Clc05G04540 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc05G04540
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	GDT1 family protein
Location	ClcChr05: 3324704 .. 3328371 (+)
RNA-Seq Expression	Clc05G04540
Synteny	Clc05G04540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGGATTGGTGGTTCGCTCGCCGTTCGTTTCAACAGGGAAGAAGCTTCCCTTCTCGCCTTTGCTTGATTCTTTGCCCAGTTGTTCTGCTTCTGGCAGTGCATTTTCTAAGACGATATTAACATCGCGTAATTTTCTCTGTTTCTGTCTAAGTATCTGGTTTTGGTTTTTGATTTAGAAATTTTCAAATGCTGTGAGTTTGTATAAGTAGATTAGTTACTCATTGACCATTGTTTAGTGAAATTGATTGTTTGAGAGCCTATTCGAGTAATTTACGGATGATTCTTTTGTTGGATAACTTAATTTTGTCGAATTGATATGCGCATTCTGTGAACATATGAGTGAGTGATGAGTATGTTGCTTACAGTGAAACATAGAAGAGTGACGAGATTGAACGGGACGTGTGGTAAAATCAGAGCACATTCTTCCAATGTAAGCATCGGATCCGATGGATACAAGCACGAGGAGGAAAAGGAGGGCCAGCATGTTGTTTCCAGTAGTGCACCTGTTGATATCAATTCATCTAAAACGTGAGTTACTATGTTTTTGTTATGATTATCTGAGTTGAAAAGGAAACTTATTGATGTTGTATTGAATTTTGTTTCTGTGACTATGGCTAGGGTAATGCACTATATGCTTTTATTTTACAATTCCTTTTCCGGTGCAATGGTTAAAGAATCCAACGTATTTATTCATTTTCATTTAAAATGAAAATTCTATTAAAATGGTTTCTGGGATTTCTATTCCATTAGATATATTTACGGAGTTTTGTGTAGTAAACAGTGAATTTGACCCGTAATCATGCTAATTGCTTCACTGAGTTGGTGTAGTCAACGACAACTTCAAGAATTTTCCGTGTAAAACTGATTTTATCGCTTTTCTTCGTAATTTAGTGAATCCAGGATGCATTTGGTTTTCATAGGAACCAATATCTCTTCTTCTTCCTCACTCATTTATAAATCTTCTATGTTTTGGCAGTGAGAAATCTCCAAATGGATTGCCTTACCCTCTTTCTATTGCGCTAGTACTAATTGGATGTGGTTTAGTATTCTCGCTGATTGCCTTTGTGAAGGGAGGACCTTCATCAATCTTGGCTGCAGTTGCAAAGTCAGGGTTCACTGCTGCCTTCTCATTAATATTTGTCTCTGAAATTGGAGACAAGGTGACTTTTTTTTCATTGGAACTTCGTCTATATTAAACCTGAGATTTTTTCAATTTTGTCCAGATTCTAAATTTTGGCTATTAGTAGAAGGATTTTACATAACCATATAATTTATGGCAGAAAATATAAATAAATAATTTTTTTTAAATAACTAAGATATGCGACTGATCCACTGAGACAGGAAAGCTTGAAAAGTGACCTTGTTCAACCACATTACAATTCAGAGAATTTCAAGTGGAATAACCAAAATATTAAAAAAATTCAAAATTTTTAGGGTTTTTATGGCTCAACTTCCTTGTTTAGCATCTTTAGTGTCTTGCCCTCGTAGAATTAAGAAGGCAACTTCAGCTTATACCTTCTCTTTTGGACAGACGTTTTTCATTGCTGCACTCTTGGCCATGCAATATAAGAAAGGACTGGTATATCCCCTCTCAGCTTCACTTTCTCTCTCTCGCATTTTGTTCTGTGTTTTCTTTTCATTTTTCCCTTTTCCTTTTGTTCCATATGACTTGGTTAGGAATTGAAAGTTCTATTCAGGTATTGAATTGTTCAACAGGTTCTGTTAGGATCTATGGGAGCACTTTCACTCATGACAGTCCTCTCAGTTATAATTGGACGGATATTTCACTCAGTACCTGCTCAGTTCCAGACAAGTAAGCTGAAGATGTTTGGACTTTCTCAGCTGGTCTAGAATTTACTTCAATTTCGACTTTAACTAGTAACAAGAGAATGTTGCTTTGTATAATGTAGTTTATTCTTTCTGCAATTTATAGCTACATAACAGAAATGCTAGTGTAGCTTACGTTTTACACAACTTATGAATAACCTTTTTTTTTTTTTTGGGTTGCTCAAACATCTGTTTGATGGCTTTTAATCTCTTTGAACGTACTGTGTCTTCTTGCTTCTTTTTCTGTTAGGACAATAACTTTGGCCCTTCATTCCCTATATTGTGGCAGATATGATTCTGCTGAGACAGTCAGCAACTTAATCCATGTGCTTTATATATATTATTGGCTTTATTGTTTGAACTAGTGACTTTTGTTTGATTAAAAATGCAATTCTATGTTTGATAGTTTCTATCATAACCAATAATACTGCTCCTAGGCAGAGTTTACTTTAGGTCCATGATGCTAACGATATTTACTCTGTCATTCGTGTAGCTTTACCAATCGGAGAATATGCAGCAGTAACTCTTCTATTGTTCTTTGGTCTCAAGTCCATTAAAGATGCATGGGATCTTCCCTCGAGTGTTCCTAAACAAGGTGATGAGAGTGGCCCAGAACTTGATGAATATGTCGAAGCAGAGGAGCTTGTTAAAGAAAAGGTAGGTCCCCAATTAATAGTTTCCTCTAGGTTCGGAACTTCGTTTTGATACGGCTCTATTACAAAAACCCTTTATAATTGTTTTCAGGTTTCAAAACGGCTCTCCAATCCACTTGAAATCATTTGGAAGTCGTTCAGCCTTATATTTTTCGCCGTGAGTAATCTTTAATCATTACTATTTCAGCGGAAATGGATAACAAAGCAGAATACTTTAAAATGACATCGTGAAAAAATCACAACAAAGTTTGTTGAGTAGCTTTAAATCGCAAAATCCGGACTTGGTAATTTCATAACCTATAATATTTCATCAGCAATTAAATTAAAAGATTATGTTAGGCATGCCTTCTCGCAATCAAATTTGCATCACATTCGTAAATTCGACCTGAATAAAACATGTTCAGTTCATCAATTTGTGGGCATCTAAAACTCTTTATGATTTTAACGAGTGTGTGTTTGCATTGAAAAAAGATTCATGTGCAAGTACTCAAAGTTTGAAACATTATGTTGATATTAGGAATGGGGTGATCGCTCAATGCTTGCAACCATTGCTCTTGGAGCTGCGCAGGTTTGATTTTCTGTATTTAAAAGCCTGTGCAATTCATTCTCTCTCCTTTTTTTTTCTCCTCATTTTCATTTCAATTTTCAATCATATATTTCTCTTTGGTACAGTCTCCATGGGGGGTGGCGACGGGAGCTATCACTGGACACCTAATTGCAACTACCATTGCCATTCTAGGAGGAGCATTACTTGCCAACTACATTTCTGAAAAACTGGTAAGACACTTTTGGAAGTGATTTTGAAATGATTAAAATTACTTTTATCTTTTTCAAAATCACTCAAAATCATGCTTTTAATCATTCAAACCCAATTTTGACGATATGAAAATTGTATTTAAAATGTAAAATTAAATATTAAATTGATTTTGAATGATTAGAGGCGTGCTTCAAAAAAAAAGTGATTTTAACAATTTCAAAATCGCTTCTAATTGTTAGATGATATAATATTAAATTTGCCTTCACCTACTAGTTTAAGTTTTTGAGTCAATCGGCGAACAACACTCAAGTCTCTTTTTCCCTTAATCACTAATGCAACAACTCACTTCACCTTCTATCAGGTTGGCTACTTGGGCGGTGTACTCTTCTTAATTTTTGCAATAGCAACGTTTTTTGGAGTTTTCTGA

