Clc05G06470 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc05G06470
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Ferredoxin
Location	ClcChr05: 4749533 .. 4749976 (+)
RNA-Seq Expression	Clc05G06470
Synteny	Clc05G06470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAACTCTTCATTTTGTTCCATCCGCTTTCTCTCTACCCAAACAAAAGCAACCCACCAAGCTTTCCTCAGTCTTCAAGCTCAGACCCACAACCCAAATAGGCTGCTCAAGGCGGTGCTTGGTGGTCCGGTCATACAAAGTAGTAATCGAGCACGAGGGGAAGTCCACCGAGCTGGAGGTCGATGCCGACGAGAGCATATTAAGCAGTGCATTGGACAATGGCTTAGAAATTCCTCACGATTGCAAGCTTGGAGTGTGCATGACTTGCCCTGCTCGCCTTGTCAGTGGCACCGTCGACCAAAGCGAAGGTATGTTGAGCGATGACGTTGTGGAGCAAGGCTATTCGCTTCTGTGTGTGGCTTATCCCCGCTCAGACTGCCACATAAAAACCATCCCTGAGGAAGAATTGTTGGCACTTCAATTAGCCACGGCTAATGACTAA

mRNA sequence

ATGGCAACTCTTCATTTTGTTCCATCCGCTTTCTCTCTACCCAAACAAAAGCAACCCACCAAGCTTTCCTCAGTCTTCAAGCTCAGACCCACAACCCAAATAGGCTGCTCAAGGCGGTGCTTGGTGGTCCGGTCATACAAAGTAGTAATCGAGCACGAGGGGAAGTCCACCGAGCTGGAGGTCGATGCCGACGAGAGCATATTAAGCAGTGCATTGGACAATGGCTTAGAAATTCCTCACGATTGCAAGCTTGGAGTGTGCATGACTTGCCCTGCTCGCCTTGTCAGTGGCACCGTCGACCAAAGCGAAGGTATGTTGAGCGATGACGTTGTGGAGCAAGGCTATTCGCTTCTGTGTGTGGCTTATCCCCGCTCAGACTGCCACATAAAAACCATCCCTGAGGAAGAATTGTTGGCACTTCAATTAGCCACGGCTAATGACTAA

Coding sequence (CDS)

ATGGCAACTCTTCATTTTGTTCCATCCGCTTTCTCTCTACCCAAACAAAAGCAACCCACCAAGCTTTCCTCAGTCTTCAAGCTCAGACCCACAACCCAAATAGGCTGCTCAAGGCGGTGCTTGGTGGTCCGGTCATACAAAGTAGTAATCGAGCACGAGGGGAAGTCCACCGAGCTGGAGGTCGATGCCGACGAGAGCATATTAAGCAGTGCATTGGACAATGGCTTAGAAATTCCTCACGATTGCAAGCTTGGAGTGTGCATGACTTGCCCTGCTCGCCTTGTCAGTGGCACCGTCGACCAAAGCGAAGGTATGTTGAGCGATGACGTTGTGGAGCAAGGCTATTCGCTTCTGTGTGTGGCTTATCCCCGCTCAGACTGCCACATAAAAACCATCCCTGAGGAAGAATTGTTGGCACTTCAATTAGCCACGGCTAATGACTAA

Protein sequence

MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQIGCSRRCLVVRSYKVVIEHEGKSTELEVDADESILSSALDNGLEIPHDCKLGVCMTCPARLVSGTVDQSEGMLSDDVVEQGYSLLCVAYPRSDCHIKTIPEEELLALQLATAND

Homology

[Close]

BLAST of Clc05G06470 vs. NCBI nr
Match: XP_023526556.1 (uncharacterized protein LOC111790026 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 278.9 bits (712), Expect = 2.6e-71
Identity = 137/147 (93.20%), Postives = 143/147 (97.28%), Query Frame = 0


Query: 1   MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQIGCSRRCLVVRSYKVVIEHEGKSTELE 60
           MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQIGCS+R LVVRSYKVVIEHEG++TELE
Sbjct: 1   MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQIGCSQRRLVVRSYKVVIEHEGQTTELE 60

