Clc05G04850 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc05G04850
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	28 kDa ribonucleoprotein, chloroplastic
Location	ClcChr05: 3525448 .. 3530287 (-)
RNA-Seq Expression	Clc05G04850
Synteny	Clc05G04850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGCCGCCGCCGCCACCGGAGCCTCATTCTTCACCACTCTCATAAGGGGTTCACGGTCCAAGCACTGGCTCTCTGATTCTCTCCTCTCAACACCATCCACCCAAGTTTTGCCCATATTGTCCCGCTCTCTGGCCATTGAATCGGCTCCGCTCAGAGCTTTCTCGGAGAGGTGGCGGCCGGTTCTGTTCATATCTGCCGCCGTTGTGCAAGGAGAGGCGGCTGTGACGGCAGGGGTTGAAGAGGGAGTGGAGGAGGAGACGGCAGAGAAGGGAGGAGGGGAGGCGGTGGATGGTGGTTCTCCAGTGGAGTCCGGGAGTACTAAGCTGTATTTTGGGAATTTGCCTTACAGTGTTGATAGTGCCCAGCTCGCCGCTATTGTCCAGGATTATGGTGTCGCGGAGCTTATCGAGGTACATTGCCTGCAAATGGCACTGATTAGTTTCGACATTGAATTCTAGTACATGATTTCACTTCTAAGCAATGACATTATATGAAAACTTTGTTTTGGAACCAAGCTCTCATGAGATATCTGGCAAATCACAATGTAGGGTGGGGGTATGAGAGCAACAGTTCCAATTCCTTTTGTACATTAGGTGCTTGATTCCCATATTAGACAAGCTCACAAGGAGCAACTAAGAGACCAGTTATATGACTAAAGATCTGGATGTTTCTGAAGTAATGACCTCAAATCTTAGTGTCACCTACCCAACATTCTATGAGTTTTTGAGACGTCGTTGGGAATTGAGATGCCTATAATTAGTTCAAACATCCACAGAAAACCCACTAGCATGTTTAGGGGCATATAGGTTTGGTATTTGGTGGCAACTACATGTTGATCCAATGAGCTAATATTTTTTATAACAAATTGCTGCAACACCATGAGGCATTCAACAAGTAGGTTTCATGGAATGGAACCATTGTAGAAGAGTACGATTACATTACTAGGGTGCTAACAGTGCCAAGATGGCATCCAATATATTATTTATATGAGGAATGTGCCTCTGTTGTGCAACTTTGAGGGGTTGTATGCATAAATAGCTGGTGACTTTTCTTTACCTTCGTTACCCTAAAATTCAAGCTCAAAGCATCAACCTTAATCAACTACCATTAGTTGGTCTAGTAGTCATTTGGGATAGGTAAAAGCTATGTAGTTGTTCCATGTGGTTCAGAAGATATTAGAAGAAGAAGGGGAAAAAAAAAACATCAACCTTAATTAGAAGTAATAACATGGGGGATCTACTCTCATCCTTTTAATGAAGGCTTGAGTTTGATGGAACTCTGTTGCTAAGTAATAACATGGGGGATCTACTCTCATCCTTGCACTGAAGGCTGGAGTTTGATGGAACTCTGTAGCTACTTATCCTCCCTAGTTGAGAAATTTAAAATGCTGTTTGTGTTGTGCTGGAAAAATGTTAAGGCTCTCTGCTCATATCCTCTATTGTTTTCACCGTGGTTAGCTCTACCTCTTAATAAAAAACGAAGAAATAAGACATCCTTGTAAGAGGAAGATCTGCAGTTCTTTTATATGTTAATGACTATATTAAACTTATATAGAAATTCCTGTAGTGCTTTAAGAGAATAATCCGACGTAGCTATTTCATTTGTCAAATCCTTAAAACAGACTTCTCTACTGGCTGCAGTCAATCTTTACCTTGAACTATTTCACCAAGAGCATATTTTCTCTTTAAAGCTCGTGTTTGTTATGAGTTTCTAATCAATTCGAGTGGTATAAGGTTCTGTATGACAGGAATACTGGAAAAAGTAGAGGATTCGCATTTGTAACCATGAGCAGTATTGAAGATTGCAATAAAGTCATTGAAAATCTGGATGGAACTGTGAGAATCTCTCCTTCACACTTTGTTCTCTCCTTTATGTTACTATATCTATCCTTAGATCGTTTTAAGTTTAGAAATAATTGGAACTACTGGACTCTGATGCTAAATATGAGTATCACTTGTATAATCAGGCTTACATGGGAAGAATTTTGAGGGTTAATTTCTCAGACAAACCCAAGCCCAAGGAACCTTTATATCCAGAAACTGAGTATAAACTTTTTGTCGGAAACTTATCCTGGTCAGTAACATCTGAAAGTTTGACACAAGCATTTCAAGAATATGGAAATGTGATAGGAGCAAGGGTTATTTATAACGGGGAGACTGGAAAGTCACGTGGTTATGGCTTTGTTTCTTATTCAACAAAATCAGAGATGGAAACAGCTCTTGAAGCTCTTAATGAAGTGGTAAGTGTCTGTCTTGGTTCTCCTGTATCCTTTTGTTCACATTGTGATTATATCATATAATATCATGTAGTTCAAATGTGTGTTTTTTTTTCGACTTCATAGGAACTTGAAGGCAGGGTAATACGTGTAAGCTTGGCTGAAGGAAAGCAGGCACAGGGGTCAATGTAGAATTGATTTGATTGTATGTCAAGCATACAATGACTAAACAAGAAATGGGAAAGAGTTTCTACCTAGCTGTTACTGAACAAACCGCAAGTGACTGAATCTTCTCTCTTCTTTCTTGTTGTATATACCCCATTTCCCACTTTTGTACCCGACAAGCTAAACTCAGCGAGAAAAAGAACTTTTTGGTCTCCAGCAATTGTGGTAGAGATATCACATCAATCCTGAGATGATCACAACACTGAAAATGGTTGTATCATGATTAAAAATGTAATAGGAAAGAATTCCTACCTTGCTGTTGCTGCTCAAACACTACAAGTGACTGAATTTTCTTTCTCATTTTTTCACTCCTATACCTTACAAGTGAGAAAATCATTTGATGGTATCTGGCAACTGTGGTAGAGATTGTTGTATTAATCTTGATCCAGGTTGACAATTGACACTAAATCTTACAAACAGCTGTAGCAGGGACTAAGGAGTGATGTCTGAACCAGATGAACTCCACACTACTTAAAGAGAGTGGAAGCCTGTCGCCACTATCTCTTTGAAGATTTGCTCCTCAAAAACACTTTTCCCAAGACTGCACTATTTGCTCAGGTATGAAAGGATCACTCTAGTGTTCGTACAACTAACAATCTGATTGAACAACAAGAAGTCAAGAACTACTACCTTGTATTTGAAACTGATCTCAAAGTACCCACATGCTCCAAATTCAAAAACTCATCTTTGGGGACTTTCAGCAAACACTTGGTGTGCACCCCACCAAACAAACCTAATCTTCAAGGGATTTCTCACCTCAAAAGGGAGAAAAGGAAAAGTTTGGCTGCAGGGCAGTAGTAGGCACTGATGAGCGTAAGAAATACCAACATAGGCACTAGATTGTGCTGTTCCATGTCTCCCAAACCTCAAAAAGCGCCGTATAGGCATAAAAGCACGGTGCTATTGTGTCAGCAGACAAGGAGATCAATGTGCCCTTCTCTTTATGGGTGAAATTATTGAGCAATTTATGTGCTTTGAGGTTTAGGGTCGCTGACTAAAACGAGTGAAATGGCGGCTGCCGCGCATTAAAGTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAATCTAATCTCAAACCTTGAAATGAAACTTATTTGTATGAATTCATGTTAGTTGATAATAGTCAAGTTGGCTGAAATTGAAACTGTTGTCTAATAAAACTACACAATAAATTATTTAATAATTGGTTTTTTCTCAATACAACAACTGTGGATATGGAATCTAACTTCCAGCAACCTTTCTTTAAAAGAATTGAATTCGTAATCAAGTTTTAAAAGGAAACTAGTTTTTTTTTTTTTAGAAATTTAGCTTGATTTTTCTTTTCTTTTTAATAGGAGTGGAAAGTAAATAATACAACCTAGAAACTTATGAGTGGAAGTTGTATTTGTATACTTAATTTTAGAAAACAGAAAACAAAAAACCAAATCGCTTAAATTTACAAAAGAAACTTATATCTAAATGTAAAATATAAATATATTTAATTGCTGATCTTTATTAGTGCATGGATGCAAAAATTGATTATACTAAAATGTAATAGATTATTTTATTTTAAACTGCAAATTAAAAAATGTAAAATTAAAAAATTGATGGAAAAAAAAATATATATAATAAAAATGTCGTTCAAAGATGTCCTAATAAGTTAAAAATTCAGCATCTAAAATTAGATAAACCCAACATGAACATTTTAGGATGCCTAGATATAACAAGATATATGTTGCAAAAAAGTCTTGGCGAAGGTTACTAAAAAGGTTTGATTAATATGACGTCATATTGGCTTTTTGAAAGAAAGAGAAGAACAAAGAAATAGACATTTTGGGGAAATAAATAAATGATAATAATAATAGAACATTTTGTTTTTCGCTTTTATTTTTCCCCCCTCTCGTTTTCCATTTGATATTATTATTATTATTATTTCGAAAATCTTTTCTATTCGATTTAATTGCCTAATTGATTGGATCTATTTATTTATTTTTGAGAAATTGATTGGAAATTAAATGCACGGAGAATGGAAAGAAACATTGACCCAAATTTGTGATGATGCAATTTCACACGACGGCTGGCAGAGAAAAGCAAACAGCTTGAAACCAAAATCCTTAAAATAAAATTTAGAAAAAAAAGAATAATAATAATAAAATCAGTGGCGGAGAAGAAGACTATTCCCCTTGCAAATTTATCCCTACCTCTCTCTCCCGCTTTATCTCTTAAACCCTTCTTCTCTTTCTCTCTCTACAACCTACCCTCACTTTCTTACGCCCCTCCCTTTCTCTCTCTAAATCTTGGTATACTACATCACATGTTTTTGAATTTATCTTTGTTGGGTTCATAGATGAGAATGAATCTGAAATGGGTTTTGTTTTTCTTTTTCGGTGGAGCATTGTAGATCTAAGATTTTGA

