Clc05G02650 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc05G02650
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Histone deacetylase complex subunit SAP18
Location	ClcChr05: 1804149 .. 1807318 (+)
RNA-Seq Expression	Clc05G02650
Synteny	Clc05G02650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCGCCTATAAACTGCCGAAGCTTCCAGAATGAACAGTAGAAGTTGAAACTTGAAGAATACCGAGAGATAGAAATGGCGGGAGAAACAGAAGCACCAAGGAGGAATTATGGCGCTCTTCCAAGAGCCCCTCACGCTCCTCCCCGTCCTCGTTTGGAGCCCGTTGATCGCGAAAAGGTTTCTCTCTTTCTCTTCTCTAATTTTAGGGTTTCTGTCCCTTCCGTCGTTGTCTCTGATTTTCAATTTTGGTGTTCATTACCTTGTTATTGAATTCATCTTCATCGTCAACCGTTTTCTTGTTTCTTTGTTCTAGAATAGAACGTCATAGAAATCTCATTATTTGAAACTTTGATTATTGCCTTTTCGCTACCTATTAGTGTTCGGAGCTGGCTGTGTAAGCATAGATGGCAACTTTCATTTTCTATGCTGAGTAATTTTGTTTCTCTCCCTGCAGACTTGTCCTTTGCTGCTTCGTGTTTTCACGAAGGTACGTTGTATTTTGATGCTGGATTTTGTTTTTATGAATTTTGTGTCGTATCTATGCAAAGTACTCAAAGAACAAGTGTGTTTCATCGCTTCAGGAACTGTAGTTTAATCCAGCCGACGTATCAATAGGGATGAAATGAAGTGCGTTGGGTGTAAAATTTGTGTGGAATTTTCAAGTTTATGTCACTGTGTGGACAATAGGATTTAGGAATCTGATGAGAGGATAATTTAAGCAAATTTCCAGGGTTTCGTTGCTACATTTAGGTTATGAGGCGTCTGGTTCTAAGTAATGCCACATTTGGATTATGGAAGATTCCTTTGGCTGTTTTTGTTAATTTTTGACAGATTGGGAGTCATCATTTCAATGAAGACTTTGCTGTGAGAGGCAAGGAGCCGAGGGATGAGGTTCAAATTTATACCTGGAAAGATGCTACTCTTCGCGAGCTAACTGATCTGGTTGTATTTCGCATTCCTTTTCAATCTCTTGTCCCTCCACGCTTTGCATGACTTAAATACCAATGATCTGTATCTTTTTGAATTTATATACATGATGCCTTCATAGGAACTATTTTCCCTTCCATTGCCCCTTGAACTTACGTGTCTGTACATTTTCTTTACCCTTTGGGTGGGGGAGTTTACAGGTCAAAGAGGTAGCTCCGGAAGCCAGGAGGAGAAATGCTAAACTTTCCTTCGCTTTGGTGTATCCGGATAGACATGGCCGCTTTGTATTGAGAGAGGTATCTATTTCTCTCCTCTCCCACGTACGTCATGCATGCACACATATATTTATGCTTTCAGGAGGCGCTTTTTACTTAGTTAAGTGTGTCAAAATGAACACCCAAGTTGAATGAGGTAAAATTATTATTTGTTCATTTATCAAATACAGGCGAGCCAAAGAGAGCTTACCTCAATTTGGCATGAACTATTGTCAATGATGAAGGAGTATGAGGTTTGAAACTTATCAAAACTAGGCTAGATATTGCCCAAAAATTCATACCACAAATACTCAAAATGTAGCCATATTATTAATTAGATTCGACCAGAAAAGCATAAACACTCGTACAAGTTCTAGCTACAAAAACTGAACGACAAAGTGCACAAACCTAGCCAAACAAATGCTTAACTACATAAATTAGTACTCATGATTATAATGTATCCAACTACAAGAATGCCATAAACGTCAAAGAAAAAAATGACACTTGAACTAAGGGGAAGTATTGAAGTAATTATTTATTTCAGTTTTGGTATCAATTCAATGAAATTAAGATTGTAGGGTTGGATTTTACTCACTCGACCAAGTGCTGAAAAAAATGTTTCTCAATGTCCATCCTGTTCGTCTATGACTTGTTCAATTGGGACAATGTTTTCAGACTGGACTCTTTCATAGTCTTAAGAAAGTTTGAAGGCCACCATTTTGTTAAAAGATGGGTCGTTCTACTTCTTGGACATACGAAGACATTAAACATGCTGAACTTGTGCTTAATTTGCATACTCTTGCATGACTGTGATGGAGAAGCTGCCAAATTAAATTCATTTAGTGCTGAGAGGGGACGACAACTTGGTGCAGGGTGACTTACTAAATTAGGCTGAACTGAAAACTTTTGTACTGAACCATTCTGTCTTCCTGCCCTGCTGTTGCTTGCAGTTTCCTTAGCCGCATAGATTTTTCTGTATAAGGGCTTAAGTTTGAGATATAAATGAATTCGTGATAAATTGCCCTCACTTACTTGACCTTTTGTAATTTAACTTTACAAATGTATGAAGAAAGCAAATTTTGAGTCCTAGCTTTTAGTAGATATTATTAGCTACCATTTTGAAGATTGGTGGTTTGATCTCCATCTCTCCAATTGTTTTCTTGAGGATCCCACGTCGAAAAGACGAAGCTATCTCACAATCTTTAAAAGACACATGAGTTACTCTTCTGATTATCAATTAATTTTGAGATTGAACCGTATGGTATCATAGCTCATGAAGCTTGAATGAGTATTTGGTCCAAAACGTTGGGGGGGGGGATCTCATCCCACGTCGGAAAGATGAAGAAACCTCACAATCTTGATAAGATACCTGAGTTATTCTCGTTTGGTTTGAAGATGGAAATTTATGATTATCTAATATATTCTTGAGTCATATGATTCTGTTTCTTTATGTGAAGGTAGGGAAGACATTCTCGTTTGGGAATGGACGATTAGACGATAGCTTGGCTTTGGCAGAACTCGGTTTTCAGGTAAAACAAACGTGGCTTTCGTTTTTGCCATATCAATCCTGTATTCCTTCTCATTCTTGCTGCAATTTTTTCCACGCAGATTGGAGATTACTTGGATGTGGCAATTGTATAAGGTCTGTGGTGCCTTTATATCCTAATAACGCCTATATCAACCGGAAAAGGTATCGGGATTTCTTTTTCTAGTGAAGAACCAAAGGAATGAGGATATTATTAGCTTCAATCTTCTAATGTATATTCCATTTAAGAATTTGGTTGAAAATCCTTTACTTGTATGTCTTGTTCCCCTTAGTCCTAATAGGGGTTCATGATAGTCATCGTTATGTTCATTTGAGTTGCCTTGTTGTAAAAGTATTGCATTGCATGGAGCAGGCCTTAGACAGAGTTTTCGTTAGGACGATAATGATGGAACTATTTTAGGCCTGTAATTATCTTAATATTAGTTTTTCAGTTTTTAAAATTCAA