mRNA sequence

ATGGAAGGATTGGTGGTTCGCTCGCCGTTCGTTTCAACAGGGAAGAAGCTTCCCTTCTCGCCTTTGCTTGATTCTTTGCCCAGTTGTTCTGCTTCTGGCAGTGCATTTTCTAAGACGATATTAACATCGCTGAAACATAGAAGAGTGACGAGATTGAACGGGACGTGTGGTAAAATCAGAGCACATTCTTCCAATGTAAGCATCGGATCCGATGGATACAAGCACGAGGAGGAAAAGGAGGGCCAGCATGTTGTTTCCAGTAGTGCACCTGTTGATATCAATTCATCTAAAACTGAGAAATCTCCAAATGGATTGCCTTACCCTCTTTCTATTGCGCTAGTACTAATTGGATGTGGTTTAGTATTCTCGCTGATTGCCTTTGTGAAGGGAGGACCTTCATCAATCTTGGCTGCAGTTGCAAAGTCAGGGTTCACTGCTGCCTTCTCATTAATATTTGTCTCTGAAATTGGAGACAAGACGTTTTTCATTGCTGCACTCTTGGCCATGCAATATAAGAAAGGACTGGTTCTGTTAGGATCTATGGGAGCACTTTCACTCATGACAGTCCTCTCAGTTATAATTGGACGGATATTTCACTCAGTACCTGCTCAGTTCCAGACAACTTTACCAATCGGAGAATATGCAGCAGTAACTCTTCTATTGTTCTTTGGTCTCAAGTCCATTAAAGATGCATGGGATCTTCCCTCGAGTGTTCCTAAACAAGGTGATGAGAGTGGCCCAGAACTTGATGAATATGTCGAAGCAGAGGAGCTTGTTAAAGAAAAGGTTTCAAAACGGCTCTCCAATCCACTTGAAATCATTTGGAAGTCGTTCAGCCTTATATTTTTCGCCGAATGGGGTGATCGCTCAATGCTTGCAACCATTGCTCTTGGAGCTGCGCAGTCTCCATGGGGGGTGGCGACGGGAGCTATCACTGGACACCTAATTGCAACTACCATTGCCATTCTAGGAGGAGCATTACTTGCCAACTACATTTCTGAAAAACTGGTTGGCTACTTGGGCGGTGTACTCTTCTTAATTTTTGCAATAGCAACGTTTTTTGGAGTTTTCTGA

Coding sequence (CDS)

ATGGAAGGATTGGTGGTTCGCTCGCCGTTCGTTTCAACAGGGAAGAAGCTTCCCTTCTCGCCTTTGCTTGATTCTTTGCCCAGTTGTTCTGCTTCTGGCAGTGCATTTTCTAAGACGATATTAACATCGCTGAAACATAGAAGAGTGACGAGATTGAACGGGACGTGTGGTAAAATCAGAGCACATTCTTCCAATGTAAGCATCGGATCCGATGGATACAAGCACGAGGAGGAAAAGGAGGGCCAGCATGTTGTTTCCAGTAGTGCACCTGTTGATATCAATTCATCTAAAACTGAGAAATCTCCAAATGGATTGCCTTACCCTCTTTCTATTGCGCTAGTACTAATTGGATGTGGTTTAGTATTCTCGCTGATTGCCTTTGTGAAGGGAGGACCTTCATCAATCTTGGCTGCAGTTGCAAAGTCAGGGTTCACTGCTGCCTTCTCATTAATATTTGTCTCTGAAATTGGAGACAAGACGTTTTTCATTGCTGCACTCTTGGCCATGCAATATAAGAAAGGACTGGTTCTGTTAGGATCTATGGGAGCACTTTCACTCATGACAGTCCTCTCAGTTATAATTGGACGGATATTTCACTCAGTACCTGCTCAGTTCCAGACAACTTTACCAATCGGAGAATATGCAGCAGTAACTCTTCTATTGTTCTTTGGTCTCAAGTCCATTAAAGATGCATGGGATCTTCCCTCGAGTGTTCCTAAACAAGGTGATGAGAGTGGCCCAGAACTTGATGAATATGTCGAAGCAGAGGAGCTTGTTAAAGAAAAGGTTTCAAAACGGCTCTCCAATCCACTTGAAATCATTTGGAAGTCGTTCAGCCTTATATTTTTCGCCGAATGGGGTGATCGCTCAATGCTTGCAACCATTGCTCTTGGAGCTGCGCAGTCTCCATGGGGGGTGGCGACGGGAGCTATCACTGGACACCTAATTGCAACTACCATTGCCATTCTAGGAGGAGCATTACTTGCCAACTACATTTCTGAAAAACTGGTTGGCTACTTGGGCGGTGTACTCTTCTTAATTTTTGCAATAGCAACGTTTTTTGGAGTTTTCTGA

Protein sequence

MEGLVVRSPFVSTGKKLPFSPLLDSLPSCSASGSAFSKTILTSLKHRRVTRLNGTCGKIRAHSSNVSIGSDGYKHEEEKEGQHVVSSSAPVDINSSKTEKSPNGLPYPLSIALVLIGCGLVFSLIAFVKGGPSSILAAVAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYKKGLVLLGSMGALSLMTVLSVIIGRIFHSVPAQFQTTLPIGEYAAVTLLLFFGLKSIKDAWDLPSSVPKQGDESGPELDEYVEAEELVKEKVSKRLSNPLEIIWKSFSLIFFAEWGDRSMLATIALGAAQSPWGVATGAITGHLIATTIAILGGALLANYISEKLVGYLGGVLFLIFAIATFFGVF

Homology

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BLAST of Clc05G04540 vs. NCBI nr
Match: XP_038900282.1 (protein PAM71-homolog, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 642.1 bits (1655), Expect = 2.8e-180
Identity = 344/357 (96.36%), Postives = 348/357 (97.48%), Query Frame = 0


Query: 1   MEGLVVRSPFVSTGKKLPFSPLLDSLPSCSASGSAFSKTILTSLKHRRVTRLNGTCGKIR 60
           MEGLVVRSPFVSTGKKLPFSPLLDSLP  SASG  F+KT+ TSLK RRVTRLNGT GKIR
Sbjct: 1   MEGLVVRSPFVSTGKKLPFSPLLDSLPCRSASGGIFAKTVPTSLKRRRVTRLNGTYGKIR 60

Query: 61  AHSSNVSIGSDGYKHEEEKEGQHVVSSSAPVDINSSKTEKSPNGLPYPLSIALVLIGCGL 120
           AHSSNVSIGSDGYKHEEEKEGQHVVSSSAPVDI+SSKTEKSP GLPYPLSIALVLIGCGL
Sbjct: 61  AHSSNVSIGSDGYKHEEEKEGQHVVSSSAPVDISSSKTEKSPKGLPYPLSIALVLIGCGL 120

Query: 121 VFSLIAFVKGGPSSILAAVAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYKKGLVLLGS 180
           VFSLIAFVKGGPSSILAAVAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYKKGLVLLGS
Sbjct: 121 VFSLIAFVKGGPSSILAAVAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYKKGLVLLGS 180

Query: 181 MGALSLMTVLSVIIGRIFHSVPAQFQTTLPIGEYAAVTLLLFFGLKSIKDAWDLPSSVPK 240
           MGALSLMTVLSVIIGRIFHSVPAQFQTTLPIGEYAAVTLLLFFGLKSIKDAWDLPSS+PK
Sbjct: 181 MGALSLMTVLSVIIGRIFHSVPAQFQTTLPIGEYAAVTLLLFFGLKSIKDAWDLPSSIPK 240

Query: 241 QGDESGPELDEYVEAEELVKEKVSKRLSNPLEIIWKSFSLIFFAEWGDRSMLATIALGAA 300
           QGDESGPELDEYVEAEELVKEKVSKRLSNPLEIIWKSFSLIFFAEWGDRSMLATIALGAA
Sbjct: 241 QGDESGPELDEYVEAEELVKEKVSKRLSNPLEIIWKSFSLIFFAEWGDRSMLATIALGAA 300

Query: 301 QSPWGVATGAITGHLIATTIAILGGALLANYISEKLVGYLGGVLFLIFAIATFFGVF 358
           QSPWGVATGAITGHLIATTIAILGGA LANYISEKLVGYLGGVLFLIFAIATFFGVF
Sbjct: 301 QSPWGVATGAITGHLIATTIAILGGAFLANYISEKLVGYLGGVLFLIFAIATFFGVF 357

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BLAST of Clc05G04540 vs. NCBI nr
Match: XP_008438406.1 (PREDICTED: GDT1-like protein 2, chloroplastic [Cucumis melo])

HSP 1 Score: 630.6 bits (1625), Expect = 8.5e-177
Identity = 339/357 (94.96%), Postives = 346/357 (96.92%), Query Frame = 0


Query: 1   MEGLVVRSPFVSTGKKLPFSPLLDSLPSCSASGSAFSKTILTSLKHRRVTRLNGTCGKIR 60
           MEGLVVRSPFVSTGKKLPFSPLLDSLPSCSASGS FSKT+ TSLK  RVT L+ T GKIR
Sbjct: 1   MEGLVVRSPFVSTGKKLPFSPLLDSLPSCSASGSVFSKTVSTSLKRTRVTSLSRTYGKIR 60