mRNA sequence

ATGGCCGCCGCCGCCGCCACCGGAGCCTCATTCTTCACCACTCTCATAAGGGGTTCACGGTCCAAGCACTGGCTCTCTGATTCTCTCCTCTCAACACCATCCACCCAAGTTTTGCCCATATTGTCCCGCTCTCTGGCCATTGAATCGGCTCCGCTCAGAGCTTTCTCGGAGAGGTGGCGGCCGGTTCTGTTCATATCTGCCGCCGTTGTGCAAGGAGAGGCGGCTGTGACGGCAGGGGTTGAAGAGGGAGTGGAGGAGGAGACGGCAGAGAAGGGAGGAGGGGAGGCGGTGGATGGTGGTTCTCCAGTGGAGTCCGGGAGTACTAAGCTGTATTTTGGGAATTTGCCTTACAGTGTTGATAGTGCCCAGCTCGCCGCTATTGTCCAGGATTATGGTGTCGCGGAGCTTATCGAGGTTCTGTATGACAGGAATACTGGAAAAAGTAGAGGATTCGCATTTGTAACCATGAGCAGTATTGAAGATTGCAATAAAGTCATTGAAAATCTGGATGGAACTGCTTACATGGGAAGAATTTTGAGGGTTAATTTCTCAGACAAACCCAAGCCCAAGGAACCTTTATATCCAGAAACTGAGTATAAACTTTTTGTCGGAAACTTATCCTGGTCAGTAACATCTGAAAGTTTGACACAAGCATTTCAAGAATATGGAAATGTGATAGGAGCAAGGGTTATTTATAACGGGGAGACTGGAAAGTCACGTGGTTATGGCTTTGTTTCTTATTCAACAAAATCAGAGATGGAAACAGCTCTTGAAGCTCTTAATGAAGTGGAACTTGAAGGCAGGGTAATACGTGTAAGCTTGGCTGAAGGAAAGCAGGCACAGGGGGATTTCTCACCTCAAAAGGGAGAAAAGGAAAAGTTTGGCTGCAGGGCAGTAGTAGGCACTGATGAGCTGGCGGAGAAGAAGACTATTCCCCTTGCAAATTTATCCCTACCTCTCTCTCCCGCTTTATCTCTTAAACCCTTCTTCTCTTTCTCTCTCTACAACCTACCCTCACTTTCTTACGCCCCTCCCTTTCTCTCTCTAAATCTTGATCTAAGATTTTGA

Coding sequence (CDS)

ATGGCCGCCGCCGCCGCCACCGGAGCCTCATTCTTCACCACTCTCATAAGGGGTTCACGGTCCAAGCACTGGCTCTCTGATTCTCTCCTCTCAACACCATCCACCCAAGTTTTGCCCATATTGTCCCGCTCTCTGGCCATTGAATCGGCTCCGCTCAGAGCTTTCTCGGAGAGGTGGCGGCCGGTTCTGTTCATATCTGCCGCCGTTGTGCAAGGAGAGGCGGCTGTGACGGCAGGGGTTGAAGAGGGAGTGGAGGAGGAGACGGCAGAGAAGGGAGGAGGGGAGGCGGTGGATGGTGGTTCTCCAGTGGAGTCCGGGAGTACTAAGCTGTATTTTGGGAATTTGCCTTACAGTGTTGATAGTGCCCAGCTCGCCGCTATTGTCCAGGATTATGGTGTCGCGGAGCTTATCGAGGTTCTGTATGACAGGAATACTGGAAAAAGTAGAGGATTCGCATTTGTAACCATGAGCAGTATTGAAGATTGCAATAAAGTCATTGAAAATCTGGATGGAACTGCTTACATGGGAAGAATTTTGAGGGTTAATTTCTCAGACAAACCCAAGCCCAAGGAACCTTTATATCCAGAAACTGAGTATAAACTTTTTGTCGGAAACTTATCCTGGTCAGTAACATCTGAAAGTTTGACACAAGCATTTCAAGAATATGGAAATGTGATAGGAGCAAGGGTTATTTATAACGGGGAGACTGGAAAGTCACGTGGTTATGGCTTTGTTTCTTATTCAACAAAATCAGAGATGGAAACAGCTCTTGAAGCTCTTAATGAAGTGGAACTTGAAGGCAGGGTAATACGTGTAAGCTTGGCTGAAGGAAAGCAGGCACAGGGGGATTTCTCACCTCAAAAGGGAGAAAAGGAAAAGTTTGGCTGCAGGGCAGTAGTAGGCACTGATGAGCTGGCGGAGAAGAAGACTATTCCCCTTGCAAATTTATCCCTACCTCTCTCTCCCGCTTTATCTCTTAAACCCTTCTTCTCTTTCTCTCTCTACAACCTACCCTCACTTTCTTACGCCCCTCCCTTTCTCTCTCTAAATCTTGATCTAAGATTTTGA

