Clc05G06130 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc05G06130
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Epidermal patterning factor-like protein
Location	ClcChr05: 4502762 .. 4503663 (+)
RNA-Seq Expression	Clc05G06130
Synteny	Clc05G06130

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCCTCTCTCTCTCTCTCTCTCTCTTACAACCTTTTTGAGCTCTATGTCTTTGACTTCAAATCCTCTCTAAATACACCCAAGTGTTTTTTTCCCTTCTTTTATTTTAAAACGATAAGAAAAAAAAAATAAAATAAAAAAAATGAGCATGCAGTGGCAGAATCAGAAGCAGAAGCAGATGAGCAGCTTCAACAAAAATTTTCCTTCTGCAGCCTCTTTAACCCTCCCCCTTTACTCTATAACTCAATAATCTCACGCACTGCCGTCTATTTCTGAATGGGATCACTTCCCCCTCTCCATCCATCCAATTATTATTACCATTTCTCTCTTCTTCTCGTTCTCTTCGCTTTCGCCGCTTTACTCTCCGCCTCTCCAGGTAAATTTACTATTATTAACCCATCACCTTAAATTTTTTTTTTTTTCAAAAAACTAAAAAATTGAAAAATGAACTAAATTATACACTAACGTGTCAGACAGCGGAGGGTGGGTTGGGGATAAGAAGATCTTGGTTGGACCAGGATCGTCGCCGCCGACGTGTCGATTTAAGTGTGGGAAATGCTGGCCCTGTGAACCGGTTCATGTTCCAATTCAACCGGGTTTGAGTGTGCCATTGGAGTATTACCCTGAAGCTTGGAGATGCAAGTGTGGGAATAAGTTGTTCATGCCTTGAGAGTTGAGACAGTTTCTACATCAAATAATAGTAATTAATTTTCTCTTTTTGGGTTTTTAAGGAAAAAAAAATTTAATTAAATTAATGTTGTGTTTGTGTGTGTATATACATAGATTGATCTGCTTGGTTATGATTGGTGGATATGGTTGAAGCTGGGCAGAGGTATTTTAAGAAGATTAATTAATTTAATGTATCCTTAAATATAACATTAATTAAAACCTTATTTCTTTTTGT

mRNA sequence

CTCCTCTCTCTCTCTCTCTCTCTCTTACAACCTTTTTGAGCTCTATGTCTTTGACTTCAAATCCTCTCTAAATACACCCAAGTGTTTTTTTCCCTTCTTTTATTTTAAAACGATAAGAAAAAAAAAATAAAATAAAAAAAATGAGCATGCAGTGGCAGAATCAGAAGCAGAAGCAGATGAGCAGCTTCAACAAAAATTTTCCTTCTGCAGCCTCTTTAACCCTCCCCCTTTACTCTATAACTCAATAATCTCACGCACTGCCGTCTATTTCTGAATGGGATCACTTCCCCCTCTCCATCCATCCAATTATTATTACCATTTCTCTCTTCTTCTCGTTCTCTTCGCTTTCGCCGCTTTACTCTCCGCCTCTCCAGACAGCGGAGGGTGGGTTGGGGATAAGAAGATCTTGGTTGGACCAGGATCGTCGCCGCCGACGTGTCGATTTAAGTGTGGGAAATGCTGGCCCTGTGAACCGGTTCATGTTCCAATTCAACCGGGTTTGAGTGTGCCATTGGAGTATTACCCTGAAGCTTGGAGATGCAAGTGTGGGAATAAGTTGTTCATGCCTTGAGAGTTGAGACAGTTTCTACATCAAATAATAGTAATTAATTTTCTCTTTTTGGGTTTTTAAGGAAAAAAAAATTTAATTAAATTAATGTTGTGTTTGTGTGTGTATATACATAGATTGATCTGCTTGGTTATGATTGGTGGATATGGTTGAAGCTGGGCAGAGGTATTTTAAGAAGATTAATTAATTTAATGTATCCTTAAATATAACATTAATTAAAACCTTATTTCTTTTTGT

Coding sequence (CDS)