Query: 61  VDADESILSSALDNGLEIPHDCKLGVCMTCPARLVSGTVDQSEGMLSDDVVEQGYSLLCV 120
           VDADESIL SALD GL+IPHDCKLGVCMTCPARLVSG VDQSEGMLSDDVVE+GYSLLCV
Sbjct: 61  VDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVDQSEGMLSDDVVEKGYSLLCV 120

Query: 121 AYPRSDCHIKTIPEEELLALQLATAND 148
           AYPRSDCHI+TIPEEELLALQLATAND
Sbjct: 121 AYPRSDCHIQTIPEEELLALQLATAND 147

[Close]

BLAST of Clc05G06470 vs. NCBI nr
Match: XP_022956084.1 (uncharacterized protein LOC111457884 [Cucurbita moschata] >KAG7018707.1 petF2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 278.1 bits (710), Expect = 4.4e-71
Identity = 136/147 (92.52%), Postives = 143/147 (97.28%), Query Frame = 0


Query: 1   MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQIGCSRRCLVVRSYKVVIEHEGKSTELE 60
           MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQ+GCS+R LVVRSYKVVIEHEG++TELE
Sbjct: 1   MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQLGCSQRRLVVRSYKVVIEHEGQTTELE 60

Query: 61  VDADESILSSALDNGLEIPHDCKLGVCMTCPARLVSGTVDQSEGMLSDDVVEQGYSLLCV 120
           VDADESIL SALD GL+IPHDCKLGVCMTCPARLVSG VDQSEGMLSDDVVE+GYSLLCV
Sbjct: 61  VDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVDQSEGMLSDDVVEKGYSLLCV 120

Query: 121 AYPRSDCHIKTIPEEELLALQLATAND 148
           AYPRSDCHI+TIPEEELLALQLATAND
Sbjct: 121 AYPRSDCHIQTIPEEELLALQLATAND 147

[Close]

BLAST of Clc05G06470 vs. NCBI nr
Match: XP_022979429.1 (uncharacterized protein LOC111479154 [Cucurbita maxima])

HSP 1 Score: 276.2 bits (705), Expect = 1.7e-70
Identity = 136/147 (92.52%), Postives = 143/147 (97.28%), Query Frame = 0


Query: 1   MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQIGCSRRCLVVRSYKVVIEHEGKSTELE 60
           MATLHFVPSAFSLPKQKQPTKLSSVFKLR TTQIGCS+R LVVRSYKVVIEHEG++TELE
Sbjct: 11  MATLHFVPSAFSLPKQKQPTKLSSVFKLRQTTQIGCSQRRLVVRSYKVVIEHEGQTTELE 70

Query: 61  VDADESILSSALDNGLEIPHDCKLGVCMTCPARLVSGTVDQSEGMLSDDVVEQGYSLLCV 120
           VDADESIL+SALD GL+IPHDCKLGVCMTCPARLVSG VDQSEGMLSDDVVE+GYSLLCV
Sbjct: 71  VDADESILNSALDKGLDIPHDCKLGVCMTCPARLVSGAVDQSEGMLSDDVVEKGYSLLCV 130

Query: 121 AYPRSDCHIKTIPEEELLALQLATAND 148
           AYPRSDCHI+TIPEEELLALQLATAND
Sbjct: 131 AYPRSDCHIQTIPEEELLALQLATAND 157

[Close]

BLAST of Clc05G06470 vs. NCBI nr
Match: KAG6582296.1 (Ferredoxin C 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 275.8 bits (704), Expect = 2.2e-70
Identity = 136/147 (92.52%), Postives = 142/147 (96.60%), Query Frame = 0


Query: 1   MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQIGCSRRCLVVRSYKVVIEHEGKSTELE 60
           MATLHFVPSAFSLPKQKQPTKLSSVFKLR TTQIGCS+R LVVRSYKVVIEHEG++TELE
Sbjct: 133 MATLHFVPSAFSLPKQKQPTKLSSVFKLRTTTQIGCSQRRLVVRSYKVVIEHEGQTTELE 192