Protein sequence

MAAAAATGASFFTTLIRGSRSKHWLSDSLLSTPSTQVLPILSRSLAIESAPLRAFSERWRPVLFISAAVVQGEAAVTAGVEEGVEEETAEKGGGEAVDGGSPVESGSTKLYFGNLPYSVDSAQLAAIVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRILRVNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSESLTQAFQEYGNVIGARVIYNGETGKSRGYGFVSYSTKSEMETALEALNEVELEGRVIRVSLAEGKQAQGDFSPQKGEKEKFGCRAVVGTDELAEKKTIPLANLSLPLSPALSLKPFFSFSLYNLPSLSYAPPFLSLNLDLRF

Homology

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BLAST of Clc05G04850 vs. NCBI nr
Match: XP_004134038.1 (28 kDa ribonucleoprotein, chloroplastic [Cucumis sativus] >KGN56810.1 hypothetical protein Csa_010830 [Cucumis sativus])

HSP 1 Score: 480.7 bits (1236), Expect = 1.1e-131
Identity = 250/281 (88.97%), Postives = 262/281 (93.24%), Query Frame = 0


Query: 2   AAAAATGASFFTTLIRGSRSKHWLSDSLLSTPSTQVLPILSRSLAIESAPLRAFSERWRP 61
           AAAAATGASFF T +RGSRSKHWLSDSLL+TPSTQVLPILSRSLAIES  LRA SE+WRP
Sbjct: 3   AAAAATGASFFATSLRGSRSKHWLSDSLLATPSTQVLPILSRSLAIESPLLRASSEKWRP 62

Query: 62  VLFISAAVVQGEAAVTAGVEEGVEEETAEKGGGEAVDGGSPVESGSTKLYFGNLPYSVDS 121
           V+ ISAAVVQGE AVT GVEEGVEEET        V+GGSPVESGSTKLYFGNLPYSVDS
Sbjct: 63  VMIISAAVVQGETAVTVGVEEGVEEET-------EVEGGSPVESGSTKLYFGNLPYSVDS 122

Query: 122 AQLAAIVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRILRV 181
           +QLAAIVQDYG+AELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDG+AYMGRILRV
Sbjct: 123 SQLAAIVQDYGIAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGSAYMGRILRV 182

Query: 182 NFSDKPKPKEPLYPETEYKLFVGNLSWSVTSESLTQAFQEYGNVIGARVIYNGETGKSRG 241
           NFSDKPKPKEPLYPETEYKLFVGNLSWSVTSE LTQAFQEYGNV+GARVIY+GETGKSRG
Sbjct: 183 NFSDKPKPKEPLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYDGETGKSRG 242

Query: 242 YGFVSYSTKSEMETALEALNEVELEGRVIRVSLAEGKQAQG 283
           YGFVSYSTKSEMETALE +NE+ELEGRVIRVSLAEGKQA G
Sbjct: 243 YGFVSYSTKSEMETALETINELELEGRVIRVSLAEGKQAHG 276

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BLAST of Clc05G04850 vs. NCBI nr
Match: XP_016898952.1 (PREDICTED: LOW QUALITY PROTEIN: putative G3BP-like protein [Cucumis melo])

HSP 1 Score: 474.2 bits (1219), Expect = 1.0e-129
Identity = 248/271 (91.51%), Postives = 254/271 (93.73%), Query Frame = 0


Query: 2   AAAAATGASFFTTLIRGSRSKHWLSDSLLSTPSTQVLPILSRSLAIESAPLRAFSERWRP 61
           AAAAATGASFFTT +RGSRSKHW SDSLL+TPSTQVLPILSRSL IES PLRA SERWRP
Sbjct: 3   AAAAATGASFFTTPLRGSRSKHWFSDSLLATPSTQVLPILSRSLTIESPPLRASSERWRP 62

Query: 62  VLFISAAVVQGEAAVTAGVEEGVEEETAEKGGGEAVDGGSPVESGSTKLYFGNLPYSVDS 121
           VL ISAAVVQGE AV  GVEEGVEEET       AV+GGSPVESGSTKLYFGNLPYSVDS
Sbjct: 63  VLIISAAVVQGETAVMVGVEEGVEEET-------AVEGGSPVESGSTKLYFGNLPYSVDS 122

Query: 122 AQLAAIVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRILRV 181
           +QLAAIVQD+GVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRILRV
Sbjct: 123 SQLAAIVQDHGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRILRV 182

Query: 182 NFSDKPKPKEPLYPETEYKLFVGNLSWSVTSESLTQAFQEYGNVIGARVIYNGETGKSRG 241
           NFSDKPKPKEPLYPETEYKLFVGNLSWSVTSE LTQAFQEYGNV+GARVIYNGETGKSRG
Sbjct: 183 NFSDKPKPKEPLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYNGETGKSRG 242

Query: 242 YGFVSYSTKSEMETALEALNEVELEGRVIRV 273
           YGFVSYSTKSEMETALEALNEVELEGRVIRV
Sbjct: 243 YGFVSYSTKSEMETALEALNEVELEGRVIRV 266

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BLAST of Clc05G04850 vs. NCBI nr
Match: XP_022157973.1 (28 kDa ribonucleoprotein, chloroplastic [Momordica charantia])

HSP 1 Score: 462.6 bits (1189), Expect = 3.0e-126
Identity = 244/285 (85.61%), Postives = 259/285 (90.88%), Query Frame = 0


Query: 1   MAAAAATGASFFTT---LIRGSRSKHWLSDSLLSTPSTQVLPILSRSLAIESAPLRAFSE 60
           MAAAAAT  S FT      +G RSKHWLSDSLL+ PSTQ+LP+LSR LA+ESA LRAFSE
Sbjct: 1   MAAAAATVGSSFTASTHSFKGLRSKHWLSDSLLAMPSTQMLPVLSRYLALESASLRAFSE 60

Query: 61  RWRPVLFISAAVVQGEAAVTAGVEEGVEEETAEKGGGEAVDGGSPVESGSTKLYFGNLPY 120
           +WRPVL ISAAVVQGE AVTA  EEGV E   EKGGGEAV GGSPVE+GSTKLYFGNLPY
Sbjct: 61  KWRPVLGISAAVVQGEPAVTADAEEGVAE---EKGGGEAVGGGSPVEAGSTKLYFGNLPY 120