ATGGGATCACTTCCCCCTCTCCATCCATCCAATTATTATTACCATTTCTCTCTTCTTCTCGTTCTCTTCGCTTTCGCCGCTTTACTCTCCGCCTCTCCAGACAGCGGAGGGTGGGTTGGGGATAAGAAGATCTTGGTTGGACCAGGATCGTCGCCGCCGACGTGTCGATTTAAGTGTGGGAAATGCTGGCCCTGTGAACCGGTTCATGTTCCAATTCAACCGGGTTTGAGTGTGCCATTGGAGTATTACCCTGAAGCTTGGAGATGCAAGTGTGGGAATAAGTTGTTCATGCCTTGA

Protein sequence

MGSLPPLHPSNYYYHFSLLLVLFAFAALLSASPDSGGWVGDKKILVGPGSSPPTCRFKCGKCWPCEPVHVPIQPGLSVPLEYYPEAWRCKCGNKLFMP

Homology

[Close]

BLAST of Clc05G06130 vs. NCBI nr
Match: XP_038905188.1 (EPIDERMAL PATTERNING FACTOR-like protein 4 [Benincasa hispida])

HSP 1 Score: 175.3 bits (443), Expect = 2.7e-40
Identity = 77/94 (81.91%), Postives = 83/94 (88.30%), Query Frame = 0


Query: 9  PSNYYYHFSLLLVLF----AFAALLSASPDSGGWVGDKKILVGPGSSPPTCRFKCGKCWP 68
          PSNYYYHFSLLL+LF     F  L+SASP+SGGW+GD+K LVGPGS PPTCR KCG+C P
Sbjct: 4  PSNYYYHFSLLLILFLLTALFPRLVSASPESGGWIGDRKSLVGPGSCPPTCRAKCGRCRP 63

Query: 69 CEPVHVPIQPGLSVPLEYYPEAWRCKCGNKLFMP 99
          CEPVHVPIQPGLSVPLEYYPEAWRCKCGNKLFMP
Sbjct: 64 CEPVHVPIQPGLSVPLEYYPEAWRCKCGNKLFMP 97

[Close]

BLAST of Clc05G06130 vs. NCBI nr
Match: KGN56945.1 (hypothetical protein Csa_009821 [Cucumis sativus])

HSP 1 Score: 155.2 bits (391), Expect = 2.9e-34
Identity = 75/107 (70.09%), Postives = 86/107 (80.37%), Query Frame = 0


Query: 1   MGS--LPPLHPSNYYYHFSLL-LVLFAF------AALLSASPDSGGWVGDKKILVGPGSS 60
           MGS  LP  HPS  ++HFSLL L LFAF      ++  S+S ++GGW+GD+K LVGPGSS
Sbjct: 1   MGSSFLPSPHPS--HFHFSLLILTLFAFQLASASSSSSSSSSETGGWIGDRKSLVGPGSS 60

Query: 61  PPTCRFKCGKCWPCEPVHVPIQPGLSVPLEYYPEAWRCKCGNKLFMP 99
           PPTC  KCG+C PCEPVHVPIQPGLS+PLEYYPEAWRCKCGNKLFMP
Sbjct: 61  PPTCLAKCGRCGPCEPVHVPIQPGLSLPLEYYPEAWRCKCGNKLFMP 105

[Close]

BLAST of Clc05G06130 vs. NCBI nr
Match: XP_008438622.1 (PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 4 [Cucumis melo])

HSP 1 Score: 153.7 bits (387), Expect = 8.3e-34
Identity = 75/113 (66.37%), Postives = 86/113 (76.11%), Query Frame = 0


Query: 1   MGS--LPPLHPSNYYYHFSLL-LVLFAF------------AALLSASPDSGGWVGDKKIL 60
           MGS  LP  HPS  ++HFSLL L LFAF            ++  S+S ++GGW+GD+K L
Sbjct: 1   MGSSFLPSPHPS--HFHFSLLILTLFAFQLASASSSSSSSSSSFSSSSETGGWIGDRKSL 60

