Clc05G04085 (gene) Watermelon (cordophanus) v2

Overview
NameClc05G04085
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Descriptiontranslation machinery-associated protein 7
LocationClcChr05: 2928973 .. 2930583 (-)
RNA-Seq ExpressionClc05G04085
SyntenyClc05G04085
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGTCCAAGCAAGGTACGATCGATCTATTCAGCGTTCTTTTTCGATTTCACCTTCGTTACGGTTGTATCATCGATCTAAATTCGAAGTTGTTAACTATGATATGATGTTTAATCCCCCGTTTTACCGATTTAAATCATGATATGGAGAATCGATTTTGTTGTATGTCTTTATAGGAGGGAAAGCAAAGCCTCTGAAGCAACCCAAGGTTGATAAGAAAGAGTACGACGAGGTATGCTTTCAATTTATTATTTTATGGATCCATGCCGCAAATCTATTTTCTTCCTGGTTCTCTTTATTTTGGATACAACTTTTGGTATCGAAGAATTTCGATCTCCCTTGAAGGCTGTTAATGATTTCGTGAAGTTTCAAATTGGTGATTGTGGCTTAGCCCGCTTTCAGGGTATTACCAAAATTATATTTAAGTAACGTGTACCTGATTTTTGGGTTTGATCTAGCTTTTGCCTTTCTTCTTATTATTATTATTGAAAAAAATTGAACTGCAAGCATAATTATTGTCCATTCCATTCACCGAGGAGGAAAGTTCGAGCTAAATTATTAAAGGATGCTCCTCACCTGAAATCACTGTCTATTCCATTTATTGTTTATTGTTATTTAATGGTTGCATGATGAAGGGAAGATGGAAGGAACTGTAACTGCCGCTACCTTAATTCGTTGTGGAGAAATTCTTTTTTGTAGTCAGCTAAGTAACATGGCGAGGTATTATTTTCAGAACTAGAATATGAATTTTTCTGGGTTTTCTCAACAGGTTGATCTGGCCAATATGCAAAAGAAGAAGGAGGAGGAGAAGGTTTGAACTTGAACTTTTAAGTTGAAAACAGTCGGTTTAGTTTAGATGCTTGGTTCTTGAATGAATGCAAACTGTTCGTGTTGGTGCATGTCCTTTTTTAACTTTTGTTAATTTTGGCCTTGGTTCCTTCATTTTCATCTCATCTTTCAATGGAAATTTTAGTATGACAATTCACTCACTGAATTTCTTAAGTACAACCACAAATTTGTATTAAAGGGTTTTCATAGTGTATTAACTTTAATTGGACCAAAATGAAGATTCTCAAAAGATAAAGAACTTAAACGAACGTTTTTATAGTACAATAGCAAGCCAAACTATAGCCGAAAGTTACATAAGTAGTATTTAAACATAAACCAAAACTGTCACAAAACTTTTTCTTCTGGCCCATAAGTGTGGAAGATCACTGCTACTGAAGTATAATTTGGAGATGTTTGATGATATATATATACAGGCGATCAGGGAGCTTAGAGCAAAAGCCCAACAGAAGGGGACCTTTGGAGGTGCTGGGCTCAAGAAAAGTGGGAAGAAATGAGGGTTCCCACGCAAATTCATGGAGGTAGATTACTTGACGACCTGAATTTGCAGACATTTAATTGCTATTGAATCAGTTGATTGTCTTTGTGTTCCTTGTAAAACCCTTGAAAGAAGATAATATGGTGTGGAATTATTATGGAAGTTGAATGCTTCTCAATATTCTGAACTTTCTTTAGCTTTGATATTCTAAACACCAACCCCCCCCCCCCCCCCCCCCCCCCCACTTCTCTCTCAACTTTTTTCTTTTTTTCCTTTTTTTCTTTTT