Query: 61  AHSSNVSIGSDGYKHEEEKEGQHVVSSSAPVDINSSKTEKSPNGLPYPLSIALVLIGCGL 120
           AHSSNVSIGSDGYKHEEEKEG HV+S SAP DI+SSKTEKSP+GLPYPLSIALVLIGCGL
Sbjct: 61  AHSSNVSIGSDGYKHEEEKEGHHVISGSAP-DISSSKTEKSPSGLPYPLSIALVLIGCGL 120

Query: 121 VFSLIAFVKGGPSSILAAVAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYKKGLVLLGS 180
           VFSLIAFVKGGPSSILAAVAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQY+KGLVLLGS
Sbjct: 121 VFSLIAFVKGGPSSILAAVAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYEKGLVLLGS 180

Query: 181 MGALSLMTVLSVIIGRIFHSVPAQFQTTLPIGEYAAVTLLLFFGLKSIKDAWDLPSSVPK 240
           MGALSLMT LSVIIGRIFHSVPAQFQTTLPIGEYAAVTLLLFFGLK+IKDAWDLPSSVPK
Sbjct: 181 MGALSLMTALSVIIGRIFHSVPAQFQTTLPIGEYAAVTLLLFFGLKAIKDAWDLPSSVPK 240

Query: 241 QGDESGPELDEYVEAEELVKEKVSKRLSNPLEIIWKSFSLIFFAEWGDRSMLATIALGAA 300
           QGDESGPELDEYVEAEELVKEKVSKRLSNPLEIIWKSFSLIFFAEWGDRSMLATIALGAA
Sbjct: 241 QGDESGPELDEYVEAEELVKEKVSKRLSNPLEIIWKSFSLIFFAEWGDRSMLATIALGAA 300

Query: 301 QSPWGVATGAITGHLIATTIAILGGALLANYISEKLVGYLGGVLFLIFAIATFFGVF 358
           QSPWGVATGAITGHLIATTIAILGGALLANYISEKLVGYLGGVLFLIFAIATFFGVF
Sbjct: 301 QSPWGVATGAITGHLIATTIAILGGALLANYISEKLVGYLGGVLFLIFAIATFFGVF 356

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BLAST of Clc05G04540 vs. NCBI nr
Match: XP_011650895.1 (protein PAM71-homolog, chloroplastic [Cucumis sativus])

HSP 1 Score: 625.5 bits (1612), Expect = 2.7e-175
Identity = 336/357 (94.12%), Postives = 345/357 (96.64%), Query Frame = 0


Query: 1   MEGLVVRSPFVSTGKKLPFSPLLDSLPSCSASGSAFSKTILTSLKHRRVTRLNGTCGKIR 60
           MEGLVVRSPFVSTGKKLPFSPLLDSLPSCSASG  FS+T+ TSLKHRRVTRL+ T GK R
Sbjct: 1   MEGLVVRSPFVSTGKKLPFSPLLDSLPSCSASGGVFSRTVSTSLKHRRVTRLSRTYGKSR 60

Query: 61  AHSSNVSIGSDGYKHEEEKEGQHVVSSSAPVDINSSKTEKSPNGLPYPLSIALVLIGCGL 120
           AHSSNVSIGSDGYKHEEEKEG HV+S SA  DI+SSKTEKSP+GLPYPLSIALVLIGCGL
Sbjct: 61  AHSSNVSIGSDGYKHEEEKEGHHVISGSAS-DISSSKTEKSPSGLPYPLSIALVLIGCGL 120

Query: 121 VFSLIAFVKGGPSSILAAVAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYKKGLVLLGS 180
           VFSLIAFVKGGPSSILAAVAKSGFTAAFSLIF+SEIGDKTFFIAALLAMQY+KGLVLLGS
Sbjct: 121 VFSLIAFVKGGPSSILAAVAKSGFTAAFSLIFISEIGDKTFFIAALLAMQYEKGLVLLGS 180

Query: 181 MGALSLMTVLSVIIGRIFHSVPAQFQTTLPIGEYAAVTLLLFFGLKSIKDAWDLPSSVPK 240
           MGALSLMTVLSVIIGRIFHSVPAQFQTTLPIGEYAAVTLLLFFGLK+IKDAWDLPSSV K
Sbjct: 181 MGALSLMTVLSVIIGRIFHSVPAQFQTTLPIGEYAAVTLLLFFGLKAIKDAWDLPSSVHK 240

Query: 241 QGDESGPELDEYVEAEELVKEKVSKRLSNPLEIIWKSFSLIFFAEWGDRSMLATIALGAA 300
           QGDESGPELDEYVEAEELVKEKVSKRLSNPLEIIWKSFSLIFFAEWGDRSMLATIALGAA
Sbjct: 241 QGDESGPELDEYVEAEELVKEKVSKRLSNPLEIIWKSFSLIFFAEWGDRSMLATIALGAA 300

Query: 301 QSPWGVATGAITGHLIATTIAILGGALLANYISEKLVGYLGGVLFLIFAIATFFGVF 358
           QSPWGVATGAITGHLIATTIAILGGALLA YISEKLVGYLGGVLFLIFAIATFFGVF
Sbjct: 301 QSPWGVATGAITGHLIATTIAILGGALLAKYISEKLVGYLGGVLFLIFAIATFFGVF 356

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BLAST of Clc05G04540 vs. NCBI nr
Match: XP_023521675.1 (protein PAM71-homolog, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023539860.1 protein PAM71-homolog, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 624.0 bits (1608), Expect = 7.9e-175
Identity = 337/357 (94.40%), Postives = 345/357 (96.64%), Query Frame = 0


Query: 1   MEGLVVRSPFVSTGKKLPFSPLLDSLPSCSASGSAFSKTILTSLKHRRVTRLNGTCGKIR 60
           MEGLVVRSPFVSTGKKLPFSPLLDSLPSCSASGS F+KT+  SLK RRVTRLN   GKIR
Sbjct: 1   MEGLVVRSPFVSTGKKLPFSPLLDSLPSCSASGSVFAKTVSKSLKCRRVTRLNTKYGKIR 60

Query: 61  AHSSNVSIGSDGYKHEEEKEGQHVVSSSAPVDINSSKTEKSPNGLPYPLSIALVLIGCGL 120
           AHSSNVSIGSDGYKHEEEKEGQHV+SSSAP D +SSKTEKSPNGLPYPLSIALVLIGC L
Sbjct: 61  AHSSNVSIGSDGYKHEEEKEGQHVISSSAPGD-SSSKTEKSPNGLPYPLSIALVLIGCSL 120

Query: 121 VFSLIAFVKGGPSSILAAVAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYKKGLVLLGS 180
           VFSLIAFVKGGPSSILAAVAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYKKGLVLLGS
Sbjct: 121 VFSLIAFVKGGPSSILAAVAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYKKGLVLLGS 180

Query: 181 MGALSLMTVLSVIIGRIFHSVPAQFQTTLPIGEYAAVTLLLFFGLKSIKDAWDLPSSVPK 240
           MGALSLMTVLSVIIGRIFHSVPAQFQTTLPIGEYAAVTLLLFFGLKSIKDAW+LPSSVPK
Sbjct: 181 MGALSLMTVLSVIIGRIFHSVPAQFQTTLPIGEYAAVTLLLFFGLKSIKDAWELPSSVPK 240

Query: 241 QGDESGPELDEYVEAEELVKEKVSKRLSNPLEIIWKSFSLIFFAEWGDRSMLATIALGAA 300
           Q +ES PELDEYVEAEELVKEKVSKRLSNPLEIIWKSFSLIFFAEWGDRSMLATIALGAA
Sbjct: 241 QDNESPPELDEYVEAEELVKEKVSKRLSNPLEIIWKSFSLIFFAEWGDRSMLATIALGAA 300

Query: 301 QSPWGVATGAITGHLIATTIAILGGALLANYISEKLVGYLGGVLFLIFAIATFFGVF 358
           QSPWGVATGAITGHLIATTIAILGGALLANYISEKLVGY+GGVLFLIFA+ATFFGVF
Sbjct: 301 QSPWGVATGAITGHLIATTIAILGGALLANYISEKLVGYVGGVLFLIFAVATFFGVF 356

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BLAST of Clc05G04540 vs. NCBI nr
Match: XP_038900287.1 (protein PAM71-homolog, chloroplastic isoform X2 [Benincasa hispida])

HSP 1 Score: 624.0 bits (1608), Expect = 7.9e-175
Identity = 338/357 (94.68%), Postives = 341/357 (95.52%), Query Frame = 0


Query: 1   MEGLVVRSPFVSTGKKLPFSPLLDSLPSCSASGSAFSKTILTSLKHRRVTRLNGTCGKIR 60
           MEGLVVRSPFVSTGKKLPFSPLLDSLP  SASG          +K RRVTRLNGT GKIR
Sbjct: 1   MEGLVVRSPFVSTGKKLPFSPLLDSLPCRSASG----------VKRRRVTRLNGTYGKIR 60