Query: 61  VGPGSSPPTCRFKCGKCWPCEPVHVPIQPGLSVPLEYYPEAWRCKCGNKLFMP 99
           VGPGSSPPTC  KCG+C PCEPVHVPIQPGLS+PLEYYPEAWRCKCGNKLFMP
Sbjct: 61  VGPGSSPPTCLAKCGRCGPCEPVHVPIQPGLSLPLEYYPEAWRCKCGNKLFMP 111

[Close]

BLAST of Clc05G06130 vs. NCBI nr
Match: KAG6597420.1 (EPIDERMAL PATTERNING FACTOR-like protein 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 132.1 bits (331), Expect = 2.6e-27
Identity = 61/95 (64.21%), Postives = 74/95 (77.89%), Query Frame = 0


Query: 8  HPSNYYYHFSLLL-VLFAFAAL---LSASPDSGGWVGDKKILVGPGSSPPTCRFKCGKCW 67
          H  + + +FSLLL +L AFAA+    +A+     W+G     +GPGSSPPTCR +CG+CW
Sbjct: 5  HRHSNHCNFSLLLTLLLAFAAVFFHFAAAETQRWWLGTP---LGPGSSPPTCRSRCGRCW 64

Query: 68 PCEPVHVPIQPGLSVPLEYYPEAWRCKCGNKLFMP 99
          PC+PVHVPIQPG+SVPLEYYPEAWRCKCGNKLFMP
Sbjct: 65 PCQPVHVPIQPGMSVPLEYYPEAWRCKCGNKLFMP 96

[Close]

BLAST of Clc05G06130 vs. NCBI nr
Match: KAG7615994.1 (hypothetical protein ISN45_At04g015230 [Arabidopsis thaliana x Arabidopsis arenosa] >KAG7620481.1 hypothetical protein ISN44_As04g014810 [Arabidopsis suecica] >OAO99753.1 EPFL4 [Arabidopsis thaliana] >CAA0395255.1 unnamed protein product [Arabidopsis thaliana] >CAD5327928.1 unnamed protein product [Arabidopsis thaliana])

HSP 1 Score: 127.9 bits (320), Expect = 4.9e-26
Identity = 59/90 (65.56%), Postives = 68/90 (75.56%), Query Frame = 0


Query: 19  LLVLFAFAALLSA----------SPDSGGWVGDKKILVGPGSSPPTCRFKCGKCWPCEPV 78
           LL LF+ ++++SA          S   GG++G  K   GPGSSPPTCR KCGKC PC+PV
Sbjct: 20  LLHLFSASSIVSADGRWIGQRTGSDLPGGFMGSNKRFGGPGSSPPTCRSKCGKCQPCKPV 79

Query: 79  HVPIQPGLSVPLEYYPEAWRCKCGNKLFMP 99
           HVPIQPGLS+PLEYYPEAWRCKCGNKLFMP
Sbjct: 80  HVPIQPGLSMPLEYYPEAWRCKCGNKLFMP 109

[Close]

BLAST of Clc05G06130 vs. ExPASy Swiss-Prot
Match: Q2V3I3 (EPIDERMAL PATTERNING FACTOR-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=EPFL4 PE=1 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 3.2e-28
Identity = 58/90 (64.44%), Postives = 67/90 (74.44%), Query Frame = 0


Query: 19  LLVLFAFAALLSA----------SPDSGGWVGDKKILVGPGSSPPTCRFKCGKCWPCEPV 78
           LL LF+ ++++SA          S   GG++   K   GPGSSPPTCR KCGKC PC+PV
Sbjct: 20  LLHLFSASSIVSADGRWIGQRTGSDLPGGFIRSNKRFGGPGSSPPTCRSKCGKCQPCKPV 79

Query: 79  HVPIQPGLSVPLEYYPEAWRCKCGNKLFMP 99
           HVPIQPGLS+PLEYYPEAWRCKCGNKLFMP
Sbjct: 80  HVPIQPGLSMPLEYYPEAWRCKCGNKLFMP 109

[Close]