Query: 61  VDADESILSSALDNGLEIPHDCKLGVCMTCPARLVSGTVDQSEGMLSDDVVEQGYSLLCV 120
           VDADESIL SALD GL+IPHDCKLGVCMTCPARLVSG VDQSEGMLSDDVVE+GYSLLCV
Sbjct: 193 VDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVDQSEGMLSDDVVEKGYSLLCV 252

Query: 121 AYPRSDCHIKTIPEEELLALQLATAND 148
           AYPRSDCHI+TIPEEELLALQLATAND
Sbjct: 253 AYPRSDCHIQTIPEEELLALQLATAND 279

[Close]

BLAST of Clc05G06470 vs. NCBI nr
Match: XP_004134137.1 (ferredoxin C 1, chloroplastic [Cucumis sativus] >KGN56985.1 hypothetical protein Csa_010907 [Cucumis sativus])

HSP 1 Score: 270.4 bits (690), Expect = 9.2e-69
Identity = 137/147 (93.20%), Postives = 139/147 (94.56%), Query Frame = 0


Query: 1   MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQIGCSRRCLVVRSYKVVIEHEGKSTELE 60
           MATLHFVPSAFSLPKQKQP KLSSV   RPTTQI CSRR LVVRSYKVVIEHEG++TELE
Sbjct: 1   MATLHFVPSAFSLPKQKQPIKLSSV---RPTTQISCSRRRLVVRSYKVVIEHEGQTTELE 60

Query: 61  VDADESILSSALDNGLEIPHDCKLGVCMTCPARLVSGTVDQSEGMLSDDVVEQGYSLLCV 120
           VD DESILSSALDNGLEIPHDCKLGVCMTCPARLVSGTVDQSEGMLSDDVV QGYSLLCV
Sbjct: 61  VDPDESILSSALDNGLEIPHDCKLGVCMTCPARLVSGTVDQSEGMLSDDVVAQGYSLLCV 120

Query: 121 AYPRSDCHIKTIPEEELLALQLATAND 148
           AYPRSDCHIKTIPEEELLALQLATAND
Sbjct: 121 AYPRSDCHIKTIPEEELLALQLATAND 144

[Close]

BLAST of Clc05G06470 vs. ExPASy Swiss-Prot
Match: O23344 (Ferredoxin C 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FDC1 PE=1 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 4.3e-45
Identity = 92/146 (63.01%), Postives = 111/146 (76.03%), Query Frame = 0


Query: 9   SAFSLPKQKQPTKLSSVFKLRPTTQIGCSRR-------CLVVRSYKVVIEHEGKSTELEV 68
           S  SLPK       S  F LR  T    + R        ++ R+YKVV+EH+GK+TELEV
Sbjct: 11  STISLPKPYLSNSFS--FPLRNATLSTTTNRRNFLTTGRIIARAYKVVVEHDGKTTELEV 70

Query: 69  DADESILSSALDNGLEIPHDCKLGVCMTCPARLVSGTVDQSEGMLSDDVVEQGYSLLCVA 128
           + DE+ILS ALD+GL++P+DC LGVCMTCPA+LV+GTVDQS GMLSDDVVE+GY+LLC +
Sbjct: 71  EPDETILSKALDSGLDVPYDCNLGVCMTCPAKLVTGTVDQSGGMLSDDVVERGYTLLCAS 130

Query: 129 YPRSDCHIKTIPEEELLALQLATAND 148
           YP SDCHIK IPEEELL+LQLATAND
Sbjct: 131 YPTSDCHIKMIPEEELLSLQLATAND 154

[Close]

BLAST of Clc05G06470 vs. ExPASy Swiss-Prot
Match: P00252 (Ferredoxin-1 OS=Desmonostoc muscorum OX=1179 PE=1 SV=2)

HSP 1 Score: 99.0 bits (245), Expect = 4.8e-20
Identity = 48/94 (51.06%), Postives = 64/94 (68.09%), Query Frame = 0


Query: 46  YKV-VIEHEGKSTELEVDADESILSSALDNGLEIPHDCKLGVCMTCPARLVSGTVDQS-E 105
           YKV +++ EG  T ++V  DE IL  A D GL++P+ C+ G C TC  ++VSGTVDQS +
Sbjct: 5   YKVTLVDQEGTETTIDVPDDEYILDIAEDQGLDLPYSCRAGACSTCAGKIVSGTVDQSDQ 64

