Clc05G03000 (gene) Watermelon (cordophanus) v2

Overview
NameClc05G03000
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
LocationClcChr05: 2060582 .. 2061324 (+)
RNA-Seq ExpressionClc05G03000
SyntenyClc05G03000
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTTGCGCCCCACGGTGGGGGGAGATAGGTTTTTTTATAAATTTTTACTATCTCGTAATTATTTATGCTATTTGTCTTCATAAACTCTTCATAACATAAATCTTGGAAAAAATAGGTTCAATTATGTCATCAAGAATGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCACGGTGGGCGAAGGTGGACTTTTTATAAATTTTTACTATCTCGTAATTATTTATGATATTTGTCTTCATAAACTGTTCGTAACGTAGATCTTGGAACTGTTAGGTTCAATCTCATCAATCAGATGGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCACGGTGGGCGAAGGTGGACTTTTTATAAATTTTTACTATCTCGTAATTATTTATGATATTTGTCTTCATAAACTGTTCGTAACGTATATCTTGGAACTGTTAGGTTCAATCTCATCATTCAGATGGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCACGGTGGGCGAAGGTGGACTTTTTATAAATTTTTACTATCTCGTAATTATTTATGATATTTGTCTTCATAAACTGTTCGTAACGTATATCTTGGAACTGTTAGGTTCAATCTCATCATTCAGATGGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAA

mRNA sequence

ATGGGTTTGCGCCCCACGGTGGGGGGAGATAGGTTCAATTATGTCATCAAGAATGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCACGGTGGGCGAAGATCTTGGAACTGTTAGGTTCAATCTCATCAATCAGATGGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCACGGTGGGCGAAGGTGGACTTTTTATAAATTTTTACTATCTCATGGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCACGGTGGGCGAAGATGGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAA

Coding sequence (CDS)

ATGGGTTTGCGCCCCACGGTGGGGGGAGATAGGTTCAATTATGTCATCAAGAATGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCACGGTGGGCGAAGATCTTGGAACTGTTAGGTTCAATCTCATCAATCAGATGGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCACGGTGGGCGAAGGTGGACTTTTTATAAATTTTTACTATCTCATGGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCACGGTGGGCGAAGATGGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAA

Protein sequence

MGLRPTVGGDRFNYVIKNARLAQSVERKALNLVVVGSSPTVGEDLGTVRFNLINQMARLAQLVERKALNLVVVGSSPTVGEGGLFINFYYLMARLAQLVERKALNLVVVGSSPTVGEDGPSSSVGRAQGS
Homology
[Close]
BLAST of Clc05G03000 vs. NCBI nr
Match: KAA0049039.1 (hypothetical protein E6C27_scaffold171G002650 [Cucumis melo var. makuwa])

HSP 1 Score: 124.4 bits (311), Expect = 7.2e-25
Identity = 79/122 (64.75%), Postives = 86/122 (70.49%), Query Frame = 0 

Query: 12  FNYVIKNARLAQSVERKALNLVVVGSSPTVGEDLGTVRFNLINQMARLAQLVERKALNLV 71
           F+   K ARLAQSVERKALNLVVVGS+PTVGE LG+       + ARLAQ VERKALNLV
Sbjct: 23  FDSAFKKARLAQSVERKALNLVVVGSNPTVGEGLGSA-----VKTARLAQSVERKALNLV 82

Query: 72  VVGSSPTVGEG-----------GLFIN-----FYYLMARLAQLVERKALNLVVVGSSPTV 118
           VVGS+PTVGEG           G ++      F    ARLAQLVERKALNLVVVGSSPTV
Sbjct: 83  VVGSNPTVGEGIGFSTQNGIAQGSWVRTTRYAFASKTARLAQLVERKALNLVVVGSSPTV 139

[Close]
BLAST of Clc05G03000 vs. NCBI nr
Match: TYK17525.1 (hypothetical protein E5676_scaffold434G003940 [Cucumis melo var. makuwa])

HSP 1 Score: 120.9 bits (302), Expect = 7.9e-24
Identity = 78/122 (63.93%), Postives = 85/122 (69.67%), Query Frame = 0 

Query: 12  FNYVIKNARLAQSVERKALNLVVVGSSPTVGEDLGTVRFNLINQMARLAQLVERKALNLV 71
           F+   K ARLAQSVERKAL LVVVGS+PTVGE LG+       + ARLAQ VERKALNLV
Sbjct: 23  FDSAFKKARLAQSVERKALILVVVGSNPTVGEGLGSA-----VKTARLAQSVERKALNLV 82

Query: 72  VVGSSPTVGEG-----------GLFIN-----FYYLMARLAQLVERKALNLVVVGSSPTV 118
           VVGS+PTVGEG           G ++      F    ARLAQLVERKALNLVVVGSSPTV
Sbjct: 83  VVGSNPTVGEGIGFSTQNGIAQGSWVRTTRYAFASKTARLAQLVERKALNLVVVGSSPTV 139

[Close]
BLAST of Clc05G03000 vs. ExPASy TrEMBL
Match: A0A5A7U6B3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G002650 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 3.5e-25
Identity = 79/122 (64.75%), Postives = 86/122 (70.49%), Query Frame = 0 

Query: 12  FNYVIKNARLAQSVERKALNLVVVGSSPTVGEDLGTVRFNLINQMARLAQLVERKALNLV 71
           F+   K ARLAQSVERKALNLVVVGS+PTVGE LG+       + ARLAQ VERKALNLV
Sbjct: 23  FDSAFKKARLAQSVERKALNLVVVGSNPTVGEGLGSA-----VKTARLAQSVERKALNLV 82

Query: 72  VVGSSPTVGEG-----------GLFIN-----FYYLMARLAQLVERKALNLVVVGSSPTV 118
           VVGS+PTVGEG           G ++      F    ARLAQLVERKALNLVVVGSSPTV
Sbjct: 83  VVGSNPTVGEGIGFSTQNGIAQGSWVRTTRYAFASKTARLAQLVERKALNLVVVGSSPTV 139

[Close]
BLAST of Clc05G03000 vs. ExPASy TrEMBL
Match: A0A5D3D1C1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G003940 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 3.8e-24
Identity = 78/122 (63.93%), Postives = 85/122 (69.67%), Query Frame = 0 

Query: 12  FNYVIKNARLAQSVERKALNLVVVGSSPTVGEDLGTVRFNLINQMARLAQLVERKALNLV 71
           F+   K ARLAQSVERKAL LVVVGS+PTVGE LG+       + ARLAQ VERKALNLV
Sbjct: 23  FDSAFKKARLAQSVERKALILVVVGSNPTVGEGLGSA-----VKTARLAQSVERKALNLV 82

Query: 72  VVGSSPTVGEG-----------GLFIN-----FYYLMARLAQLVERKALNLVVVGSSPTV 118
           VVGS+PTVGEG           G ++      F    ARLAQLVERKALNLVVVGSSPTV
Sbjct: 83  VVGSNPTVGEGIGFSTQNGIAQGSWVRTTRYAFASKTARLAQLVERKALNLVVVGSSPTV 139

The following BLAST results are available for this feature:
BLAST of Clc05G03000 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0049039.17.2e-2564.75hypothetical protein E6C27_scaffold171G002650 [Cucumis melo var. makuwa][more]
TYK17525.17.9e-2463.93hypothetical protein E5676_scaffold434G003940 [Cucumis melo var. makuwa][more]
BLAST of Clc05G03000 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc05G03000 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7U6B33.5e-2564.75Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3D1C13.8e-2463.93Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of Clc05G03000 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc05G03000.1Clc05G03000.1mRNA