mRNA sequence

CTCGCCTATAAACTGCCGAAGCTTCCAGAATGAACAGTAGAAGTTGAAACTTGAAGAATACCGAGAGATAGAAATGGCGGGAGAAACAGAAGCACCAAGGAGGAATTATGGCGCTCTTCCAAGAGCCCCTCACGCTCCTCCCCGTCCTCGTTTGGAGCCCGTTGATCGCGAAAAGACTTGTCCTTTGCTGCTTCGTGTTTTCACGAAGATTGGGAGTCATCATTTCAATGAAGACTTTGCTGTGAGAGGCAAGGAGCCGAGGGATGAGGTTCAAATTTATACCTGGAAAGATGCTACTCTTCGCGAGCTAACTGATCTGGTTGTCAAAGAGGTAGCTCCGGAAGCCAGGAGGAGAAATGCTAAACTTTCCTTCGCTTTGGTGTATCCGGATAGACATGGCCGCTTTGTATTGAGAGAGGCGAGCCAAAGAGAGCTTACCTCAATTTGGCATGAACTATTGTCAATGATGAAGGAGTATGAGGTAGGGAAGACATTCTCGTTTGGGAATGGACGATTAGACGATAGCTTGGCTTTGGCAGAACTCGGTTTTCAGATTGGAGATTACTTGGATGTGGCAATTGTATAAGGTCTGTGGTGCCTTTATATCCTAATAACGCCTATATCAACCGGAAAAGGTATCGGGATTTCTTTTTCTAGTGAAGAACCAAAGGAATGAGGATATTATTAGCTTCAATCTTCTAATGTATATTCCATTTAAGAATTTGGTTGAAAATCCTTTACTTGTATGTCTTGTTCCCCTTAGTCCTAATAGGGGTTCATGATAGTCATCGTTATGTTCATTTGAGTTGCCTTGTTGTAAAAGTATTGCATTGCATGGAGCAGGCCTTAGACAGAGTTTTCGTTAGGACGATAATGATGGAACTATTTTAGGCCTGTAATTATCTTAATATTAGTTTTTCAGTTTTTAAAATTCAA