Query: 61  AHSSNVSIGSDGYKHEEEKEGQHVVSSSAPVDINSSKTEKSPNGLPYPLSIALVLIGCGL 120
           AHSSNVSIGSDGYKHEEEKEGQHVVSSSAPVDI+SSKTEKSP GLPYPLSIALVLIGCGL
Sbjct: 61  AHSSNVSIGSDGYKHEEEKEGQHVVSSSAPVDISSSKTEKSPKGLPYPLSIALVLIGCGL 120

Query: 121 VFSLIAFVKGGPSSILAAVAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYKKGLVLLGS 180
           VFSLIAFVKGGPSSILAAVAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYKKGLVLLGS
Sbjct: 121 VFSLIAFVKGGPSSILAAVAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYKKGLVLLGS 180

Query: 181 MGALSLMTVLSVIIGRIFHSVPAQFQTTLPIGEYAAVTLLLFFGLKSIKDAWDLPSSVPK 240
           MGALSLMTVLSVIIGRIFHSVPAQFQTTLPIGEYAAVTLLLFFGLKSIKDAWDLPSS+PK
Sbjct: 181 MGALSLMTVLSVIIGRIFHSVPAQFQTTLPIGEYAAVTLLLFFGLKSIKDAWDLPSSIPK 240

Query: 241 QGDESGPELDEYVEAEELVKEKVSKRLSNPLEIIWKSFSLIFFAEWGDRSMLATIALGAA 300
           QGDESGPELDEYVEAEELVKEKVSKRLSNPLEIIWKSFSLIFFAEWGDRSMLATIALGAA
Sbjct: 241 QGDESGPELDEYVEAEELVKEKVSKRLSNPLEIIWKSFSLIFFAEWGDRSMLATIALGAA 300

Query: 301 QSPWGVATGAITGHLIATTIAILGGALLANYISEKLVGYLGGVLFLIFAIATFFGVF 358
           QSPWGVATGAITGHLIATTIAILGGA LANYISEKLVGYLGGVLFLIFAIATFFGVF
Sbjct: 301 QSPWGVATGAITGHLIATTIAILGGAFLANYISEKLVGYLGGVLFLIFAIATFFGVF 347

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BLAST of Clc05G04540 vs. ExPASy Swiss-Prot
Match: Q9T0H9 (Protein PAM71-homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAM71-HL PE=1 SV=2)

HSP 1 Score: 426.8 bits (1096), Expect = 2.4e-118
Identity = 239/347 (68.88%), Postives = 274/347 (78.96%), Query Frame = 0


Query: 11  VSTGKKLPFSPLLDSLPSCSASGSAFSKTILTSLKHRRVTRLNGTCGKIRAHSSNVSIGS 70
           VS+ +KLPF  L ++LP   +S     K     L+ RR  +L+   GK R  +S+  +GS
Sbjct: 19  VSSIQKLPFLSLSETLPCPKSS----RKPTFLPLRCRRRPKLDLLWGKFRVRASDAGVGS 78

Query: 71  DGYKHEEEKEGQHVVSSSAPVDINSSKTEKSPNGLPYPLSIALVLIGCGLVFSLIAFVKG 130
             Y   EE   Q      +P    SS++ K     PY LSIALVL+ CGLVFSLI FVKG
Sbjct: 79  GSYSGGEEDGSQSSSLDQSPA--TSSESLKPRGPFPYSLSIALVLLSCGLVFSLITFVKG 138

Query: 131 GPSSILAAVAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYKKGLVLLGSMGALSLMTVL 190
           GPSS+LAAVAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQY+K LVLLGSMGALSLMT+L
Sbjct: 139 GPSSVLAAVAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYEKTLVLLGSMGALSLMTIL 198

Query: 191 SVIIGRIFHSVPAQFQTTLPIGEYAAVTLLLFFGLKSIKDAWDLPSSVPKQGDESGPELD 250
           SV+IG+IF SVPAQFQTTLPIGEYAA+ LL+FFGLKSIKDAWDLP    K G+E+G EL 
Sbjct: 199 SVVIGKIFQSVPAQFQTTLPIGEYAAIALLMFFGLKSIKDAWDLPPVEAKNGEETGIELG 258

Query: 251 EYVEAEELVKEKVSKRLSNPLEIIWKSFSLIFFAEWGDRSMLATIALGAAQSPWGVATGA 310
           EY EAEELVKEK SK+L+NPLEI+WKSFSL+FFAEWGDRSMLAT+ALGAAQSP GVA+GA
Sbjct: 259 EYSEAEELVKEKASKKLTNPLEILWKSFSLVFFAEWGDRSMLATVALGAAQSPLGVASGA 318

Query: 311 ITGHLIATTIAILGGALLANYISEKLVGYLGGVLFLIFAIATFFGVF 358
           I GHL+AT +AI+GGA LANYISEKLVGY+GG LFL+FA ATFFGVF
Sbjct: 319 IAGHLVATVLAIMGGAFLANYISEKLVGYVGGALFLVFAAATFFGVF 359

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BLAST of Clc05G04540 vs. ExPASy Swiss-Prot
Match: Q2R2Z4 (GDT1-like protein 2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0544500 PE=2 SV=1)

HSP 1 Score: 367.5 bits (942), Expect = 1.8e-100
Identity = 203/301 (67.44%), Postives = 245/301 (81.40%), Query Frame = 0


Query: 59  IRAHSSNVSIGSDGYK-HEEEKEGQHVVSSSAPVDINSSKTEKSPNGLPYPLSIALVLIG 118
           +R  +SNV++G+  Y+  E    G+H+ SS+     +S+K  K P+G  YP SIA VL+ 
Sbjct: 52  VRVQTSNVNVGAGSYEGGEAGSHGEHLDSSATR---DSNKPTKPPSGSRYPQSIAAVLLL 111

Query: 119 CGLVFSLIAFVKGGPSSILAAVAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYKKGLVL 178
           C L  + I F KG PS+++A +AKSGFTAAF+LIFVSEIGDKTFFIAALLAMQY++ LVL
Sbjct: 112 CALASAFIVFFKGQPSAVVAMLAKSGFTAAFTLIFVSEIGDKTFFIAALLAMQYQRALVL 171

Query: 179 LGSMGALSLMTVLSVIIGRIFHSVPAQFQTTLPIGEYAAVTLLLFFGLKSIKDAWDLPSS 238
           LGSM ALSLMT++SVIIGRIF SVPAQFQTTLPIGEYAA+ LL FFG KSIKDAW LP +
Sbjct: 172 LGSMAALSLMTIVSVIIGRIFQSVPAQFQTTLPIGEYAAIALLAFFGFKSIKDAWQLPDN 231

Query: 239 VPKQGDESG-PELDEYVEAEELVKEKVSKRLSNPLEIIWKSFSLIFFAEWGDRSMLATIA 298
               G+  G  E  E  EAEELVKEKV+K+L++PLE++WKSFSL+FFAEWGDRSMLATIA
Sbjct: 232 A--NGNLQGNSESGELAEAEELVKEKVAKKLTSPLEVLWKSFSLVFFAEWGDRSMLATIA 291

Query: 299 LGAAQSPWGVATGAITGHLIATTIAILGGALLANYISEKLVGYLGGVLFLIFAIATFFGV 358
           LGAAQSP+GVA+GAI GHL+AT +AI+GGA LANY+SEKLVG +GGVLFL+FA+ATFFGV
Sbjct: 292 LGAAQSPFGVASGAIAGHLVATFLAIVGGAFLANYLSEKLVGLIGGVLFLLFAVATFFGV 347

[Close]

BLAST of Clc05G04540 vs. ExPASy Swiss-Prot
Match: Q94AX5 (Protein PAM71, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAM71 PE=1 SV=2)

HSP 1 Score: 168.3 bits (425), Expect = 1.6e-40
Identity = 104/218 (47.71%), Postives = 138/218 (63.30%), Query Frame = 0


Query: 142 SGFTAAFSLIFVSEIGDKTFFIAALLAMQYKKGLVLLGSMGALSLMTVLSVIIGRIFHSV 201
           SGF +AF LIF SE+GDKTFFIAALLA +     V +G+ GAL +MT++SV++GR FH V
Sbjct: 157 SGFASAFLLIFFSELGDKTFFIAALLAARNSAATVFVGTFGALGIMTIISVVLGRTFHYV 216

Query: 202 ----PAQF-QTTLPIGEYAAVTLLLFFGLKSIKDAWDLPSSVPKQGDESGPELDEYVEAE 261
               P +F  T LPI + AAV LL++FG+ ++ DA            + G   +E  EAE
Sbjct: 217 DEVLPFRFGGTDLPIDDIAAVCLLVYFGVSTLLDA----------VSDEGKADEEQKEAE 276