Query: 106 GMLSDDVVEQGYSLLCVAYPRSDCHIKTIPEEEL 138
             L DD +E+GY L CVAYP SD  I+T  EE+L
Sbjct: 65  SFLDDDQIEKGYVLTCVAYPTSDLKIETHKEEDL 98

[Close]

BLAST of Clc05G06470 vs. ExPASy Swiss-Prot
Match: P08451 (Ferredoxin-2 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=petF2 PE=3 SV=2)

HSP 1 Score: 99.0 bits (245), Expect = 4.8e-20
Identity = 47/98 (47.96%), Postives = 68/98 (69.39%), Query Frame = 0


Query: 45  SYKVVIEHEGKSTELEVDADESILSSALDNGLEIPHDCKLGVCMTCPARLVSGTVDQSEG 104
           +Y+V + ++G+S     D+D+S+L SA   G+++P  C  GVC TC AR++SG VDQ + 
Sbjct: 3   TYQVEVIYQGQSQTFTADSDQSVLDSAQAAGVDLPASCLTGVCTTCAARILSGEVDQPDA 62

Query: 105 M-LSDDVVEQGYSLLCVAYPRSDCHIKTIPEEELLALQ 142
           M +  +  +QGY+LLCVAYPRSD  I+T  E+EL ALQ
Sbjct: 63  MGVGPEPAKQGYTLLCVAYPRSDLKIETHKEDELYALQ 100

[Close]

BLAST of Clc05G06470 vs. ExPASy Swiss-Prot
Match: P00248 (Ferredoxin OS=Mastigocladus laminosus OX=83541 GN=petF PE=1 SV=2)

HSP 1 Score: 98.2 bits (243), Expect = 8.2e-20
Identity = 48/96 (50.00%), Postives = 65/96 (67.71%), Query Frame = 0


Query: 45  SYKVVI--EHEGKSTELEVDADESILSSALDNGLEIPHDCKLGVCMTCPARLVSGTVDQS 104
           +YKV +  E EG +  +EV  D+ IL +A + G+++P+ C+ G C TC  +L+SGTVDQS
Sbjct: 3   TYKVTLINEAEGLNKTIEVPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKLISGTVDQS 62

Query: 105 -EGMLSDDVVEQGYSLLCVAYPRSDCHIKTIPEEEL 138
            +  L DD +E GY L CVAYP SDC I+T  EEEL
Sbjct: 63  DQSFLDDDQIEAGYVLTCVAYPTSDCVIETHKEEEL 98

[Close]

BLAST of Clc05G06470 vs. ExPASy Swiss-Prot
Match: P00247 (Ferredoxin OS=Chlorogloeopsis fritschii OX=1124 PE=1 SV=2)

HSP 1 Score: 97.1 bits (240), Expect = 1.8e-19
Identity = 48/96 (50.00%), Postives = 64/96 (66.67%), Query Frame = 0


Query: 45  SYKVVI--EHEGKSTELEVDADESILSSALDNGLEIPHDCKLGVCMTCPARLVSGTVDQS 104
           +YKV +  + EG +  +EVD D  IL +A + GL++P+ C+ G C TC  ++ SGTVDQS
Sbjct: 3   TYKVTLINDAEGLNQTIEVDDDTYILDAAEEAGLDLPYSCRAGACSTCAGKIKSGTVDQS 62

Query: 105 -EGMLSDDVVEQGYSLLCVAYPRSDCHIKTIPEEEL 138
            +  L DD +E GY L CVAYP SDC I+T  EEEL
Sbjct: 63  DQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEEL 98

[Close]

BLAST of Clc05G06470 vs. ExPASy TrEMBL
Match: A0A6J1GY17 (Ferredoxin OS=Cucurbita moschata OX=3662 GN=LOC111457884 PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.1e-71
Identity = 136/147 (92.52%), Postives = 143/147 (97.28%), Query Frame = 0