BLAST of Clc05G06130 vs. ExPASy Swiss-Prot
Match: Q9LUH9 (EPIDERMAL PATTERNING FACTOR-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=EPFL5 PE=1 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 4.3e-25
Identity = 48/62 (77.42%), Postives = 52/62 (83.87%), Query Frame = 0


Query: 37  GWVGDKKILVGPGSSPPTCRFKCGKCWPCEPVHVPIQPGLSVPLEYYPEAWRCKCGNKLF 96
           G + D+K L GPGS PP CR KCGKC PC+ VHVPIQPGL +PLEYYPEAWRCKCGNKLF
Sbjct: 46  GQIVDQKRLGGPGSVPPMCRLKCGKCEPCKAVHVPIQPGLIMPLEYYPEAWRCKCGNKLF 105

Query: 97  MP 99
           MP
Sbjct: 106 MP 107

[Close]

BLAST of Clc05G06130 vs. ExPASy Swiss-Prot
Match: Q1PEY6 (EPIDERMAL PATTERNING FACTOR-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=EPFL6 PE=1 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 4.9e-21
Identity = 40/57 (70.18%), Postives = 46/57 (80.70%), Query Frame = 0


Query: 42  KKILVGPGSSPPTCRFKCGKCWPCEPVHVPIQPGLSVPLEYYPEAWRCKCGNKLFMP 99
           ++IL G GSSPP C  KCG+C PC+PVHVP+ PG  V  EYYPEAWRCKCGNKL+MP
Sbjct: 100 RRILRGLGSSPPRCSSKCGRCTPCKPVHVPVPPGTPVTAEYYPEAWRCKCGNKLYMP 156

[Close]

BLAST of Clc05G06130 vs. ExPASy Swiss-Prot
Match: Q9FY19 (Polygalacturonase OS=Juniperus ashei OX=13101 GN=JNA2 PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 9.6e-09
Identity = 24/58 (41.38%), Postives = 35/58 (60.34%), Query Frame = 0


Query: 41  DKKILVGPGSSPPTCRFKCGKCWPCEPVHVPIQPGLSVPLEYYPEAWRCKCGNKLFMP 99
           D+K+     SSPP C+ KC  C PC+P  + + P  + P +YYP+ W C C NK++ P
Sbjct: 452 DEKMGASLNSSPPNCKNKCKGCQPCKPKLIIVHP--NQPEDYYPQRWVCSCHNKIYNP 507

[Close]

BLAST of Clc05G06130 vs. ExPASy Swiss-Prot
Match: Q7M1E7 (Polygalacturonase OS=Chamaecyparis obtusa OX=13415 PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.8e-08
Identity = 22/49 (44.90%), Postives = 31/49 (63.27%), Query Frame = 0


Query: 50  SSPPTCRFKCGKCWPCEPVHVPIQPGLSVPLEYYPEAWRCKCGNKLFMP 99
           SSPP C+ KC  C PC+P  + + P  + P +YYP+ W C C NK++ P
Sbjct: 468 SSPPNCKNKCKGCQPCKPKLIIVHP--NKPQDYYPQKWVCSCHNKIYNP 514

[Close]

BLAST of Clc05G06130 vs. ExPASy TrEMBL
Match: A0A0A0L4P0 (Epidermal patterning factor-like protein OS=Cucumis sativus OX=3659 GN=Csa_3G146310 PE=3 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.4e-34
Identity = 75/107 (70.09%), Postives = 86/107 (80.37%), Query Frame = 0


Query: 1   MGS--LPPLHPSNYYYHFSLL-LVLFAF------AALLSASPDSGGWVGDKKILVGPGSS 60
           MGS  LP  HPS  ++HFSLL L LFAF      ++  S+S ++GGW+GD+K LVGPGSS
Sbjct: 1   MGSSFLPSPHPS--HFHFSLLILTLFAFQLASASSSSSSSSSETGGWIGDRKSLVGPGSS 60

Query: 61  PPTCRFKCGKCWPCEPVHVPIQPGLSVPLEYYPEAWRCKCGNKLFMP 99
           PPTC  KCG+C PCEPVHVPIQPGLS+PLEYYPEAWRCKCGNKLFMP
Sbjct: 61  PPTCLAKCGRCGPCEPVHVPIQPGLSLPLEYYPEAWRCKCGNKLFMP 105