Query: 121 SVDSAQLAAIVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGR 180
           SVDS+QLA IVQ++GV ELIEVLYDRNTGKSRGFAFVTMSSIEDCN+VIENLDG+AYMGR
Sbjct: 121 SVDSSQLAGIVQEHGVPELIEVLYDRNTGKSRGFAFVTMSSIEDCNRVIENLDGSAYMGR 180

Query: 181 ILRVNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSESLTQAFQEYGNVIGARVIYNGETG 240
           +LRVNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSESLTQAFQEYGNV+GARVIYNGETG
Sbjct: 181 VLRVNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGETG 240

Query: 241 KSRGYGFVSYSTKSEMETALEALNEVELEGRVIRVSLAEGKQAQG 283
           +SRGYGFVSYSTK EME ALEALNEVELEGRVIRVSLAEGKQAQG
Sbjct: 241 RSRGYGFVSYSTKPEMEKALEALNEVELEGRVIRVSLAEGKQAQG 282

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BLAST of Clc05G04850 vs. NCBI nr
Match: KAA0049207.1 (putative G3BP-like protein [Cucumis melo var. makuwa] >TYK17351.1 putative G3BP-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 460.7 bits (1184), Expect = 1.2e-125
Identity = 244/283 (86.22%), Postives = 252/283 (89.05%), Query Frame = 0


Query: 2   AAAAATGASFFTTLIRGSRSKHWLSDSLLSTPSTQVLPILSRSLAIESAPLRAFSERWRP 61
           AAAAATGASFFTT +RGSRSKHW SDSLL+TPSTQVLPILSRSL IES PLRA SERWRP
Sbjct: 3   AAAAATGASFFTTPLRGSRSKHWFSDSLLATPSTQVLPILSRSLTIESPPLRASSERWRP 62

Query: 62  VLFISAAVVQGEAAVTAGVEEGVEEETAEKGGGEAVDGGSPVESGSTKLYFGNLPYSVDS 121
           VL ISAAVVQGE AVT GVEEGVEEET       AV+GGSPVESGSTKLYFGNLPYSVDS
Sbjct: 63  VLIISAAVVQGETAVTVGVEEGVEEET-------AVEGGSPVESGSTKLYFGNLPYSVDS 122

Query: 122 AQLAAIVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRILRV 181
           +QLAAIVQD+GVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRILRV
Sbjct: 123 SQLAAIVQDHGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRILRV 182

Query: 182 NFSDKPKPKEPLYPETEYKLFVGNLSWSVTSESLTQAFQEYGNVIGARVIYNGETGKSRG 241
           NFSDKPKPKEPLYPETEYKLFVGNLSWSVTSE LTQAFQEYGNV+GARVIYNGETGKSRG
Sbjct: 183 NFSDKPKPKEPLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYNGETGKSRG 242

Query: 242 YGFVSYSTKSEMETALEALNEVELEGRVIRVSLAEGKQAQGDF 285
           YGFVSYSTKSEMETALEALNEV   G        +  Q Q D+
Sbjct: 243 YGFVSYSTKSEMETALEALNEVVSVGTYFVGQYYQVLQQQPDY 278

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BLAST of Clc05G04850 vs. NCBI nr
Match: XP_022979333.1 (putative G3BP-like protein [Cucurbita maxima])

HSP 1 Score: 459.5 bits (1181), Expect = 2.6e-125
Identity = 236/269 (87.73%), Postives = 249/269 (92.57%), Query Frame = 0


Query: 4   AAATGASFFTTLIRGSRSKHWLSDSLLSTPSTQVLPILSRSLAIESAPLRAFSERWRPVL 63
           AAATG SFFTT IRGSRSKHWLSDS L+TPSTQVLPILSR LA++SAPLRAFSERWRP  
Sbjct: 3   AAATGVSFFTTPIRGSRSKHWLSDSPLATPSTQVLPILSRPLAVKSAPLRAFSERWRPAT 62

Query: 64  FISAAVVQGEAAVTAGVEEGVEEETAEKGGGEAVDGGSPVESGSTKLYFGNLPYSVDSAQ 123
            ISAA VQGEAA+T G EEGVEEETAEKGGGEAVDGGSPVESGSTKLYFGNLPYSVDS Q
Sbjct: 63  VISAASVQGEAALTVGFEEGVEEETAEKGGGEAVDGGSPVESGSTKLYFGNLPYSVDSPQ 122

Query: 124 LAAIVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRILRVNF 183
           LAAIVQDYGVAELIEVLYDR+TGKSRGFAFVTM+SIEDCNKVIENL+G  YMGRILRVNF
Sbjct: 123 LAAIVQDYGVAELIEVLYDRDTGKSRGFAFVTMNSIEDCNKVIENLNGATYMGRILRVNF 182

Query: 184 SDKPKPKEPLYPETEYKLFVGNLSWSVTSESLTQAFQEYGNVIGARVIYNGETGKSRGYG 243
           SDKPKPKE L+PETEYKLFV NL+WSVTSESLTQAFQEYGNV+GARVIYNGETG+SRGYG
Sbjct: 183 SDKPKPKEHLFPETEYKLFVRNLAWSVTSESLTQAFQEYGNVVGARVIYNGETGRSRGYG 242

Query: 244 FVSYSTKSEMETALEALNEVELEGRVIRV 273
           FVSYSTKSEMETAL ALN+   EGRV+ V
Sbjct: 243 FVSYSTKSEMETALVALNDAVFEGRVLSV 271

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BLAST of Clc05G04850 vs. ExPASy Swiss-Prot
Match: P28644 (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.5e-38
Identity = 93/214 (43.46%), Postives = 134/214 (62.62%), Query Frame = 0


Query: 68  AVVQGEAAVTAGVEEGVEEETAEKGGGEAVDGGS-PVESGSTKLYFGNLPYSVDSAQLAA 127
           AV++GE+     V  G E + +++GG E   G S P E    KL+ GNLPY VDS +LA 
Sbjct: 16  AVLEGESDPEGAVSWGSETQVSDEGGVEGGQGFSEPPE--EAKLFVGNLPYDVDSEKLAG 75

Query: 128 IVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRILRVNFSDK 187
           I    GV E+ EV+Y+R T +SRGF FVTMS++E+  K +E L+G    GR L VN    
Sbjct: 76  IFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVN-KAA 135

Query: 188 PKPKEPLYPETEY----KLFVGNLSWSVTSESLTQAFQEYGNVIGARVIYNGETGKSRGY 247
           P+      P  ++    +++VGNL W V +  L Q F E+G V+ ARV+ + ETG+SRG+
Sbjct: 136 PRGSPERAPRGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGF 195

Query: 248 GFVSYSTKSEMETALEALNEVELEGRVIRVSLAE 277
           GFV+ S++SE+  A+ AL+   L+GR +RV++AE
Sbjct: 196 GFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAE 226

[Close]