Query: 1   MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQIGCSRRCLVVRSYKVVIEHEGKSTELE 60
           MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQ+GCS+R LVVRSYKVVIEHEG++TELE
Sbjct: 1   MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQLGCSQRRLVVRSYKVVIEHEGQTTELE 60

Query: 61  VDADESILSSALDNGLEIPHDCKLGVCMTCPARLVSGTVDQSEGMLSDDVVEQGYSLLCV 120
           VDADESIL SALD GL+IPHDCKLGVCMTCPARLVSG VDQSEGMLSDDVVE+GYSLLCV
Sbjct: 61  VDADESILDSALDKGLDIPHDCKLGVCMTCPARLVSGAVDQSEGMLSDDVVEKGYSLLCV 120

Query: 121 AYPRSDCHIKTIPEEELLALQLATAND 148
           AYPRSDCHI+TIPEEELLALQLATAND
Sbjct: 121 AYPRSDCHIQTIPEEELLALQLATAND 147

[Close]

BLAST of Clc05G06470 vs. ExPASy TrEMBL
Match: A0A6J1IWL8 (Ferredoxin OS=Cucurbita maxima OX=3661 GN=LOC111479154 PE=3 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 8.1e-71
Identity = 136/147 (92.52%), Postives = 143/147 (97.28%), Query Frame = 0


Query: 1   MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQIGCSRRCLVVRSYKVVIEHEGKSTELE 60
           MATLHFVPSAFSLPKQKQPTKLSSVFKLR TTQIGCS+R LVVRSYKVVIEHEG++TELE
Sbjct: 11  MATLHFVPSAFSLPKQKQPTKLSSVFKLRQTTQIGCSQRRLVVRSYKVVIEHEGQTTELE 70

Query: 61  VDADESILSSALDNGLEIPHDCKLGVCMTCPARLVSGTVDQSEGMLSDDVVEQGYSLLCV 120
           VDADESIL+SALD GL+IPHDCKLGVCMTCPARLVSG VDQSEGMLSDDVVE+GYSLLCV
Sbjct: 71  VDADESILNSALDKGLDIPHDCKLGVCMTCPARLVSGAVDQSEGMLSDDVVEKGYSLLCV 130

Query: 121 AYPRSDCHIKTIPEEELLALQLATAND 148
           AYPRSDCHI+TIPEEELLALQLATAND
Sbjct: 131 AYPRSDCHIQTIPEEELLALQLATAND 157

[Close]

BLAST of Clc05G06470 vs. ExPASy TrEMBL
Match: A0A0A0L4U6 (Ferredoxin OS=Cucumis sativus OX=3659 GN=Csa_3G146700 PE=3 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 4.4e-69
Identity = 137/147 (93.20%), Postives = 139/147 (94.56%), Query Frame = 0


Query: 1   MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQIGCSRRCLVVRSYKVVIEHEGKSTELE 60
           MATLHFVPSAFSLPKQKQP KLSSV   RPTTQI CSRR LVVRSYKVVIEHEG++TELE
Sbjct: 1   MATLHFVPSAFSLPKQKQPIKLSSV---RPTTQISCSRRRLVVRSYKVVIEHEGQTTELE 60

Query: 61  VDADESILSSALDNGLEIPHDCKLGVCMTCPARLVSGTVDQSEGMLSDDVVEQGYSLLCV 120
           VD DESILSSALDNGLEIPHDCKLGVCMTCPARLVSGTVDQSEGMLSDDVV QGYSLLCV
Sbjct: 61  VDPDESILSSALDNGLEIPHDCKLGVCMTCPARLVSGTVDQSEGMLSDDVVAQGYSLLCV 120

Query: 121 AYPRSDCHIKTIPEEELLALQLATAND 148
           AYPRSDCHIKTIPEEELLALQLATAND
Sbjct: 121 AYPRSDCHIKTIPEEELLALQLATAND 144

[Close]

BLAST of Clc05G06470 vs. ExPASy TrEMBL
Match: A0A5D3D1U0 (Ferredoxin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G00400 PE=3 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 7.6e-69
Identity = 136/147 (92.52%), Postives = 139/147 (94.56%), Query Frame = 0