[Close]

BLAST of Clc05G06130 vs. ExPASy TrEMBL
Match: A0A1S3AWH2 (Epidermal patterning factor-like protein OS=Cucumis melo OX=3656 GN=LOC103483678 PE=3 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 4.0e-34
Identity = 75/113 (66.37%), Postives = 86/113 (76.11%), Query Frame = 0


Query: 1   MGS--LPPLHPSNYYYHFSLL-LVLFAF------------AALLSASPDSGGWVGDKKIL 60
           MGS  LP  HPS  ++HFSLL L LFAF            ++  S+S ++GGW+GD+K L
Sbjct: 1   MGSSFLPSPHPS--HFHFSLLILTLFAFQLASASSSSSSSSSSFSSSSETGGWIGDRKSL 60

Query: 61  VGPGSSPPTCRFKCGKCWPCEPVHVPIQPGLSVPLEYYPEAWRCKCGNKLFMP 99
           VGPGSSPPTC  KCG+C PCEPVHVPIQPGLS+PLEYYPEAWRCKCGNKLFMP
Sbjct: 61  VGPGSSPPTCLAKCGRCGPCEPVHVPIQPGLSLPLEYYPEAWRCKCGNKLFMP 111

[Close]

BLAST of Clc05G06130 vs. ExPASy TrEMBL
Match: A0A178V213 (Epidermal patterning factor-like protein OS=Arabidopsis thaliana OX=3702 GN=AXX17_At4g17010 PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.4e-26
Identity = 59/90 (65.56%), Postives = 68/90 (75.56%), Query Frame = 0


Query: 19  LLVLFAFAALLSA----------SPDSGGWVGDKKILVGPGSSPPTCRFKCGKCWPCEPV 78
           LL LF+ ++++SA          S   GG++G  K   GPGSSPPTCR KCGKC PC+PV
Sbjct: 20  LLHLFSASSIVSADGRWIGQRTGSDLPGGFMGSNKRFGGPGSSPPTCRSKCGKCQPCKPV 79

Query: 79  HVPIQPGLSVPLEYYPEAWRCKCGNKLFMP 99
           HVPIQPGLS+PLEYYPEAWRCKCGNKLFMP
Sbjct: 80  HVPIQPGLSMPLEYYPEAWRCKCGNKLFMP 109

[Close]

BLAST of Clc05G06130 vs. ExPASy TrEMBL
Match: A0A6D2KFV2 (Epidermal patterning factor-like protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS40611 PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 5.3e-26
Identity = 60/94 (63.83%), Postives = 68/94 (72.34%), Query Frame = 0


Query: 20  LVLFAFAALLSASP--DSGGWVG-------------DKKILVGPGSSPPTCRFKCGKCWP 79
           L  FAF  L+SA+    +GGW+G             DK+   GPGSSPPTCR KCGKC P
Sbjct: 16  LAAFAFLHLVSAASVVSTGGWLGQRTRSDIPGRFMADKRF--GPGSSPPTCRSKCGKCQP 75

Query: 80  CEPVHVPIQPGLSVPLEYYPEAWRCKCGNKLFMP 99
           C+PVHVPIQPG+S+PLEYYPEAWRCKCGNKLFMP
Sbjct: 76  CKPVHVPIQPGMSMPLEYYPEAWRCKCGNKLFMP 107

[Close]

BLAST of Clc05G06130 vs. ExPASy TrEMBL
Match: V4P8Z8 (Epidermal patterning factor-like protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10026630mg PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 5.3e-26
Identity = 59/92 (64.13%), Postives = 65/92 (70.65%), Query Frame = 0


Query: 20  LVLFAFAALLSASPDS-GGWVGDK------------KILVGPGSSPPTCRFKCGKCWPCE 79
           +  FA   L SAS  S GGW+G +            +   GPGSSPPTCR KCGKC PC+
Sbjct: 16  IAAFALLHLFSASAASAGGWLGQRTGSDLPDRLMSNRRFGGPGSSPPTCRSKCGKCQPCK 75