Coding sequence (CDS)

ATGGCGGGAGAAACAGAAGCACCAAGGAGGAATTATGGCGCTCTTCCAAGAGCCCCTCACGCTCCTCCCCGTCCTCGTTTGGAGCCCGTTGATCGCGAAAAGACTTGTCCTTTGCTGCTTCGTGTTTTCACGAAGATTGGGAGTCATCATTTCAATGAAGACTTTGCTGTGAGAGGCAAGGAGCCGAGGGATGAGGTTCAAATTTATACCTGGAAAGATGCTACTCTTCGCGAGCTAACTGATCTGGTTGTCAAAGAGGTAGCTCCGGAAGCCAGGAGGAGAAATGCTAAACTTTCCTTCGCTTTGGTGTATCCGGATAGACATGGCCGCTTTGTATTGAGAGAGGCGAGCCAAAGAGAGCTTACCTCAATTTGGCATGAACTATTGTCAATGATGAAGGAGTATGAGGTAGGGAAGACATTCTCGTTTGGGAATGGACGATTAGACGATAGCTTGGCTTTGGCAGAACTCGGTTTTCAGATTGGAGATTACTTGGATGTGGCAATTGTATAA

Protein sequence

MAGETEAPRRNYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVVKEVAPEARRRNAKLSFALVYPDRHGRFVLREASQRELTSIWHELLSMMKEYEVGKTFSFGNGRLDDSLALAELGFQIGDYLDVAIV

Homology

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BLAST of Clc05G02650 vs. NCBI nr
Match: KAA0049010.1 (histone deacetylase complex subunit SAP18 [Cucumis melo var. makuwa])

HSP 1 Score: 276.2 bits (705), Expect = 1.9e-70
Identity = 142/170 (83.53%), Postives = 143/170 (84.12%), Query Frame = 0


Query: 1   MAGETEAPRRNYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 60
           MAGE EAPRR YGA PRA HAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK
Sbjct: 1   MAGEAEAPRRAYGAPPRATHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 60

Query: 61  EPRDEVQIYTWKDATLRELTDLVVKEVAPEARRRNAKLSFALVYPDRHGRFVLREASQRE 120
           EPRDEVQIYTWKDATLRELTDLVVKEVAPEARRRNAKLSFALVYPDRHGRFVLR      
Sbjct: 61  EPRDEVQIYTWKDATLRELTDLVVKEVAPEARRRNAKLSFALVYPDRHGRFVLR------ 120

Query: 121 LTSIWHELLSMMKEYEVGKTFSFGNGRLDDSLALAELGFQIGDYLDVAIV 171
                          EVGKTFSFGN RLDDSLAL ELGFQIGDYLDVAI+
Sbjct: 121 ---------------EVGKTFSFGNRRLDDSLALGELGFQIGDYLDVAII 149

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BLAST of Clc05G02650 vs. NCBI nr
Match: XP_038879427.1 (histone deacetylase complex subunit SAP18 [Benincasa hispida])

HSP 1 Score: 275.8 bits (704), Expect = 2.5e-70
Identity = 143/170 (84.12%), Postives = 144/170 (84.71%), Query Frame = 0


Query: 1   MAGETEAPRRNYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 60
           MAGE EAPRR YGA PRA HAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK
Sbjct: 1   MAGEAEAPRRAYGAFPRASHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 60

Query: 61  EPRDEVQIYTWKDATLRELTDLVVKEVAPEARRRNAKLSFALVYPDRHGRFVLREASQRE 120
           EPRDEVQIYTWKDATLRELTDL VKEVAPEARRRNAKLSFALVYPDRHGRFVLR      
Sbjct: 61  EPRDEVQIYTWKDATLRELTDL-VKEVAPEARRRNAKLSFALVYPDRHGRFVLR------ 120