mRNA sequence

ATGTCGTCCAAGCAAGGAGGGAAAGCAAAGCCTCTGAAGCAACCCAAGGTTGATAAGAAAGAGTACGACGAGGTATGCTTTCAATTTATTATTTTATGGATCCATGCCGCAAATCTATTTTCTTCCTGGCGATCAGGGAGCTTAGAGCAAAAGCCCAACAGAAGGGGACCTTTGGAGGTGCTGGGCTCAAGAAAAGTGGGAAGAAATGAGGGTTCCCACGCAAATTCATGGAGGTAGATTACTTGACGACCTGAATTTGCAGACATTTAATTGCTATTGAATCAGTTGATTGTCTTTGTGTTCCTTGTAAAACCCTTGAAAGAAGATAATATGGTGTGGAATTATTATGGAAGTTGAATGCTTCTCAATATTCTGAACTTTCTTTAGCTTTGATATTCTAAACACCAACCCCCCCCCCCCCCCCCCCCCCCCCACTTCTCTCTCAACTTTTTTCTTTTTTTCCTTTTTTTCTTTTT

Coding sequence (CDS)

ATGTCGTCCAAGCAAGGAGGGAAAGCAAAGCCTCTGAAGCAACCCAAGGTTGATAAGAAAGAGTACGACGAGGTATGCTTTCAATTTATTATTTTATGGATCCATGCCGCAAATCTATTTTCTTCCTGGCGATCAGGGAGCTTAGAGCAAAAGCCCAACAGAAGGGGACCTTTGGAGGTGCTGGGCTCAAGAAAAGTGGGAAGAAATGAGGGTTCCCACGCAAATTCATGGAGGTAG

Protein sequence

MSSKQGGKAKPLKQPKVDKKEYDEVCFQFIILWIHAANLFSSWRSGSLEQKPNRRGPLEVLGSRKVGRNEGSHANSWR
Homology
[Close]
BLAST of Clc05G04085 vs. NCBI nr
Match: KAG4382676.1 (hypothetical protein GLYMA_14G136351v4 [Glycine max])

HSP 1 Score: 64.7 bits (156), Expect = 4.0e-07
Identity = 38/72 (52.78%), Postives = 45/72 (62.50%), Query Frame = 0 

Query: 1  MSSKQGGKAKPLKQPKVDKKEYDEVCFQFIILWIHAANLFSSWRSGSLEQKPNRRGPLEV 60
          MS+KQGGKAKPLK+PK DKK+YDEV    I      A          L+ K  ++G  EV
Sbjct: 1  MSTKQGGKAKPLKKPKSDKKDYDEVDMANIQKKKEEAKALK-----ELKAKAQQKGSFEV 60

Query: 61 LGSRKVGRNEGS 73
          LGSRKV RN+GS
Sbjct: 61 LGSRKVERNKGS 67

[Close]
BLAST of Clc05G04085 vs. NCBI nr
Match: KAG8656340.1 (hypothetical protein MANES_04G124600v8 [Manihot esculenta])

HSP 1 Score: 54.7 bits (130), Expect = 4.2e-04
Identity = 32/72 (44.44%), Postives = 39/72 (54.17%), Query Frame = 0 

Query: 1  MSSKQGGKAKPLKQPKVDKKEYDEVCFQFIILWIHAANLFSSWRS----GSLEQKPNRRG 60
          MSSKQGGKAKPLKQPK DKKEYDE     ++L    AN+            L  K  ++G
Sbjct: 1  MSSKQGGKAKPLKQPKADKKEYDEYYEFILVLQTDMANIQKKKEEEKALKELRAKATQKG 60

Query: 61 PLEVLGSRKVGR 69
               G +K G+
Sbjct: 61 TFGGSGLKKSGK 72

[Close]
BLAST of Clc05G04085 vs. ExPASy TrEMBL
Match: A0A6J1FTB5 (translation machinery-associated protein 7-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111448285 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 5.9e-04
Identity = 25/25 (100.00%), Postives = 25/25 (100.00%), Query Frame = 0 

Query: 1  MSSKQGGKAKPLKQPKVDKKEYDEV 26
          MSSKQGGKAKPLKQPKVDKKEYDEV
Sbjct: 1  MSSKQGGKAKPLKQPKVDKKEYDEV 25

[Close]
BLAST of Clc05G04085 vs. ExPASy TrEMBL
Match: A0A6J1JGF3 (translation machinery-associated protein 7-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111484156 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 5.9e-04
Identity = 25/25 (100.00%), Postives = 25/25 (100.00%), Query Frame = 0 