Query: 80  PVHVPIQPGLSVPLEYYPEAWRCKCGNKLFMP 99
           PVHVPIQPGLS+PLEYYPEAWRCKCGNKLFMP
Sbjct: 76  PVHVPIQPGLSIPLEYYPEAWRCKCGNKLFMP 107

[Close]

BLAST of Clc05G06130 vs. TAIR 10
Match: AT4G14723.1 (BEST Arabidopsis thaliana protein match is: allergen-related (TAIR:AT3G22820.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 125.6 bits (314), Expect = 2.3e-29
Identity = 58/90 (64.44%), Postives = 67/90 (74.44%), Query Frame = 0


Query: 19  LLVLFAFAALLSA----------SPDSGGWVGDKKILVGPGSSPPTCRFKCGKCWPCEPV 78
           LL LF+ ++++SA          S   GG++   K   GPGSSPPTCR KCGKC PC+PV
Sbjct: 20  LLHLFSASSIVSADGRWIGQRTGSDLPGGFIRSNKRFGGPGSSPPTCRSKCGKCQPCKPV 79

Query: 79  HVPIQPGLSVPLEYYPEAWRCKCGNKLFMP 99
           HVPIQPGLS+PLEYYPEAWRCKCGNKLFMP
Sbjct: 80  HVPIQPGLSMPLEYYPEAWRCKCGNKLFMP 109

[Close]

BLAST of Clc05G06130 vs. TAIR 10
Match: AT3G22820.1 (allergen-related )

HSP 1 Score: 115.2 bits (287), Expect = 3.1e-26
Identity = 48/62 (77.42%), Postives = 52/62 (83.87%), Query Frame = 0


Query: 37  GWVGDKKILVGPGSSPPTCRFKCGKCWPCEPVHVPIQPGLSVPLEYYPEAWRCKCGNKLF 96
           G + D+K L GPGS PP CR KCGKC PC+ VHVPIQPGL +PLEYYPEAWRCKCGNKLF
Sbjct: 46  GQIVDQKRLGGPGSVPPMCRLKCGKCEPCKAVHVPIQPGLIMPLEYYPEAWRCKCGNKLF 105

Query: 97  MP 99
           MP
Sbjct: 106 MP 107

[Close]

BLAST of Clc05G06130 vs. TAIR 10
Match: AT2G30370.1 (allergen-related )

HSP 1 Score: 101.7 bits (252), Expect = 3.5e-22
Identity = 40/57 (70.18%), Postives = 46/57 (80.70%), Query Frame = 0


Query: 42  KKILVGPGSSPPTCRFKCGKCWPCEPVHVPIQPGLSVPLEYYPEAWRCKCGNKLFMP 99
           ++IL G GSSPP C  KCG+C PC+PVHVP+ PG  V  EYYPEAWRCKCGNKL+MP
Sbjct: 174 RRILRGLGSSPPRCSSKCGRCTPCKPVHVPVPPGTPVTAEYYPEAWRCKCGNKLYMP 230

[Close]

BLAST of Clc05G06130 vs. TAIR 10
Match: AT2G30370.2 (allergen-related )

HSP 1 Score: 101.7 bits (252), Expect = 3.5e-22
Identity = 40/57 (70.18%), Postives = 46/57 (80.70%), Query Frame = 0


Query: 42  KKILVGPGSSPPTCRFKCGKCWPCEPVHVPIQPGLSVPLEYYPEAWRCKCGNKLFMP 99
           ++IL G GSSPP C  KCG+C PC+PVHVP+ PG  V  EYYPEAWRCKCGNKL+MP
Sbjct: 100 RRILRGLGSSPPRCSSKCGRCTPCKPVHVPVPPGTPVTAEYYPEAWRCKCGNKLYMP 156

[Close]

BLAST of Clc05G06130 vs. TAIR 10
Match: AT1G80133.1 (unknown protein; LOCATED IN: endomembrane system; Has 154 Blast hits to 154 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 154; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.4 bits (106), Expect = 3.0e-05
Identity = 30/86 (34.88%), Postives = 39/86 (45.35%), Query Frame = 0