Query: 262 ELVKEKVSK--RLSNPLEIIWKSFSLIFFAEWGDRSMLATIALGAAQSPWGVATGAITGH 321
             V E       +      I  +F+L+F AEWGD+S  +TIAL AA SP GV  GA+ GH
Sbjct: 277 LAVSELSGNGAGIVAAANTIISTFALVFVAEWGDKSFFSTIALAAASSPLGVIAGALAGH 336

Query: 322 LIATTIAILGGALLANYISEKLVGYLGGVLFLIFAIAT 353
             AT +A+LGG+LL N++SEK + Y+GGVLFL+FA  T
Sbjct: 337 GAATLLAVLGGSLLGNFLSEKAIAYVGGVLFLVFAAVT 364

[Close]

BLAST of Clc05G04540 vs. ExPASy Swiss-Prot
Match: Q5NAY7 (GDT1-like protein 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0221700 PE=3 SV=2)

HSP 1 Score: 164.5 bits (415), Expect = 2.3e-39
Identity = 102/222 (45.95%), Postives = 141/222 (63.51%), Query Frame = 0


Query: 142 SGFTAAFSLIFVSEIGDKTFFIAALLAMQYKKGLVLLGSMGALSLMTVLSVIIGRIFHSV 201
           +GF +AF LIF SE+GD+TFFIAALLA +    ++ LG+ GAL++MT++SV++GR FH V
Sbjct: 126 TGFASAFLLIFFSELGDRTFFIAALLAARNSGAIIFLGTFGALAVMTIISVVLGRAFHYV 185

Query: 202 ----PAQF-QTTLPIGEYAAVTLLLFFGLKSIKDAWDLPSSVPKQGDESGPELDEYVEAE 261
               P  F  T  P+ ++ A  LL+++G+ ++ DA          GDE   +++E  E  
Sbjct: 186 DGIIPFSFGGTDFPVDDFLAACLLVYYGITTLLDA--------ASGDEE--KMNEEQEEA 245

Query: 262 ELVKEKVSKRLSNPLEI------IWKSFSLIFFAEWGDRSMLATIALGAAQSPWGVATGA 321
           EL    VSK L N   I      I  +F L+F AEWGD+S  +TIAL AA SP GV  G+
Sbjct: 246 ELA---VSKFLGNGAGIISAASTIASTFVLVFIAEWGDKSFFSTIALAAASSPLGVIAGS 305

Query: 322 ITGHLIATTIAILGGALLANYISEKLVGYLGGVLFLIFAIAT 353
           + GH +AT IA+LGG+LL  ++SEK+V Y+GG LFL FA  T
Sbjct: 306 LAGHAVATLIAVLGGSLLGTFLSEKIVAYIGGSLFLAFAAVT 334

[Close]

BLAST of Clc05G04540 vs. ExPASy Swiss-Prot
Match: B8AAM2 (GDT1-like protein 1, chloroplastic OS=Oryza sativa subsp. indica OX=39946 GN=OsI_00941 PE=3 SV=2)

HSP 1 Score: 164.1 bits (414), Expect = 2.9e-39
Identity = 102/222 (45.95%), Postives = 141/222 (63.51%), Query Frame = 0


Query: 142 SGFTAAFSLIFVSEIGDKTFFIAALLAMQYKKGLVLLGSMGALSLMTVLSVIIGRIFHSV 201
           +GF +AF LIF SE+GD+TFFIAALLA +    ++ LG+ GAL++MT++SV++GR FH V
Sbjct: 126 TGFASAFLLIFFSELGDRTFFIAALLAARNSGAIIFLGTFGALAVMTIISVVLGRAFHYV 185

Query: 202 ----PAQF-QTTLPIGEYAAVTLLLFFGLKSIKDAWDLPSSVPKQGDESGPELDEYVEAE 261
               P  F  T  P+ ++ A  LL+++G+ ++ DA          GDE   +++E  E  
Sbjct: 186 DGIIPFSFGGTDFPVDDFLAACLLVYYGVTTLLDA--------ASGDEE--KMNEEQEEA 245

Query: 262 ELVKEKVSKRLSNPLEI------IWKSFSLIFFAEWGDRSMLATIALGAAQSPWGVATGA 321
           EL    VSK L N   I      I  +F L+F AEWGD+S  +TIAL AA SP GV  G+
Sbjct: 246 ELA---VSKFLGNGAGIISAASTIASTFVLVFIAEWGDKSFFSTIALAAASSPLGVIAGS 305

Query: 322 ITGHLIATTIAILGGALLANYISEKLVGYLGGVLFLIFAIAT 353
           + GH +AT IA+LGG+LL  ++SEK+V Y+GG LFL FA  T
Sbjct: 306 LAGHAVATLIAVLGGSLLGTFLSEKIVAYIGGSLFLAFAAVT 334

[Close]

BLAST of Clc05G04540 vs. ExPASy TrEMBL
Match: A0A1S3AWY0 (GDT1 family protein OS=Cucumis melo OX=3656 GN=LOC103483513 PE=3 SV=1)

HSP 1 Score: 630.6 bits (1625), Expect = 4.1e-177
Identity = 339/357 (94.96%), Postives = 346/357 (96.92%), Query Frame = 0


Query: 1   MEGLVVRSPFVSTGKKLPFSPLLDSLPSCSASGSAFSKTILTSLKHRRVTRLNGTCGKIR 60
           MEGLVVRSPFVSTGKKLPFSPLLDSLPSCSASGS FSKT+ TSLK  RVT L+ T GKIR
Sbjct: 1   MEGLVVRSPFVSTGKKLPFSPLLDSLPSCSASGSVFSKTVSTSLKRTRVTSLSRTYGKIR 60

Query: 61  AHSSNVSIGSDGYKHEEEKEGQHVVSSSAPVDINSSKTEKSPNGLPYPLSIALVLIGCGL 120
           AHSSNVSIGSDGYKHEEEKEG HV+S SAP DI+SSKTEKSP+GLPYPLSIALVLIGCGL
Sbjct: 61  AHSSNVSIGSDGYKHEEEKEGHHVISGSAP-DISSSKTEKSPSGLPYPLSIALVLIGCGL 120

Query: 121 VFSLIAFVKGGPSSILAAVAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYKKGLVLLGS 180
           VFSLIAFVKGGPSSILAAVAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQY+KGLVLLGS
Sbjct: 121 VFSLIAFVKGGPSSILAAVAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYEKGLVLLGS 180

Query: 181 MGALSLMTVLSVIIGRIFHSVPAQFQTTLPIGEYAAVTLLLFFGLKSIKDAWDLPSSVPK 240
           MGALSLMT LSVIIGRIFHSVPAQFQTTLPIGEYAAVTLLLFFGLK+IKDAWDLPSSVPK
Sbjct: 181 MGALSLMTALSVIIGRIFHSVPAQFQTTLPIGEYAAVTLLLFFGLKAIKDAWDLPSSVPK 240

Query: 241 QGDESGPELDEYVEAEELVKEKVSKRLSNPLEIIWKSFSLIFFAEWGDRSMLATIALGAA 300
           QGDESGPELDEYVEAEELVKEKVSKRLSNPLEIIWKSFSLIFFAEWGDRSMLATIALGAA
Sbjct: 241 QGDESGPELDEYVEAEELVKEKVSKRLSNPLEIIWKSFSLIFFAEWGDRSMLATIALGAA 300

Query: 301 QSPWGVATGAITGHLIATTIAILGGALLANYISEKLVGYLGGVLFLIFAIATFFGVF 358
           QSPWGVATGAITGHLIATTIAILGGALLANYISEKLVGYLGGVLFLIFAIATFFGVF
Sbjct: 301 QSPWGVATGAITGHLIATTIAILGGALLANYISEKLVGYLGGVLFLIFAIATFFGVF 356

[Close]

BLAST of Clc05G04540 vs. ExPASy TrEMBL
Match: A0A0A0L826 (GDT1 family protein OS=Cucumis sativus OX=3659 GN=Csa_3G133280 PE=3 SV=1)

HSP 1 Score: 625.5 bits (1612), Expect = 1.3e-175
Identity = 336/357 (94.12%), Postives = 345/357 (96.64%), Query Frame = 0


Query: 1   MEGLVVRSPFVSTGKKLPFSPLLDSLPSCSASGSAFSKTILTSLKHRRVTRLNGTCGKIR 60
           MEGLVVRSPFVSTGKKLPFSPLLDSLPSCSASG  FS+T+ TSLKHRRVTRL+ T GK R
Sbjct: 1   MEGLVVRSPFVSTGKKLPFSPLLDSLPSCSASGGVFSRTVSTSLKHRRVTRLSRTYGKSR 60