Query: 121 LTSIWHELLSMMKEYEVGKTFSFGNGRLDDSLALAELGFQIGDYLDVAIV 171
                          EVGKTFSFGNGRLDDSLALAELGFQIGDYLDVAI+
Sbjct: 121 ---------------EVGKTFSFGNGRLDDSLALAELGFQIGDYLDVAII 148

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BLAST of Clc05G02650 vs. NCBI nr
Match: XP_022943948.1 (histone deacetylase complex subunit SAP18-like [Cucurbita moschata] >KAG6597180.1 Histone deacetylase complex subunit SAP18, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028645.1 Histone deacetylase complex subunit SAP18, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 273.1 bits (697), Expect = 1.6e-69
Identity = 141/170 (82.94%), Postives = 144/170 (84.71%), Query Frame = 0


Query: 1   MAGETEAPRRNYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 60
           MAGE EAPRR YGA PRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK
Sbjct: 24  MAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 83

Query: 61  EPRDEVQIYTWKDATLRELTDLVVKEVAPEARRRNAKLSFALVYPDRHGRFVLREASQRE 120
           EPRDEVQIYTWKDATLRELTDL VKEVAPEARRRNAKLSFALVYPDRHGRFV+R      
Sbjct: 84  EPRDEVQIYTWKDATLRELTDL-VKEVAPEARRRNAKLSFALVYPDRHGRFVVR------ 143

Query: 121 LTSIWHELLSMMKEYEVGKTFSFGNGRLDDSLALAELGFQIGDYLDVAIV 171
                          EVGKTFSFGNGR DD+LALAELGFQIGDYLDVAI+
Sbjct: 144 ---------------EVGKTFSFGNGRSDDNLALAELGFQIGDYLDVAII 171

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BLAST of Clc05G02650 vs. NCBI nr
Match: XP_023538738.1 (histone deacetylase complex subunit SAP18 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 273.1 bits (697), Expect = 1.6e-69
Identity = 141/170 (82.94%), Postives = 144/170 (84.71%), Query Frame = 0


Query: 1   MAGETEAPRRNYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 60
           MAGE EAPRR YGA PRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK
Sbjct: 1   MAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 60

Query: 61  EPRDEVQIYTWKDATLRELTDLVVKEVAPEARRRNAKLSFALVYPDRHGRFVLREASQRE 120
           EPRDEVQIYTWKDATLRELTDL VKEVAPEARRRNAKLSFALVYPDRHGRFV+R      
Sbjct: 61  EPRDEVQIYTWKDATLRELTDL-VKEVAPEARRRNAKLSFALVYPDRHGRFVVR------ 120

Query: 121 LTSIWHELLSMMKEYEVGKTFSFGNGRLDDSLALAELGFQIGDYLDVAIV 171
                          EVGKTFSFGNGR DD+LALAELGFQIGDYLDVAI+
Sbjct: 121 ---------------EVGKTFSFGNGRSDDNLALAELGFQIGDYLDVAII 148

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BLAST of Clc05G02650 vs. NCBI nr
Match: XP_022974173.1 (histone deacetylase complex subunit SAP18-like [Cucurbita maxima])

HSP 1 Score: 273.1 bits (697), Expect = 1.6e-69
Identity = 141/170 (82.94%), Postives = 144/170 (84.71%), Query Frame = 0


Query: 1   MAGETEAPRRNYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 60
           MAGE EAPRR YGA PRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK
Sbjct: 24  MAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 83

Query: 61  EPRDEVQIYTWKDATLRELTDLVVKEVAPEARRRNAKLSFALVYPDRHGRFVLREASQRE 120
           EPRDEVQIYTWKDATLRELTDL VKEVAPEARRRNAKLSFALVYPDRHGRFV+R      
Sbjct: 84  EPRDEVQIYTWKDATLRELTDL-VKEVAPEARRRNAKLSFALVYPDRHGRFVVR------ 143