BLAST of Clc05G04850 vs. ExPASy Swiss-Prot
Match: P19684 (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 4.7e-37
Identity = 107/303 (35.31%), Postives = 170/303 (56.11%), Query Frame = 0


Query: 3   AAAATGASFFTTLIRGSRSKHWLSDSLLSTPSTQVLPILSRSLAIESAPLRA---FSERW 62
           AA A+ +S     +   + K  +    LST +T        +  I S  L+A    S  +
Sbjct: 9   AATASTSSTSLLYLFTQKPKFSVDHLSLSTYNTHF------NFKINSTKLKAHFPISSLY 68

Query: 63  RPVLFIS--AAVVQG----------EAAVTAGVEEGVEEETAEKGGGEAVDGGSPVESGS 122
           R  +F+S  A+V  G          E A++A  EE +EE+  E+   E+V+GG       
Sbjct: 69  RSSIFLSTCASVSDGVEVVQEDDEEEVALSAEEEEEIEEK-EERVESESVEGG------- 128

Query: 123 TKLYFGNLPYSVDSAQLAAIVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIE 182
            +LY GNLP+S+ S+QL+ I  + G    +E++YDR T +SRGFAFVTM S+E+  + I 
Sbjct: 129 -RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIR 188

Query: 183 NLDGTAYMGRILRVNFSDKPKPKE------------PLYPETEYKLFVGNLSWSVTSESL 242
             DG+   GR ++VNF + P+  E              + ++ +KL+V NLSW++TS+ L
Sbjct: 189 LFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGL 248

Query: 243 TQAFQEYGNVIGARVIYNGETGKSRGYGFVSYSTKSEMETALEALNEVELEGRVIRVSLA 279
             AF +    + A+VIY+  +G+SRG+GF+++S+   M +AL+ +NEVELEGR +R+++A
Sbjct: 249 RDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNVA 296

[Close]

BLAST of Clc05G04850 vs. ExPASy Swiss-Prot
Match: P19683 (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 6.1e-37
Identity = 84/213 (39.44%), Postives = 129/213 (60.56%), Query Frame = 0


Query: 81  EEGVEEETAEKGGGEAVDGGSPVES-----GSTKLYFGNLPYSVDSAQLAAIVQDYGVAE 140
           EEG  E   + G  + V+     E         KL+ GNLPY VDS  LA + +  GV E
Sbjct: 104 EEGFVEAVGDAGESDEVEADEEEEEFQEPPEDAKLFVGNLPYDVDSEGLARLFEQAGVVE 163

Query: 141 LIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRILRVNFS----DKPKPKE 200
           + EV+Y+R+T +SRGF FVTMS++E+  K +E  +     GR+L VN +    ++P+ + 
Sbjct: 164 IAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPE-RP 223

Query: 201 PLYPETEYKLFVGNLSWSVTSESLTQAFQEYGNVIGARVIYNGETGKSRGYGFVSYSTKS 260
           P   E  Y+++VGN+ W +    L Q F E+G V+ ARV+Y+ ETG+SRG+GFV+ ++++
Sbjct: 224 PRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEA 283

Query: 261 EMETALEALNEVELEGRVIRVSLAEGKQAQGDF 285
           EM  A+  L+   L+GR IRV++AE +  +  F
Sbjct: 284 EMSDAIANLDGQSLDGRTIRVNVAEDRSRRNTF 315

[Close]

BLAST of Clc05G04850 vs. ExPASy Swiss-Prot
Match: Q9FGS0 (RNA-binding protein CP31B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31B PE=1 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 2.3e-36
Identity = 99/266 (37.22%), Postives = 147/266 (55.26%), Query Frame = 0


Query: 19  SRSKHWLSDSLLSTPSTQVLPILSRSLAIESAPLRAF---SERWRPVLFISAAVVQGEAA 78
           S   H  + SL S P    L + S++L   S+P+  F   +  W       A   +GE  
Sbjct: 34  SSESHRFNFSLSSRPVNLTLSLKSKTLR-NSSPVVTFVSQTSNW-------AEEEEGEDG 93

Query: 79  VTAGVEEGVEEETAEKGGGEAVDG-GSPVESGSTKLYFGNLPYSVDSAQLAAIVQDYGVA 138
              G    V+E        E+ DG G P      KL+ GNLPY VDS  LA + +  G  
Sbjct: 94  SIGGTSVTVDESF------ESEDGVGFPEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTV 153

Query: 139 ELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRILRVNFS----DKPKPK 198
           E+ EV+Y+R+T +SRGF FVTMS++E+  K +E  +     GR L VN +     +P+ +
Sbjct: 154 EISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRGSRPE-R 213

Query: 199 EPLYPETEYKLFVGNLSWSVTSESLTQAFQEYGNVIGARVIYNGETGKSRGYGFVSYSTK 258
           +P   +  ++++VGNL W V S  L + F E+G V+ ARV+ + ETG+SRG+GFV  S +
Sbjct: 214 QPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNE 273

Query: 259 SEMETALEALNEVELEGRVIRVSLAE 277
           +E+  A+ AL+   LEGR I+V++AE
Sbjct: 274 NEVNVAIAALDGQNLEGRAIKVNVAE 284

[Close]

BLAST of Clc05G04850 vs. ExPASy Swiss-Prot
Match: Q08935 (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 8.8e-36
Identity = 82/202 (40.59%), Postives = 122/202 (60.40%), Query Frame = 0


Query: 98  DGGSPVE-----SGSTKLYFGNLPYSVDSAQLAAIVQDYGVAELIEVLYDRNTGKSRGFA 157
           DG   VE     S   K++ GNLP+S DSA LA + +  G  E++EV+YD+ TG+SRGF 
Sbjct: 72  DGDDGVEEERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFG 131

Query: 158 FVTMSSIEDCNKVIENLDGTAYMGRILRVNFSDKPKPKEPL----------YPETEYKLF 217
           FVTMSS E+     +  +G    GR LRVN    P+ +E              ++  +++
Sbjct: 132 FVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSSNRVY 191

Query: 218 VGNLSWSVTSESLTQAFQEYGNVIGARVIYNGETGKSRGYGFVSYSTKSEMETALEALNE 277
           VGNL+W V  ++L   F E G V+ A+V+Y+ ++G+SRG+GFV+YS+  E+  A+E+L+ 
Sbjct: 192 VGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDG 251

Query: 278 VELEGRVIRVSLAEGKQAQGDF 285
           V+L GR IRVS AE +  +  F
Sbjct: 252 VDLNGRAIRVSPAEARPPRRQF 273

[Close]

BLAST of Clc05G04850 vs. ExPASy TrEMBL
Match: A0A0A0L496 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134590 PE=4 SV=1)

HSP 1 Score: 480.7 bits (1236), Expect = 5.2e-132
Identity = 250/281 (88.97%), Postives = 262/281 (93.24%), Query Frame = 0


Query: 2   AAAAATGASFFTTLIRGSRSKHWLSDSLLSTPSTQVLPILSRSLAIESAPLRAFSERWRP 61
           AAAAATGASFF T +RGSRSKHWLSDSLL+TPSTQVLPILSRSLAIES  LRA SE+WRP
Sbjct: 3   AAAAATGASFFATSLRGSRSKHWLSDSLLATPSTQVLPILSRSLAIESPLLRASSEKWRP 62