Query: 61  AHSSNVSIGSDGYKHEEEKEGQHVVSSSAPVDINSSKTEKSPNGLPYPLSIALVLIGCGL 120
           AHSSNVSIGSDGYKHEEEKEG HV+S SA  DI+SSKTEKSP+GLPYPLSIALVLIGCGL
Sbjct: 61  AHSSNVSIGSDGYKHEEEKEGHHVISGSAS-DISSSKTEKSPSGLPYPLSIALVLIGCGL 120

Query: 121 VFSLIAFVKGGPSSILAAVAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYKKGLVLLGS 180
           VFSLIAFVKGGPSSILAAVAKSGFTAAFSLIF+SEIGDKTFFIAALLAMQY+KGLVLLGS
Sbjct: 121 VFSLIAFVKGGPSSILAAVAKSGFTAAFSLIFISEIGDKTFFIAALLAMQYEKGLVLLGS 180

Query: 181 MGALSLMTVLSVIIGRIFHSVPAQFQTTLPIGEYAAVTLLLFFGLKSIKDAWDLPSSVPK 240
           MGALSLMTVLSVIIGRIFHSVPAQFQTTLPIGEYAAVTLLLFFGLK+IKDAWDLPSSV K
Sbjct: 181 MGALSLMTVLSVIIGRIFHSVPAQFQTTLPIGEYAAVTLLLFFGLKAIKDAWDLPSSVHK 240

Query: 241 QGDESGPELDEYVEAEELVKEKVSKRLSNPLEIIWKSFSLIFFAEWGDRSMLATIALGAA 300
           QGDESGPELDEYVEAEELVKEKVSKRLSNPLEIIWKSFSLIFFAEWGDRSMLATIALGAA
Sbjct: 241 QGDESGPELDEYVEAEELVKEKVSKRLSNPLEIIWKSFSLIFFAEWGDRSMLATIALGAA 300

Query: 301 QSPWGVATGAITGHLIATTIAILGGALLANYISEKLVGYLGGVLFLIFAIATFFGVF 358
           QSPWGVATGAITGHLIATTIAILGGALLA YISEKLVGYLGGVLFLIFAIATFFGVF
Sbjct: 301 QSPWGVATGAITGHLIATTIAILGGALLAKYISEKLVGYLGGVLFLIFAIATFFGVF 356

[Close]

BLAST of Clc05G04540 vs. ExPASy TrEMBL
Match: A0A6J1IBK7 (GDT1 family protein OS=Cucurbita maxima OX=3661 GN=LOC111473197 PE=3 SV=1)

HSP 1 Score: 623.6 bits (1607), Expect = 5.0e-175
Identity = 336/357 (94.12%), Postives = 344/357 (96.36%), Query Frame = 0


Query: 1   MEGLVVRSPFVSTGKKLPFSPLLDSLPSCSASGSAFSKTILTSLKHRRVTRLNGTCGKIR 60
           MEGLVVRSPFVSTGKK PFSPLLDSLPSCSASGS F+KT+  SLK RRVTRLN   GKIR
Sbjct: 1   MEGLVVRSPFVSTGKKFPFSPLLDSLPSCSASGSVFAKTVSKSLKCRRVTRLNTKYGKIR 60

Query: 61  AHSSNVSIGSDGYKHEEEKEGQHVVSSSAPVDINSSKTEKSPNGLPYPLSIALVLIGCGL 120
           AHSSNVSIGSDGYKHEEEKEGQHV+SSSAP D +SSKTEKSPNGLPYPLSIALVLIGC L
Sbjct: 61  AHSSNVSIGSDGYKHEEEKEGQHVISSSAPAD-SSSKTEKSPNGLPYPLSIALVLIGCSL 120

Query: 121 VFSLIAFVKGGPSSILAAVAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYKKGLVLLGS 180
           VFSLIAFVKGGPSSILAAVAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYKKGLVLLGS
Sbjct: 121 VFSLIAFVKGGPSSILAAVAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYKKGLVLLGS 180

Query: 181 MGALSLMTVLSVIIGRIFHSVPAQFQTTLPIGEYAAVTLLLFFGLKSIKDAWDLPSSVPK 240
           MGALSLMTVLSVIIGRIFHSVPAQFQTTLPIGEYAAVTLLLFFGLKSIKDAW+LPSSVPK
Sbjct: 181 MGALSLMTVLSVIIGRIFHSVPAQFQTTLPIGEYAAVTLLLFFGLKSIKDAWELPSSVPK 240

Query: 241 QGDESGPELDEYVEAEELVKEKVSKRLSNPLEIIWKSFSLIFFAEWGDRSMLATIALGAA 300
           Q +ES PELDEYVEAEELVKEKVSKRLSNPLEIIWKSFSLIFFAEWGDRSMLATIALGAA
Sbjct: 241 QDNESPPELDEYVEAEELVKEKVSKRLSNPLEIIWKSFSLIFFAEWGDRSMLATIALGAA 300

Query: 301 QSPWGVATGAITGHLIATTIAILGGALLANYISEKLVGYLGGVLFLIFAIATFFGVF 358
           QSPWGVATGAITGHLIATTIAILGGALLANYISEKLVGY+GGVLFLIFA+ATFFGVF
Sbjct: 301 QSPWGVATGAITGHLIATTIAILGGALLANYISEKLVGYVGGVLFLIFAVATFFGVF 356

[Close]

BLAST of Clc05G04540 vs. ExPASy TrEMBL
Match: A0A6J1G9C7 (GDT1 family protein OS=Cucurbita moschata OX=3662 GN=LOC111452154 PE=3 SV=1)

HSP 1 Score: 623.6 bits (1607), Expect = 5.0e-175
Identity = 336/357 (94.12%), Postives = 344/357 (96.36%), Query Frame = 0


Query: 1   MEGLVVRSPFVSTGKKLPFSPLLDSLPSCSASGSAFSKTILTSLKHRRVTRLNGTCGKIR 60
           MEGLVVRSPFVSTGKKLPFSPLLDSLPSCSASGS F+KT+  SLK RRVTRLN   GKIR
Sbjct: 1   MEGLVVRSPFVSTGKKLPFSPLLDSLPSCSASGSVFAKTVSKSLKCRRVTRLNTKYGKIR 60

Query: 61  AHSSNVSIGSDGYKHEEEKEGQHVVSSSAPVDINSSKTEKSPNGLPYPLSIALVLIGCGL 120
           AHSSN SIGSDGYKHEEEKEGQHV+SSSAP D +SSKTEKSPNGLPYPLSIALVLIGC L
Sbjct: 61  AHSSNASIGSDGYKHEEEKEGQHVISSSAPAD-SSSKTEKSPNGLPYPLSIALVLIGCSL 120

Query: 121 VFSLIAFVKGGPSSILAAVAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYKKGLVLLGS 180
           VFSLIAFVKGGPSSILAAVAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYKKGLVLLGS
Sbjct: 121 VFSLIAFVKGGPSSILAAVAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYKKGLVLLGS 180

Query: 181 MGALSLMTVLSVIIGRIFHSVPAQFQTTLPIGEYAAVTLLLFFGLKSIKDAWDLPSSVPK 240
           MGALSLMTVLSVIIGRIFHSVPAQFQTTLPIGEYAAVTLLLFFGLKSIKDAW+LPSSVPK
Sbjct: 181 MGALSLMTVLSVIIGRIFHSVPAQFQTTLPIGEYAAVTLLLFFGLKSIKDAWELPSSVPK 240

Query: 241 QGDESGPELDEYVEAEELVKEKVSKRLSNPLEIIWKSFSLIFFAEWGDRSMLATIALGAA 300
           Q +ES PELDEYVEAEELVKEKVSKRLSNPLEIIWKSFSLIFFAEWGDRSMLATIALGAA
Sbjct: 241 QDNESPPELDEYVEAEELVKEKVSKRLSNPLEIIWKSFSLIFFAEWGDRSMLATIALGAA 300

Query: 301 QSPWGVATGAITGHLIATTIAILGGALLANYISEKLVGYLGGVLFLIFAIATFFGVF 358
           QSPWGVATGAITGHLIATTIAILGGALLANYISEKLVGY+GGVLFLIFA+ATFFGVF
Sbjct: 301 QSPWGVATGAITGHLIATTIAILGGALLANYISEKLVGYVGGVLFLIFAVATFFGVF 356

[Close]

BLAST of Clc05G04540 vs. ExPASy TrEMBL
Match: A0A6J1IBI9 (GDT1 family protein OS=Cucurbita maxima OX=3661 GN=LOC111473663 PE=3 SV=1)

HSP 1 Score: 621.7 bits (1602), Expect = 1.9e-174
Identity = 335/357 (93.84%), Postives = 343/357 (96.08%), Query Frame = 0