Query: 19 LLVLFAFAALLSASPDSGGWVGDKKILVG-PGSSPPTCRFKCGKCWPCEPVHVPIQPGL- 78
          L V   F +LLS    SG     +++     GS PP C  KC  C PC P    I+    
Sbjct: 16 LFVANIFFSLLSLHCISGAHGHQQRMKESVMGSEPPVCATKCRNCKPCLPYLFDIRGAHD 75

Query: 79 ----SVPLEYYPEAWRCKCGNKLFMP 99
              S P  YYP  W C+C +++F P
Sbjct: 76 DDDDSEP--YYPVKWICRCRDRVFEP 99

The following BLAST results are available for this feature:

BLAST of Clc05G06130 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905188.1	2.7e-40	81.91	EPIDERMAL PATTERNING FACTOR-like protein 4 [Benincasa hispida]	[more]
KGN56945.1	2.9e-34	70.09	hypothetical protein Csa_009821 [Cucumis sativus]	[more]
XP_008438622.1	8.3e-34	66.37	PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 4 [Cucumis melo]	[more]
KAG6597420.1	2.6e-27	64.21	EPIDERMAL PATTERNING FACTOR-like protein 4, partial [Cucurbita argyrosperma subs...	[more]
KAG7615994.1	4.9e-26	65.56	hypothetical protein ISN45_At04g015230 [Arabidopsis thaliana x Arabidopsis areno...	[more]

BLAST of Clc05G06130 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2V3I3	3.2e-28	64.44	EPIDERMAL PATTERNING FACTOR-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]
Q9LUH9	4.3e-25	77.42	EPIDERMAL PATTERNING FACTOR-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]
Q1PEY6	4.9e-21	70.18	EPIDERMAL PATTERNING FACTOR-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]
Q9FY19	9.6e-09	41.38	Polygalacturonase OS=Juniperus ashei OX=13101 GN=JNA2 PE=1 SV=1	[more]
Q7M1E7	4.8e-08	44.90	Polygalacturonase OS=Chamaecyparis obtusa OX=13415 PE=1 SV=1	[more]

BLAST of Clc05G06130 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4P0	1.4e-34	70.09	Epidermal patterning factor-like protein OS=Cucumis sativus OX=3659 GN=Csa_3G146...	[more]
A0A1S3AWH2	4.0e-34	66.37	Epidermal patterning factor-like protein OS=Cucumis melo OX=3656 GN=LOC103483678...	[more]
A0A178V213	2.4e-26	65.56	Epidermal patterning factor-like protein OS=Arabidopsis thaliana OX=3702 GN=AXX1...	[more]
A0A6D2KFV2	5.3e-26	63.83	Epidermal patterning factor-like protein OS=Microthlaspi erraticum OX=1685480 GN...	[more]
V4P8Z8	5.3e-26	64.13	Epidermal patterning factor-like protein OS=Eutrema salsugineum OX=72664 GN=EUTS...	[more]

BLAST of Clc05G06130 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G14723.1	2.3e-29	64.44	BEST Arabidopsis thaliana protein match is: allergen-related (TAIR:AT3G22820.1);...	[more]
AT3G22820.1	3.1e-26	77.42	allergen-related	[more]
AT2G30370.1	3.5e-22	70.18	allergen-related	[more]
AT2G30370.2	3.5e-22	70.18	allergen-related	[more]
AT1G80133.1	3.0e-05	34.88	unknown protein; LOCATED IN: endomembrane system; Has 154 Blast hits to 154 prot...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF17181	EPF	coord: 48..98 e-value: 6.2E-19 score: 67.7
None	No IPR available	PANTHER	PTHR33109:SF55	EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 4	coord: 40..98
IPR039455	EPIDERMAL PATTERNING FACTOR-like protein	PANTHER	PTHR33109	EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 4	coord: 40..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc05G06130.1	Clc05G06130.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010052	guard cell differentiation
biological_process	GO:0010374	stomatal complex development
cellular_component	GO:0005576	extracellular region