Query: 62  VLFISAAVVQGEAAVTAGVEEGVEEETAEKGGGEAVDGGSPVESGSTKLYFGNLPYSVDS 121
           V+ ISAAVVQGE AVT GVEEGVEEET        V+GGSPVESGSTKLYFGNLPYSVDS
Sbjct: 63  VMIISAAVVQGETAVTVGVEEGVEEET-------EVEGGSPVESGSTKLYFGNLPYSVDS 122

Query: 122 AQLAAIVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRILRV 181
           +QLAAIVQDYG+AELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDG+AYMGRILRV
Sbjct: 123 SQLAAIVQDYGIAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGSAYMGRILRV 182

Query: 182 NFSDKPKPKEPLYPETEYKLFVGNLSWSVTSESLTQAFQEYGNVIGARVIYNGETGKSRG 241
           NFSDKPKPKEPLYPETEYKLFVGNLSWSVTSE LTQAFQEYGNV+GARVIY+GETGKSRG
Sbjct: 183 NFSDKPKPKEPLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYDGETGKSRG 242

Query: 242 YGFVSYSTKSEMETALEALNEVELEGRVIRVSLAEGKQAQG 283
           YGFVSYSTKSEMETALE +NE+ELEGRVIRVSLAEGKQA G
Sbjct: 243 YGFVSYSTKSEMETALETINELELEGRVIRVSLAEGKQAHG 276

[Close]

BLAST of Clc05G04850 vs. ExPASy TrEMBL
Match: A0A1S4DSH7 (LOW QUALITY PROTEIN: putative G3BP-like protein OS=Cucumis melo OX=3656 GN=LOC103483544 PE=4 SV=1)

HSP 1 Score: 474.2 bits (1219), Expect = 4.9e-130
Identity = 248/271 (91.51%), Postives = 254/271 (93.73%), Query Frame = 0


Query: 2   AAAAATGASFFTTLIRGSRSKHWLSDSLLSTPSTQVLPILSRSLAIESAPLRAFSERWRP 61
           AAAAATGASFFTT +RGSRSKHW SDSLL+TPSTQVLPILSRSL IES PLRA SERWRP
Sbjct: 3   AAAAATGASFFTTPLRGSRSKHWFSDSLLATPSTQVLPILSRSLTIESPPLRASSERWRP 62

Query: 62  VLFISAAVVQGEAAVTAGVEEGVEEETAEKGGGEAVDGGSPVESGSTKLYFGNLPYSVDS 121
           VL ISAAVVQGE AV  GVEEGVEEET       AV+GGSPVESGSTKLYFGNLPYSVDS
Sbjct: 63  VLIISAAVVQGETAVMVGVEEGVEEET-------AVEGGSPVESGSTKLYFGNLPYSVDS 122

Query: 122 AQLAAIVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRILRV 181
           +QLAAIVQD+GVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRILRV
Sbjct: 123 SQLAAIVQDHGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRILRV 182

Query: 182 NFSDKPKPKEPLYPETEYKLFVGNLSWSVTSESLTQAFQEYGNVIGARVIYNGETGKSRG 241
           NFSDKPKPKEPLYPETEYKLFVGNLSWSVTSE LTQAFQEYGNV+GARVIYNGETGKSRG
Sbjct: 183 NFSDKPKPKEPLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYNGETGKSRG 242

Query: 242 YGFVSYSTKSEMETALEALNEVELEGRVIRV 273
           YGFVSYSTKSEMETALEALNEVELEGRVIRV
Sbjct: 243 YGFVSYSTKSEMETALEALNEVELEGRVIRV 266

[Close]

BLAST of Clc05G04850 vs. ExPASy TrEMBL
Match: A0A6J1DUT6 (28 kDa ribonucleoprotein, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111024570 PE=4 SV=1)

HSP 1 Score: 462.6 bits (1189), Expect = 1.5e-126
Identity = 244/285 (85.61%), Postives = 259/285 (90.88%), Query Frame = 0


Query: 1   MAAAAATGASFFTT---LIRGSRSKHWLSDSLLSTPSTQVLPILSRSLAIESAPLRAFSE 60
           MAAAAAT  S FT      +G RSKHWLSDSLL+ PSTQ+LP+LSR LA+ESA LRAFSE
Sbjct: 1   MAAAAATVGSSFTASTHSFKGLRSKHWLSDSLLAMPSTQMLPVLSRYLALESASLRAFSE 60

Query: 61  RWRPVLFISAAVVQGEAAVTAGVEEGVEEETAEKGGGEAVDGGSPVESGSTKLYFGNLPY 120
           +WRPVL ISAAVVQGE AVTA  EEGV E   EKGGGEAV GGSPVE+GSTKLYFGNLPY
Sbjct: 61  KWRPVLGISAAVVQGEPAVTADAEEGVAE---EKGGGEAVGGGSPVEAGSTKLYFGNLPY 120

Query: 121 SVDSAQLAAIVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGR 180
           SVDS+QLA IVQ++GV ELIEVLYDRNTGKSRGFAFVTMSSIEDCN+VIENLDG+AYMGR
Sbjct: 121 SVDSSQLAGIVQEHGVPELIEVLYDRNTGKSRGFAFVTMSSIEDCNRVIENLDGSAYMGR 180

Query: 181 ILRVNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSESLTQAFQEYGNVIGARVIYNGETG 240
           +LRVNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSESLTQAFQEYGNV+GARVIYNGETG
Sbjct: 181 VLRVNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGETG 240

Query: 241 KSRGYGFVSYSTKSEMETALEALNEVELEGRVIRVSLAEGKQAQG 283
           +SRGYGFVSYSTK EME ALEALNEVELEGRVIRVSLAEGKQAQG
Sbjct: 241 RSRGYGFVSYSTKPEMEKALEALNEVELEGRVIRVSLAEGKQAQG 282

[Close]

BLAST of Clc05G04850 vs. ExPASy TrEMBL
Match: A0A5D3CZH4 (Putative G3BP-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G002080 PE=4 SV=1)

HSP 1 Score: 460.7 bits (1184), Expect = 5.6e-126
Identity = 244/283 (86.22%), Postives = 252/283 (89.05%), Query Frame = 0


Query: 2   AAAAATGASFFTTLIRGSRSKHWLSDSLLSTPSTQVLPILSRSLAIESAPLRAFSERWRP 61
           AAAAATGASFFTT +RGSRSKHW SDSLL+TPSTQVLPILSRSL IES PLRA SERWRP
Sbjct: 3   AAAAATGASFFTTPLRGSRSKHWFSDSLLATPSTQVLPILSRSLTIESPPLRASSERWRP 62

Query: 62  VLFISAAVVQGEAAVTAGVEEGVEEETAEKGGGEAVDGGSPVESGSTKLYFGNLPYSVDS 121
           VL ISAAVVQGE AVT GVEEGVEEET       AV+GGSPVESGSTKLYFGNLPYSVDS
Sbjct: 63  VLIISAAVVQGETAVTVGVEEGVEEET-------AVEGGSPVESGSTKLYFGNLPYSVDS 122