Query: 1  MSSKQGGKAKPLKQPKVDKKEYDEV 26
          MSSKQGGKAKPLKQPKVDKKEYDEV
Sbjct: 1  MSSKQGGKAKPLKQPKVDKKEYDEV 25

[Close]
BLAST of Clc05G04085 vs. ExPASy TrEMBL
Match: A0A6J1CWS4 (translation machinery-associated protein 7 OS=Momordica charantia OX=3673 GN=LOC111015118 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 5.9e-04
Identity = 25/25 (100.00%), Postives = 25/25 (100.00%), Query Frame = 0 

Query: 1  MSSKQGGKAKPLKQPKVDKKEYDEV 26
          MSSKQGGKAKPLKQPKVDKKEYDEV
Sbjct: 35 MSSKQGGKAKPLKQPKVDKKEYDEV 59

[Close]
BLAST of Clc05G04085 vs. ExPASy TrEMBL
Match: A0A2P5ELN0 (Translation machinery associated TMA OS=Trema orientale OX=63057 GN=TorRG33x02_177400 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 5.9e-04
Identity = 25/25 (100.00%), Postives = 25/25 (100.00%), Query Frame = 0 

Query: 1  MSSKQGGKAKPLKQPKVDKKEYDEV 26
          MSSKQGGKAKPLKQPKVDKKEYDEV
Sbjct: 1  MSSKQGGKAKPLKQPKVDKKEYDEV 25

[Close]
BLAST of Clc05G04085 vs. TAIR 10
Match: AT1G15270.1 (Translation machinery associated TMA7 )

HSP 1 Score: 50.1 bits (118), Expect = 9.6e-07
Identity = 23/24 (95.83%), Postives = 23/24 (95.83%), Query Frame = 0 

Query: 1  MSSKQGGKAKPLKQPKVDKKEYDE 25
          MSSKQGGKAKPLKQPK DKKEYDE
Sbjct: 1  MSSKQGGKAKPLKQPKADKKEYDE 24

[Close]
BLAST of Clc05G04085 vs. TAIR 10
Match: AT3G16040.1 (Translation machinery associated TMA7 )

HSP 1 Score: 44.7 bits (104), Expect = 4.0e-05
Identity = 21/24 (87.50%), Postives = 21/24 (87.50%), Query Frame = 0 

Query: 1  MSSKQGGKAKPLKQPKVDKKEYDE 25
          MSSKQGGK KPLKQPK  KKEYDE
Sbjct: 1  MSSKQGGKLKPLKQPKSGKKEYDE 24

The following BLAST results are available for this feature:
BLAST of Clc05G04085 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG4382676.14.0e-0752.78hypothetical protein GLYMA_14G136351v4 [Glycine max][more]
KAG8656340.14.2e-0444.44hypothetical protein MANES_04G124600v8 [Manihot esculenta][more]
BLAST of Clc05G04085 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc05G04085 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FTB55.9e-04100.00translation machinery-associated protein 7-like isoform X2 OS=Cucurbita moschata... [more]
A0A6J1JGF35.9e-04100.00translation machinery-associated protein 7-like isoform X2 OS=Cucurbita maxima O... [more]
A0A6J1CWS45.9e-04100.00translation machinery-associated protein 7 OS=Momordica charantia OX=3673 GN=LOC... [more]
A0A2P5ELN05.9e-04100.00Translation machinery associated TMA OS=Trema orientale OX=63057 GN=TorRG33x02_1... [more]
BLAST of Clc05G04085 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G15270.19.6e-0795.83Translation machinery associated TMA7 [more]
AT3G16040.14.0e-0587.50Translation machinery associated TMA7 [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015157Translation machinery associated TMA7PFAMPF09072TMA7coord: 3..24
e-value: 1.9E-7
score: 31.8
IPR015157Translation machinery associated TMA7PANTHERPTHR28632TRANSLATION MACHINERY-ASSOCIATED PROTEIN 7coord: 1..47
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 45..78
NoneNo IPR availablePANTHERPTHR28632:SF8BNAA06G09940D PROTEINcoord: 1..47

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc05G04085.1Clc05G04085.1mRNA