Query: 1   MEGLVVRSPFVSTGKKLPFSPLLDSLPSCSASGSAFSKTILTSLKHRRVTRLNGTCGKIR 60
           MEGLVVRSPFVSTGKK PFSPLLDSLPSCSASGS F+K +  SLK RRVTRLN   GKIR
Sbjct: 1   MEGLVVRSPFVSTGKKFPFSPLLDSLPSCSASGSVFAKNVSKSLKCRRVTRLNTKYGKIR 60

Query: 61  AHSSNVSIGSDGYKHEEEKEGQHVVSSSAPVDINSSKTEKSPNGLPYPLSIALVLIGCGL 120
           AHSSNVSIGSDGYKHEEEKEGQHV+SSSAP D +SSKTEKSPNGLPYPLSIALVLIGC L
Sbjct: 61  AHSSNVSIGSDGYKHEEEKEGQHVISSSAPAD-SSSKTEKSPNGLPYPLSIALVLIGCSL 120

Query: 121 VFSLIAFVKGGPSSILAAVAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYKKGLVLLGS 180
           VFSLIAFVKGGPSSILAAVAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYKKGLVLLGS
Sbjct: 121 VFSLIAFVKGGPSSILAAVAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYKKGLVLLGS 180

Query: 181 MGALSLMTVLSVIIGRIFHSVPAQFQTTLPIGEYAAVTLLLFFGLKSIKDAWDLPSSVPK 240
           MGALSLMTVLSVIIGRIFHSVPAQFQTTLPIGEYAAVTLLLFFGLKSIKDAW+LPSSVPK
Sbjct: 181 MGALSLMTVLSVIIGRIFHSVPAQFQTTLPIGEYAAVTLLLFFGLKSIKDAWELPSSVPK 240

Query: 241 QGDESGPELDEYVEAEELVKEKVSKRLSNPLEIIWKSFSLIFFAEWGDRSMLATIALGAA 300
           Q +ES PELDEYVEAEELVKEKVSKRLSNPLEIIWKSFSLIFFAEWGDRSMLATIALGAA
Sbjct: 241 QDNESPPELDEYVEAEELVKEKVSKRLSNPLEIIWKSFSLIFFAEWGDRSMLATIALGAA 300

Query: 301 QSPWGVATGAITGHLIATTIAILGGALLANYISEKLVGYLGGVLFLIFAIATFFGVF 358
           QSPWGVATGAITGHLIATTIAILGGALLANYISEKLVGY+GGVLFLIFA+ATFFGVF
Sbjct: 301 QSPWGVATGAITGHLIATTIAILGGALLANYISEKLVGYVGGVLFLIFAVATFFGVF 356

[Close]

BLAST of Clc05G04540 vs. TAIR 10
Match: AT4G13590.1 (Uncharacterized protein family (UPF0016) )

HSP 1 Score: 426.8 bits (1096), Expect = 1.7e-119
Identity = 239/347 (68.88%), Postives = 274/347 (78.96%), Query Frame = 0


Query: 11  VSTGKKLPFSPLLDSLPSCSASGSAFSKTILTSLKHRRVTRLNGTCGKIRAHSSNVSIGS 70
           VS+ +KLPF  L ++LP   +S     K     L+ RR  +L+   GK R  +S+  +GS
Sbjct: 19  VSSIQKLPFLSLSETLPCPKSS----RKPTFLPLRCRRRPKLDLLWGKFRVRASDAGVGS 78

Query: 71  DGYKHEEEKEGQHVVSSSAPVDINSSKTEKSPNGLPYPLSIALVLIGCGLVFSLIAFVKG 130
             Y   EE   Q      +P    SS++ K     PY LSIALVL+ CGLVFSLI FVKG
Sbjct: 79  GSYSGGEEDGSQSSSLDQSPA--TSSESLKPRGPFPYSLSIALVLLSCGLVFSLITFVKG 138

Query: 131 GPSSILAAVAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYKKGLVLLGSMGALSLMTVL 190
           GPSS+LAAVAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQY+K LVLLGSMGALSLMT+L
Sbjct: 139 GPSSVLAAVAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYEKTLVLLGSMGALSLMTIL 198

Query: 191 SVIIGRIFHSVPAQFQTTLPIGEYAAVTLLLFFGLKSIKDAWDLPSSVPKQGDESGPELD 250
           SV+IG+IF SVPAQFQTTLPIGEYAA+ LL+FFGLKSIKDAWDLP    K G+E+G EL 
Sbjct: 199 SVVIGKIFQSVPAQFQTTLPIGEYAAIALLMFFGLKSIKDAWDLPPVEAKNGEETGIELG 258

Query: 251 EYVEAEELVKEKVSKRLSNPLEIIWKSFSLIFFAEWGDRSMLATIALGAAQSPWGVATGA 310
           EY EAEELVKEK SK+L+NPLEI+WKSFSL+FFAEWGDRSMLAT+ALGAAQSP GVA+GA
Sbjct: 259 EYSEAEELVKEKASKKLTNPLEILWKSFSLVFFAEWGDRSMLATVALGAAQSPLGVASGA 318

Query: 311 ITGHLIATTIAILGGALLANYISEKLVGYLGGVLFLIFAIATFFGVF 358
           I GHL+AT +AI+GGA LANYISEKLVGY+GG LFL+FA ATFFGVF
Sbjct: 319 IAGHLVATVLAIMGGAFLANYISEKLVGYVGGALFLVFAAATFFGVF 359

[Close]

BLAST of Clc05G04540 vs. TAIR 10
Match: AT4G13590.2 (Uncharacterized protein family (UPF0016) )

HSP 1 Score: 426.0 bits (1094), Expect = 2.9e-119
Identity = 239/347 (68.88%), Postives = 273/347 (78.67%), Query Frame = 0


Query: 11  VSTGKKLPFSPLLDSLPSCSASGSAFSKTILTSLKHRRVTRLNGTCGKIRAHSSNVSIGS 70
           VS+ +KLPF  L ++LP   +S     K      K RR  +L+   GK R  +S+  +GS
Sbjct: 19  VSSIQKLPFLSLSETLPCPKSS----RKPTFLPCKCRRRPKLDLLWGKFRVRASDAGVGS 78

Query: 71  DGYKHEEEKEGQHVVSSSAPVDINSSKTEKSPNGLPYPLSIALVLIGCGLVFSLIAFVKG 130
             Y   EE   Q      +P    SS++ K     PY LSIALVL+ CGLVFSLI FVKG
Sbjct: 79  GSYSGGEEDGSQSSSLDQSPA--TSSESLKPRGPFPYSLSIALVLLSCGLVFSLITFVKG 138

Query: 131 GPSSILAAVAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYKKGLVLLGSMGALSLMTVL 190
           GPSS+LAAVAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQY+K LVLLGSMGALSLMT+L
Sbjct: 139 GPSSVLAAVAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYEKTLVLLGSMGALSLMTIL 198

Query: 191 SVIIGRIFHSVPAQFQTTLPIGEYAAVTLLLFFGLKSIKDAWDLPSSVPKQGDESGPELD 250
           SV+IG+IF SVPAQFQTTLPIGEYAA+ LL+FFGLKSIKDAWDLP    K G+E+G EL 
Sbjct: 199 SVVIGKIFQSVPAQFQTTLPIGEYAAIALLMFFGLKSIKDAWDLPPVEAKNGEETGIELG 258

Query: 251 EYVEAEELVKEKVSKRLSNPLEIIWKSFSLIFFAEWGDRSMLATIALGAAQSPWGVATGA 310
           EY EAEELVKEK SK+L+NPLEI+WKSFSL+FFAEWGDRSMLAT+ALGAAQSP GVA+GA
Sbjct: 259 EYSEAEELVKEKASKKLTNPLEILWKSFSLVFFAEWGDRSMLATVALGAAQSPLGVASGA 318

Query: 311 ITGHLIATTIAILGGALLANYISEKLVGYLGGVLFLIFAIATFFGVF 358
           I GHL+AT +AI+GGA LANYISEKLVGY+GG LFL+FA ATFFGVF
Sbjct: 319 IAGHLVATVLAIMGGAFLANYISEKLVGYVGGALFLVFAAATFFGVF 359

[Close]

BLAST of Clc05G04540 vs. TAIR 10
Match: AT1G64150.1 (Uncharacterized protein family (UPF0016) )

HSP 1 Score: 168.3 bits (425), Expect = 1.1e-41
Identity = 104/218 (47.71%), Postives = 138/218 (63.30%), Query Frame = 0


Query: 142 SGFTAAFSLIFVSEIGDKTFFIAALLAMQYKKGLVLLGSMGALSLMTVLSVIIGRIFHSV 201
           SGF +AF LIF SE+GDKTFFIAALLA +     V +G+ GAL +MT++SV++GR FH V
Sbjct: 157 SGFASAFLLIFFSELGDKTFFIAALLAARNSAATVFVGTFGALGIMTIISVVLGRTFHYV 216