Query: 122 AQLAAIVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRILRV 181
           +QLAAIVQD+GVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRILRV
Sbjct: 123 SQLAAIVQDHGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRILRV 182

Query: 182 NFSDKPKPKEPLYPETEYKLFVGNLSWSVTSESLTQAFQEYGNVIGARVIYNGETGKSRG 241
           NFSDKPKPKEPLYPETEYKLFVGNLSWSVTSE LTQAFQEYGNV+GARVIYNGETGKSRG
Sbjct: 183 NFSDKPKPKEPLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYNGETGKSRG 242

Query: 242 YGFVSYSTKSEMETALEALNEVELEGRVIRVSLAEGKQAQGDF 285
           YGFVSYSTKSEMETALEALNEV   G        +  Q Q D+
Sbjct: 243 YGFVSYSTKSEMETALEALNEVVSVGTYFVGQYYQVLQQQPDY 278

[Close]

BLAST of Clc05G04850 vs. ExPASy TrEMBL
Match: A0A6J1IVW4 (putative G3BP-like protein OS=Cucurbita maxima OX=3661 GN=LOC111479089 PE=4 SV=1)

HSP 1 Score: 459.5 bits (1181), Expect = 1.2e-125
Identity = 236/269 (87.73%), Postives = 249/269 (92.57%), Query Frame = 0


Query: 4   AAATGASFFTTLIRGSRSKHWLSDSLLSTPSTQVLPILSRSLAIESAPLRAFSERWRPVL 63
           AAATG SFFTT IRGSRSKHWLSDS L+TPSTQVLPILSR LA++SAPLRAFSERWRP  
Sbjct: 3   AAATGVSFFTTPIRGSRSKHWLSDSPLATPSTQVLPILSRPLAVKSAPLRAFSERWRPAT 62

Query: 64  FISAAVVQGEAAVTAGVEEGVEEETAEKGGGEAVDGGSPVESGSTKLYFGNLPYSVDSAQ 123
            ISAA VQGEAA+T G EEGVEEETAEKGGGEAVDGGSPVESGSTKLYFGNLPYSVDS Q
Sbjct: 63  VISAASVQGEAALTVGFEEGVEEETAEKGGGEAVDGGSPVESGSTKLYFGNLPYSVDSPQ 122

Query: 124 LAAIVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRILRVNF 183
           LAAIVQDYGVAELIEVLYDR+TGKSRGFAFVTM+SIEDCNKVIENL+G  YMGRILRVNF
Sbjct: 123 LAAIVQDYGVAELIEVLYDRDTGKSRGFAFVTMNSIEDCNKVIENLNGATYMGRILRVNF 182

Query: 184 SDKPKPKEPLYPETEYKLFVGNLSWSVTSESLTQAFQEYGNVIGARVIYNGETGKSRGYG 243
           SDKPKPKE L+PETEYKLFV NL+WSVTSESLTQAFQEYGNV+GARVIYNGETG+SRGYG
Sbjct: 183 SDKPKPKEHLFPETEYKLFVRNLAWSVTSESLTQAFQEYGNVVGARVIYNGETGRSRGYG 242

Query: 244 FVSYSTKSEMETALEALNEVELEGRVIRV 273
           FVSYSTKSEMETAL ALN+   EGRV+ V
Sbjct: 243 FVSYSTKSEMETALVALNDAVFEGRVLSV 271

[Close]

BLAST of Clc05G04850 vs. TAIR 10
Match: AT1G60000.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 268.9 bits (686), Expect = 6.0e-72
Identity = 135/221 (61.09%), Postives = 178/221 (80.54%), Query Frame = 0


Query: 60  RPVLFISAAVVQGEAAVTAGVEEGVEEETAEKGGGEAVDGGSPVESGSTKLYFGNLPYSV 119
           +P+L  S +  +    ++  +   +EEE  + G    +D   P  + +TKLYFGNLPY+V
Sbjct: 40  KPLLISSRSCSRRFRVLSETITVKLEEEEKDDGASAVLD---PPAAVNTKLYFGNLPYNV 99

Query: 120 DSAQLAAIVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRIL 179
           DSA LA I+QD+   EL+EVLY+R+TG+SRGFAFVTMS++EDCN +I+NLDGT Y+GR L
Sbjct: 100 DSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRAL 159

Query: 180 RVNFSDKPKP-KEPLYPETEYKLFVGNLSWSVTSESLTQAFQEYGNVIGARVIYNGETGK 239
           +VNF+DKPKP KEPLYPETE+KLFVGNLSW+VTSESL  AF+E G+V+GARV+++G+TG+
Sbjct: 160 KVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGR 219

Query: 240 SRGYGFVSYSTKSEMETALEALNEVELEGRVIRVSLAEGKQ 280
           SRGYGFV YS+K+EMETALE+L+  ELEGR IRV+LA+GK+
Sbjct: 220 SRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLAQGKK 257

[Close]

BLAST of Clc05G04850 vs. TAIR 10
Match: AT5G50250.1 (chloroplast RNA-binding protein 31B )

HSP 1 Score: 154.5 bits (389), Expect = 1.6e-37
Identity = 99/266 (37.22%), Postives = 147/266 (55.26%), Query Frame = 0


Query: 19  SRSKHWLSDSLLSTPSTQVLPILSRSLAIESAPLRAF---SERWRPVLFISAAVVQGEAA 78
           S   H  + SL S P    L + S++L   S+P+  F   +  W       A   +GE  
Sbjct: 34  SSESHRFNFSLSSRPVNLTLSLKSKTLR-NSSPVVTFVSQTSNW-------AEEEEGEDG 93

Query: 79  VTAGVEEGVEEETAEKGGGEAVDG-GSPVESGSTKLYFGNLPYSVDSAQLAAIVQDYGVA 138
              G    V+E        E+ DG G P      KL+ GNLPY VDS  LA + +  G  
Sbjct: 94  SIGGTSVTVDESF------ESEDGVGFPEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTV 153

Query: 139 ELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRILRVNFS----DKPKPK 198
           E+ EV+Y+R+T +SRGF FVTMS++E+  K +E  +     GR L VN +     +P+ +
Sbjct: 154 EISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRGSRPE-R 213

Query: 199 EPLYPETEYKLFVGNLSWSVTSESLTQAFQEYGNVIGARVIYNGETGKSRGYGFVSYSTK 258
           +P   +  ++++VGNL W V S  L + F E+G V+ ARV+ + ETG+SRG+GFV  S +
Sbjct: 214 QPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNE 273

Query: 259 SEMETALEALNEVELEGRVIRVSLAE 277
           +E+  A+ AL+   LEGR I+V++AE
Sbjct: 274 NEVNVAIAALDGQNLEGRAIKVNVAE 284

[Close]

BLAST of Clc05G04850 vs. TAIR 10
Match: AT2G37220.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 148.3 bits (373), Expect = 1.2e-35
Identity = 82/216 (37.96%), Postives = 123/216 (56.94%), Query Frame = 0


Query: 85  EEETAEKGGGEAVDGGSPVESGSTKLYFGNLPYSVDSAQLAAIVQDYGVAELIEVLYDRN 144
           E E  E G  +         S   KL+ GNLP++VDSAQLA + +  G  E++EV+YD+ 
Sbjct: 68  EFEVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKI 127