Query: 1   MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQIGCSRRCLVVRSYKVVIEHEGKSTELE 60
           MATLHFVPSAFSLPKQKQP KLSSV   +PTT I CSRR LVVRSYKVVIEHEG++TELE
Sbjct: 1   MATLHFVPSAFSLPKQKQPIKLSSV---KPTTHISCSRRRLVVRSYKVVIEHEGQTTELE 60

Query: 61  VDADESILSSALDNGLEIPHDCKLGVCMTCPARLVSGTVDQSEGMLSDDVVEQGYSLLCV 120
           VD DESILSSALDNGLEIPHDCKLGVCMTCPARLVSGTVDQSEGMLSDDVVEQGYSLLCV
Sbjct: 61  VDPDESILSSALDNGLEIPHDCKLGVCMTCPARLVSGTVDQSEGMLSDDVVEQGYSLLCV 120

Query: 121 AYPRSDCHIKTIPEEELLALQLATAND 148
           AYPRSDCHIKTIPEEELLALQLATAND
Sbjct: 121 AYPRSDCHIKTIPEEELLALQLATAND 144

[Close]

BLAST of Clc05G06470 vs. ExPASy TrEMBL
Match: A0A1S3AX36 (Ferredoxin OS=Cucumis melo OX=3656 GN=LOC103483712 PE=3 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 7.6e-69
Identity = 136/147 (92.52%), Postives = 139/147 (94.56%), Query Frame = 0


Query: 1   MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQIGCSRRCLVVRSYKVVIEHEGKSTELE 60
           MATLHFVPSAFSLPKQKQP KLSSV   +PTT I CSRR LVVRSYKVVIEHEG++TELE
Sbjct: 36  MATLHFVPSAFSLPKQKQPIKLSSV---KPTTHISCSRRRLVVRSYKVVIEHEGQTTELE 95

Query: 61  VDADESILSSALDNGLEIPHDCKLGVCMTCPARLVSGTVDQSEGMLSDDVVEQGYSLLCV 120
           VD DESILSSALDNGLEIPHDCKLGVCMTCPARLVSGTVDQSEGMLSDDVVEQGYSLLCV
Sbjct: 96  VDPDESILSSALDNGLEIPHDCKLGVCMTCPARLVSGTVDQSEGMLSDDVVEQGYSLLCV 155

Query: 121 AYPRSDCHIKTIPEEELLALQLATAND 148
           AYPRSDCHIKTIPEEELLALQLATAND
Sbjct: 156 AYPRSDCHIKTIPEEELLALQLATAND 179

[Close]

BLAST of Clc05G06470 vs. TAIR 10
Match: AT4G14890.1 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 182.2 bits (461), Expect = 3.1e-46
Identity = 92/146 (63.01%), Postives = 111/146 (76.03%), Query Frame = 0


Query: 9   SAFSLPKQKQPTKLSSVFKLRPTTQIGCSRR-------CLVVRSYKVVIEHEGKSTELEV 68
           S  SLPK       S  F LR  T    + R        ++ R+YKVV+EH+GK+TELEV
Sbjct: 11  STISLPKPYLSNSFS--FPLRNATLSTTTNRRNFLTTGRIIARAYKVVVEHDGKTTELEV 70

Query: 69  DADESILSSALDNGLEIPHDCKLGVCMTCPARLVSGTVDQSEGMLSDDVVEQGYSLLCVA 128
           + DE+ILS ALD+GL++P+DC LGVCMTCPA+LV+GTVDQS GMLSDDVVE+GY+LLC +
Sbjct: 71  EPDETILSKALDSGLDVPYDCNLGVCMTCPAKLVTGTVDQSGGMLSDDVVERGYTLLCAS 130

Query: 129 YPRSDCHIKTIPEEELLALQLATAND 148
           YP SDCHIK IPEEELL+LQLATAND
Sbjct: 131 YPTSDCHIKMIPEEELLSLQLATAND 154

[Close]

BLAST of Clc05G06470 vs. TAIR 10
Match: AT2G27510.1 (ferredoxin 3 )