Query: 202 ----PAQF-QTTLPIGEYAAVTLLLFFGLKSIKDAWDLPSSVPKQGDESGPELDEYVEAE 261
               P +F  T LPI + AAV LL++FG+ ++ DA            + G   +E  EAE
Sbjct: 217 DEVLPFRFGGTDLPIDDIAAVCLLVYFGVSTLLDA----------VSDEGKADEEQKEAE 276

Query: 262 ELVKEKVSK--RLSNPLEIIWKSFSLIFFAEWGDRSMLATIALGAAQSPWGVATGAITGH 321
             V E       +      I  +F+L+F AEWGD+S  +TIAL AA SP GV  GA+ GH
Sbjct: 277 LAVSELSGNGAGIVAAANTIISTFALVFVAEWGDKSFFSTIALAAASSPLGVIAGALAGH 336

Query: 322 LIATTIAILGGALLANYISEKLVGYLGGVLFLIFAIAT 353
             AT +A+LGG+LL N++SEK + Y+GGVLFL+FA  T
Sbjct: 337 GAATLLAVLGGSLLGNFLSEKAIAYVGGVLFLVFAAVT 364

[Close]

BLAST of Clc05G04540 vs. TAIR 10
Match: AT5G36290.1 (Uncharacterized protein family (UPF0016) )

HSP 1 Score: 134.0 bits (336), Expect = 2.3e-31
Identity = 93/224 (41.52%), Postives = 139/224 (62.05%), Query Frame = 0


Query: 136 LAAVAKSGFTA---AFSLIFVSEIGDKTFFIAALLAMQYKKGLVLLGSMGALSLMTVLSV 195
           L A A S F A   +FS+I V+EIGD+TF IAAL+AM++ K  VL G++ AL +MT+LS 
Sbjct: 74  LDATAPSVFDALFSSFSMILVTEIGDETFIIAALMAMRHPKATVLSGALSALFVMTILST 133

Query: 196 IIGRIFHSVPAQFQTTLPIGEYAAVTLLLFFGLKSIKDAWDLPSSVPKQGDESGPELDEY 255
            +GRI  ++ ++  T       AA  L  FFGL+ +  AW    S   Q  E   E++E 
Sbjct: 134 GLGRIVPNLISRKHT-----NSAATVLYAFFGLRLLYIAWRSTDSKSNQKKEM-EEVEEK 193

Query: 256 VEAEE--LVKEKVSKRLSNPLEIIWKSFSLIFFAEWGDRSMLATIALGAAQSPWGVATGA 315
           +E+ +      ++  R   P  I  +SF L F AEWGDRS +ATIAL   ++  GVA GA
Sbjct: 194 LESGQGKTPFRRLFSRFCTP--IFLESFILTFLAEWGDRSQIATIALATHKNAIGVAIGA 253

Query: 316 ITGHLIATTIAILGGALLANYISEKLVGYLGGVLFLIFAIATFF 355
             GH + T++A++GG++LA+ IS++ V  +GG+LFL F+++++F
Sbjct: 254 SIGHTVCTSLAVVGGSMLASRISQRTVATVGGLLFLGFSVSSYF 289

[Close]

BLAST of Clc05G04540 vs. TAIR 10
Match: AT5G36290.2 (Uncharacterized protein family (UPF0016) )

HSP 1 Score: 134.0 bits (336), Expect = 2.3e-31
Identity = 93/224 (41.52%), Postives = 139/224 (62.05%), Query Frame = 0


Query: 136 LAAVAKSGFTA---AFSLIFVSEIGDKTFFIAALLAMQYKKGLVLLGSMGALSLMTVLSV 195
           L A A S F A   +FS+I V+EIGD+TF IAAL+AM++ K  VL G++ AL +MT+LS 
Sbjct: 74  LDATAPSVFDALFSSFSMILVTEIGDETFIIAALMAMRHPKATVLSGALSALFVMTILST 133

Query: 196 IIGRIFHSVPAQFQTTLPIGEYAAVTLLLFFGLKSIKDAWDLPSSVPKQGDESGPELDEY 255
            +GRI  ++ ++  T       AA  L  FFGL+ +  AW    S   Q  E   E++E 
Sbjct: 134 GLGRIVPNLISRKHT-----NSAATVLYAFFGLRLLYIAWRSTDSKSNQKKEM-EEVEEK 193

Query: 256 VEAEE--LVKEKVSKRLSNPLEIIWKSFSLIFFAEWGDRSMLATIALGAAQSPWGVATGA 315
           +E+ +      ++  R   P  I  +SF L F AEWGDRS +ATIAL   ++  GVA GA
Sbjct: 194 LESGQGKTPFRRLFSRFCTP--IFLESFILTFLAEWGDRSQIATIALATHKNAIGVAIGA 253

Query: 316 ITGHLIATTIAILGGALLANYISEKLVGYLGGVLFLIFAIATFF 355
             GH + T++A++GG++LA+ IS++ V  +GG+LFL F+++++F
Sbjct: 254 SIGHTVCTSLAVVGGSMLASRISQRTVATVGGLLFLGFSVSSYF 289

The following BLAST results are available for this feature:

BLAST of Clc05G04540 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038900282.1	2.8e-180	96.36	protein PAM71-homolog, chloroplastic isoform X1 [Benincasa hispida]	[more]
XP_008438406.1	8.5e-177	94.96	PREDICTED: GDT1-like protein 2, chloroplastic [Cucumis melo]	[more]
XP_011650895.1	2.7e-175	94.12	protein PAM71-homolog, chloroplastic [Cucumis sativus]	[more]
XP_023521675.1	7.9e-175	94.40	protein PAM71-homolog, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_02353...	[more]
XP_038900287.1	7.9e-175	94.68	protein PAM71-homolog, chloroplastic isoform X2 [Benincasa hispida]	[more]

BLAST of Clc05G04540 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9T0H9	2.4e-118	68.88	Protein PAM71-homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAM71-HL...	[more]
Q2R2Z4	1.8e-100	67.44	GDT1-like protein 2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=O...	[more]
Q94AX5	1.6e-40	47.71	Protein PAM71, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAM71 PE=1 SV=2	[more]
Q5NAY7	2.3e-39	45.95	GDT1-like protein 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=O...	[more]
B8AAM2	2.9e-39	45.95	GDT1-like protein 1, chloroplastic OS=Oryza sativa subsp. indica OX=39946 GN=OsI...	[more]

BLAST of Clc05G04540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3AWY0	4.1e-177	94.96	GDT1 family protein OS=Cucumis melo OX=3656 GN=LOC103483513 PE=3 SV=1	[more]
A0A0A0L826	1.3e-175	94.12	GDT1 family protein OS=Cucumis sativus OX=3659 GN=Csa_3G133280 PE=3 SV=1	[more]
A0A6J1IBK7	5.0e-175	94.12	GDT1 family protein OS=Cucurbita maxima OX=3661 GN=LOC111473197 PE=3 SV=1	[more]
A0A6J1G9C7	5.0e-175	94.12	GDT1 family protein OS=Cucurbita moschata OX=3662 GN=LOC111452154 PE=3 SV=1	[more]
A0A6J1IBI9	1.9e-174	93.84	GDT1 family protein OS=Cucurbita maxima OX=3661 GN=LOC111473663 PE=3 SV=1	[more]

BLAST of Clc05G04540 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G13590.1	1.7e-119	68.88	Uncharacterized protein family (UPF0016)	[more]
AT4G13590.2	2.9e-119	68.88	Uncharacterized protein family (UPF0016)	[more]
AT1G64150.1	1.1e-41	47.71	Uncharacterized protein family (UPF0016)	[more]
AT5G36290.1	2.3e-31	41.52	Uncharacterized protein family (UPF0016)	[more]
AT5G36290.2	2.3e-31	41.52	Uncharacterized protein family (UPF0016)	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001727	Gdt1 family	PFAM	PF01169	UPF0016	coord: 276..349 e-value: 9.5E-21 score: 73.9 coord: 146..224 e-value: 1.3E-19 score: 70.3
IPR001727	Gdt1 family	PANTHER	PTHR12608	TRANSMEMBRANE PROTEIN HTP-1 RELATED	coord: 38..357
IPR001727	Gdt1 family	PROSITE	PS01214	UPF0016	coord: 155..164
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..102
None	No IPR available	PANTHER	PTHR12608:SF7	PROTEIN PAM71-HOMOLOG, CHLOROPLASTIC	coord: 38..357

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc05G04540.2	Clc05G04540.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0070588	calcium ion transmembrane transport
biological_process	GO:0032468	Golgi calcium ion homeostasis
biological_process	GO:0032472	Golgi calcium ion transport
biological_process	GO:0071421	manganese ion transmembrane transport
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0015085	calcium ion transmembrane transporter activity
molecular_function	GO:0005384	manganese ion transmembrane transporter activity