Query: 145 TGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRILRVNFSDKPKPKEPLY---PETEY-- 204
           TG+SRGF FVTMSS+ +     +  +G    GR LRVN    P  +E  +   P + +  
Sbjct: 128 TGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGS 187

Query: 205 -----------------KLFVGNLSWSVTSESLTQAFQEYGNVIGARVIYNGETGKSRGY 264
                            +++VGNLSW V   +L   F E G V+ ARVIY+ ++G+S+G+
Sbjct: 188 SGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGF 247

Query: 265 GFVSYSTKSEMETALEALNEVELEGRVIRVSLAEGK 279
           GFV+Y +  E++ A+++L+  +L+GR IRVS AE +
Sbjct: 248 GFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEAR 283

[Close]

BLAST of Clc05G04850 vs. TAIR 10
Match: AT4G24770.1 (31-kDa RNA binding protein )

HSP 1 Score: 147.5 bits (371), Expect = 2.0e-35
Identity = 85/210 (40.48%), Postives = 124/210 (59.05%), Query Frame = 0


Query: 71  QGEAAVTAGVEEGVEEETAEKGGGEAVDGGSPVESGSTKLYFGNLPYSVDSAQLAAIVQD 130
           +G+A+    V EG E E     G  +     P  S   KL+ GNL Y V+S  LA + + 
Sbjct: 114 EGDAS-EGDVSEGDESEGDVSEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQ 173

Query: 131 YGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRILRVNFS----DK 190
            G  E+ EV+Y+R T +SRGF FVTMSS+++    +E  +     GR+L VN +     +
Sbjct: 174 AGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSR 233

Query: 191 PKPKEPLYPETEYKLFVGNLSWSVTSESLTQAFQEYGNVIGARVIYNGETGKSRGYGFVS 250
           P+ + P   E  ++++VGNL W V +  L Q F E+G V+ ARV+Y+ ETG+SRG+GFV+
Sbjct: 234 PE-RAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVT 293

Query: 251 YSTKSEMETALEALNEVELEGRVIRVSLAE 277
            S   E+  A+ AL+   LEGR IRV++AE
Sbjct: 294 MSDVDELNEAISALDGQNLEGRAIRVNVAE 321

[Close]

BLAST of Clc05G04850 vs. TAIR 10
Match: AT3G52380.1 (chloroplast RNA-binding protein 33 )

HSP 1 Score: 144.8 bits (364), Expect = 1.3e-34
Identity = 107/313 (34.19%), Postives = 169/313 (53.99%), Query Frame = 0


Query: 2   AAAAATGASFFTTLIRGSRSKHWLSDSLLSTPSTQVLPILSRSLAIESAPLRAFSERWRP 61
           AAA A+ A+ F  L+    S H  S+S L    T   P   + +A    PL   S   R 
Sbjct: 14  AAATASSAATFNPLL----SSH--SNSQLFYRFT---PKSFKLVANCPNPLILHSNIRRH 73

Query: 62  VLFISAAVVQGEA--AVTAGVEEGVEEETAEKG--GGEAVDGGSPVESGS---TKLYFGN 121
             F +A      A   + A VEE  EEE  E+G  G E V+        S    +LY GN
Sbjct: 74  RFFCAAETEASSADDEIQASVEE--EEEVEEEGDEGEEEVEEEKQTTQASGEEGRLYVGN 133

Query: 122 LPYSVDSAQLAAIVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAY 181
           LPY++ S++L+ I  + G    ++++YD+ T +SRGF FVTM SIE+  + ++  + +  
Sbjct: 134 LPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQI 193

Query: 182 MGRILRVNFSDKPKPKE------------PLYPETEYKLFVGNLSWSVTSESLTQAFQEY 241
            GR ++VNF + P+  E              Y ++ +K++ GNL W++TS+ L  AF + 
Sbjct: 194 GGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLKDAFGDQ 253

Query: 242 GNVIGARVIYNGETGKSRGYGFVSYSTKSEMETALEALNEVELEGRVIRVSLAEGKQAQG 294
             V+GA+VIY   TG+SRG+GF+S+ +   +++AL  +N VE+EGR +R++LA  ++   
Sbjct: 254 PGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNLASEREKPT 313

The following BLAST results are available for this feature:

BLAST of Clc05G04850 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004134038.1	1.1e-131	88.97	28 kDa ribonucleoprotein, chloroplastic [Cucumis sativus] >KGN56810.1 hypothetic...	[more]
XP_016898952.1	1.0e-129	91.51	PREDICTED: LOW QUALITY PROTEIN: putative G3BP-like protein [Cucumis melo]	[more]
XP_022157973.1	3.0e-126	85.61	28 kDa ribonucleoprotein, chloroplastic [Momordica charantia]	[more]
KAA0049207.1	1.2e-125	86.22	putative G3BP-like protein [Cucumis melo var. makuwa] >TYK17351.1 putative G3BP-...	[more]
XP_022979333.1	2.6e-125	87.73	putative G3BP-like protein [Cucurbita maxima]	[more]

BLAST of Clc05G04850 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P28644	2.5e-38	43.46	28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=1	[more]
P19684	4.7e-37	35.31	33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
P19683	6.1e-37	39.44	31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
Q9FGS0	2.3e-36	37.22	RNA-binding protein CP31B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31...	[more]
Q08935	8.8e-36	40.59	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 S...	[more]

BLAST of Clc05G04850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L496	5.2e-132	88.97	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134590 PE=4 SV=1	[more]
A0A1S4DSH7	4.9e-130	91.51	LOW QUALITY PROTEIN: putative G3BP-like protein OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1DUT6	1.5e-126	85.61	28 kDa ribonucleoprotein, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A5D3CZH4	5.6e-126	86.22	Putative G3BP-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A6J1IVW4	1.2e-125	87.73	putative G3BP-like protein OS=Cucurbita maxima OX=3661 GN=LOC111479089 PE=4 SV=1	[more]

BLAST of Clc05G04850 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G60000.1	6.0e-72	61.09	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G50250.1	1.6e-37	37.22	chloroplast RNA-binding protein 31B	[more]
AT2G37220.1	1.2e-35	37.96	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G24770.1	2.0e-35	40.48	31-kDa RNA binding protein	[more]
AT3G52380.1	1.3e-34	34.19	chloroplast RNA-binding protein 33	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 109..182 e-value: 4.8E-21 score: 85.9 coord: 200..273 e-value: 2.3E-27 score: 106.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 201..271 e-value: 4.7E-21 score: 74.4 coord: 110..179 e-value: 1.4E-14 score: 53.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 199..277 score: 20.201155
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 108..186 score: 17.165293
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 72..188 e-value: 2.2E-24 score: 88.2
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 189..294 e-value: 1.1E-28 score: 101.9
None	No IPR available	PANTHER	PTHR15241:SF321	31 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC	coord: 86..147
None	No IPR available	PANTHER	PTHR15241:SF321	31 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC	coord: 144..184 coord: 190..279
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 86..147 coord: 190..279
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 144..184
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 192..283
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 103..191

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc05G04850.1	Clc05G04850.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1901259	chloroplast rRNA processing
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding