 OS=Cucumis melo OX=3656 GN=LOC103483746 PE=... | [more] |
| A0A0A0L8V0 | 1.3e-78 | 97.89 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G150060 PE=4 SV=1 | [more] |
| A0A6J1F8W2 | 2.5e-77 | 97.89 | uncharacterized protein LOC111443378 OS=Cucurbita moschata OX=3662 GN=LOC1114433... | [more] |
| A0A6J1I9A2 | 2.8e-76 | 96.48 | LOW QUALITY PROTEIN: uncharacterized protein LOC111472255 OS=Cucurbita maxima OX... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT3G06145.1 | 1.1e-40 | 57.78 | unknown protein; Has 15 Blast hits to 15 proteins in 7 species: Archae - 0; Bact... | [more] |