HSP 1 Score: 91.7 bits (226), Expect = 5.4e-19
Identity = 45/94 (47.87%), Postives = 63/94 (67.02%), Query Frame = 0


Query: 46  YKV-VIEHEGKSTELEVDADESILSSALDNGLEIPHDCKLGVCMTCPARLVSGTVDQSEG 105
           YKV ++  +G+  E EV  D+ IL +A + G+++P+ C+ G C TC  ++VSG VDQS+G
Sbjct: 61  YKVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDG 120

Query: 106 -MLSDDVVEQGYSLLCVAYPRSDCHIKTIPEEEL 138
             L D  +E+GY L CVAYP+SDC I T  E EL
Sbjct: 121 SFLEDSHLEKGYVLTCVAYPQSDCVIHTHKETEL 154

[Close]

BLAST of Clc05G06470 vs. TAIR 10
Match: AT1G10960.1 (ferredoxin 1 )

HSP 1 Score: 82.4 bits (202), Expect = 3.3e-16
Identity = 51/142 (35.92%), Postives = 81/142 (57.04%), Query Frame = 0


Query: 7   VPSAFSLPKQKQPTKL--------SSVFKLRPTTQIGCSRRCLVVRSYKV-VIEHEGKST 66
           + S   L +Q+ P  L         S+F L+ +T  G   R   + +YKV  I  EG+  
Sbjct: 10  IVSTSFLRRQQTPISLRSLPFANTQSLFGLKSSTARG--GRVTAMATYKVKFITPEGEQ- 69

Query: 67  ELEVDADESILSSALDNGLEIPHDCKLGVCMTCPARLVSGTVDQS-EGMLSDDVVEQGYS 126
           E+E + D  +L +A + GL++P+ C+ G C +C  ++VSG++DQS +  L D+ + +GY 
Sbjct: 70  EVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSEGYV 129

Query: 127 LLCVAYPRSDCHIKTIPEEELL 139
           L CVAYP SD  I+T  EE ++
Sbjct: 130 LTCVAYPTSDVVIETHKEEAIM 148

[Close]

BLAST of Clc05G06470 vs. TAIR 10
Match: AT5G10000.1 (ferredoxin 4 )

HSP 1 Score: 82.4 bits (202), Expect = 3.3e-16
Identity = 48/128 (37.50%), Postives = 71/128 (55.47%), Query Frame = 0


Query: 19  PTKLSSVFKLRPTTQIGCSR------RCLVVRSYKV-VIEHEGKSTELEVDADESILSSA 78
           P++     +L  TT  G S       +     S KV +I  EG+  E+E + D  IL SA
Sbjct: 21  PSQAQLTTRLNNTTYFGLSSSRGNFGKVFAKESRKVKLISPEGEEQEIEGNEDCCILESA 80

Query: 79  LDNGLEIPHDCKLGVCMTCPARLVSGTVDQSEG-MLSDDVVEQGYSLLCVAYPRSDCHIK 138
            + GLE+P+ C+ G C TC  +LVSG VDQS G  L ++ +++GY L C+A P  DC + 
Sbjct: 81  ENAGLELPYSCRSGTCGTCCGKLVSGKVDQSLGSFLEEEQIQKGYILTCIALPLEDCVVY 140

[Close]

BLAST of Clc05G06470 vs. TAIR 10
Match: AT1G60950.1 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 80.1 bits (196), Expect = 1.6e-15
Identity = 42/116 (36.21%), Postives = 68/116 (58.62%), Query Frame = 0


Query: 24  SVFKLRPTTQIGCSRRCLVVRSYKVVIEHEGKSTELEVDADESILSSALDNGLEIPHDCK 83
           S+F L+  T  G   R   + +YKV         E+E D D  +L +A + G+++P+ C+
Sbjct: 35  SLFGLKSGTARG--GRVTAMATYKVKFITPEGELEVECDDDVYVLDAAEEAGIDLPYSCR 94

Query: 84  LGVCMTCPARLVSGTVDQS-EGMLSDDVVEQGYSLLCVAYPRSDCHIKTIPEEELL 139
            G C +C  ++VSG+VDQS +  L D+ + +G+ L C AYP SD  I+T  EE+++
Sbjct: 95  AGSCSSCAGKVVSGSVDQSDQSFLDDEQIGEGFVLTCAAYPTSDVTIETHKEEDIV 148

The following BLAST results are available for this feature:

BLAST of Clc05G06470 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023526556.1	2.6e-71	93.20	uncharacterized protein LOC111790026 [Cucurbita pepo subsp. pepo]	[more]
XP_022956084.1	4.4e-71	92.52	uncharacterized protein LOC111457884 [Cucurbita moschata] >KAG7018707.1 petF2, p...	[more]
XP_022979429.1	1.7e-70	92.52	uncharacterized protein LOC111479154 [Cucurbita maxima]	[more]
KAG6582296.1	2.2e-70	92.52	Ferredoxin C 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_004134137.1	9.2e-69	93.20	ferredoxin C 1, chloroplastic [Cucumis sativus] >KGN56985.1 hypothetical protein...	[more]

BLAST of Clc05G06470 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O23344	4.3e-45	63.01	Ferredoxin C 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FDC1 PE=1 SV=1	[more]
P00252	4.8e-20	51.06	Ferredoxin-1 OS=Desmonostoc muscorum OX=1179 PE=1 SV=2	[more]
P08451	4.8e-20	47.96	Ferredoxin-2 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) O...	[more]
P00248	8.2e-20	50.00	Ferredoxin OS=Mastigocladus laminosus OX=83541 GN=petF PE=1 SV=2	[more]
P00247	1.8e-19	50.00	Ferredoxin OS=Chlorogloeopsis fritschii OX=1124 PE=1 SV=2	[more]

BLAST of Clc05G06470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GY17	2.1e-71	92.52	Ferredoxin OS=Cucurbita moschata OX=3662 GN=LOC111457884 PE=3 SV=1	[more]
A0A6J1IWL8	8.1e-71	92.52	Ferredoxin OS=Cucurbita maxima OX=3661 GN=LOC111479154 PE=3 SV=1	[more]
A0A0A0L4U6	4.4e-69	93.20	Ferredoxin OS=Cucumis sativus OX=3659 GN=Csa_3G146700 PE=3 SV=1	[more]
A0A5D3D1U0	7.6e-69	92.52	Ferredoxin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G00400 PE=...	[more]
A0A1S3AX36	7.6e-69	92.52	Ferredoxin OS=Cucumis melo OX=3656 GN=LOC103483712 PE=3 SV=1	[more]

BLAST of Clc05G06470 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G14890.1	3.1e-46	63.01	2Fe-2S ferredoxin-like superfamily protein	[more]
AT2G27510.1	5.4e-19	47.87	ferredoxin 3	[more]
AT1G10960.1	3.3e-16	35.92	ferredoxin 1	[more]
AT5G10000.1	3.3e-16	37.50	ferredoxin 4	[more]
AT1G60950.1	1.6e-15	36.21	2Fe-2S ferredoxin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012675	Beta-grasp domain superfamily	GENE3D	3.10.20.30		coord: 43..145 e-value: 2.1E-27 score: 96.8
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PFAM	PF00111	Fer2	coord: 51..123 e-value: 6.6E-14 score: 51.6
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PROSITE	PS51085	2FE2S_FER_2	coord: 46..135 score: 12.166751
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	CDD	cd00207	fer2	coord: 48..130 e-value: 3.29119E-22 score: 82.4428
IPR010241	Ferredoxin [2Fe-2S], plant	TIGRFAM	TIGR02008	TIGR02008	coord: 45..137 e-value: 1.2E-26 score: 90.3
None	No IPR available	PANTHER	PTHR43112	FERREDOXIN	coord: 1..142
None	No IPR available	PANTHER	PTHR43112:SF9	FERREDOXIN C 1, CHLOROPLASTIC	coord: 1..142
IPR036010	2Fe-2S ferredoxin-like superfamily	SUPERFAMILY	54292	2Fe-2S ferredoxin-like	coord: 44..141

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc05G06470.1	Clc05G06470.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0051536	iron-sulfur cluster binding