Query: 121 LTSIWHELLSMMKEYEVGKTFSFGNGRLDDSLALAELGFQIGDYLDVAIV 171
                          EVGKTFSFGNGR DD+LALAELGFQIGDYLDVAI+
Sbjct: 144 ---------------EVGKTFSFGNGRSDDNLALAELGFQIGDYLDVAII 171

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BLAST of Clc05G02650 vs. ExPASy Swiss-Prot
Match: O64644 (Histone deacetylase complex subunit SAP18 OS=Arabidopsis thaliana OX=3702 GN=At2g45640 PE=1 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.0e-42
Identity = 99/171 (57.89%), Postives = 115/171 (67.25%), Query Frame = 0


Query: 6   EAPRRNYGALPRAP------HAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRG 65
           EA RR  G  P  P        PPRP+ EPVDREKTCPLLLRVFTK G HH +ED+AVRG
Sbjct: 3   EAARRQGGGRPLPPPPRGVNQQPPRPKPEPVDREKTCPLLLRVFTKSGGHHTSEDYAVRG 62

Query: 66  KEPRDEVQIYTWKDATLRELTDLVVKEVAPEARRRNAKLSFALVYPDRHGRFVLREASQR 125
           KEP+DEVQIYTWKDA+LRELTDL VKEV+  ARRRNA+LSFA VYP+  G + +R     
Sbjct: 63  KEPKDEVQIYTWKDASLRELTDL-VKEVSVAARRRNARLSFAFVYPNNKGGYNVR----- 122

Query: 126 ELTSIWHELLSMMKEYEVGKTFSFGNGRL-DDSLALAELGFQIGDYLDVAI 170
                           EVG+T ++ N +  DDS  L+EL F+IGDYLDVAI
Sbjct: 123 ----------------EVGETMAYPNRKQPDDSKTLSELPFEIGDYLDVAI 151

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BLAST of Clc05G02650 vs. ExPASy Swiss-Prot
Match: Q3T022 (Histone deacetylase complex subunit SAP18 OS=Bos taurus OX=9913 GN=SAP18 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.8e-24
Identity = 67/142 (47.18%), Postives = 80/142 (56.34%), Query Frame = 0


Query: 28  EPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVVKEV 87
           +P+DREKTCPLLLRVFT     H   D   RG  P  E+QIYTW DATL+ELT L VKEV
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSL-VKEV 77

Query: 88  APEARRRNAKLSFALVYPDRHGRFVLREASQRELTSIWHELLSMMKEYEVGKTFSFGNGR 147
            PEAR++    +FA+V+ D      L+    R                E+G T S G   
Sbjct: 78  YPEARKKGTHFNFAIVFTD------LKRPGYR--------------VKEIGSTMS-GRKG 137

Query: 148 LDDSLALAELGFQIGDYLDVAI 170
            DDS+ L    FQIGDYLD+AI
Sbjct: 138 TDDSMTLQSQKFQIGDYLDIAI 137

[Close]

BLAST of Clc05G02650 vs. ExPASy Swiss-Prot
Match: O55128 (Histone deacetylase complex subunit SAP18 OS=Mus musculus OX=10090 GN=Sap18 PE=1 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.7e-24
Identity = 67/142 (47.18%), Postives = 80/142 (56.34%), Query Frame = 0


Query: 28  EPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVVKEV 87
           +P+DREKTCPLLLRVFT     H   D   RG  P  E+QIYTW DATL+ELT L VKEV
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSL-VKEV 77

Query: 88  APEARRRNAKLSFALVYPDRHGRFVLREASQRELTSIWHELLSMMKEYEVGKTFSFGNGR 147
            PEAR++    +FA+V+ D      L+    R                E+G T S G   
Sbjct: 78  YPEARKKGTHFNFAIVFMD------LKRPGYR--------------VKEIGSTMS-GRKG 137

Query: 148 LDDSLALAELGFQIGDYLDVAI 170
            DDS+ L    FQIGDYLD+AI
Sbjct: 138 TDDSMTLQSQKFQIGDYLDIAI 137

[Close]

BLAST of Clc05G02650 vs. ExPASy Swiss-Prot
Match: O00422 (Histone deacetylase complex subunit SAP18 OS=Homo sapiens OX=9606 GN=SAP18 PE=1 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 4.8e-24
Identity = 67/142 (47.18%), Postives = 80/142 (56.34%), Query Frame = 0


Query: 28  EPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVVKEV 87
           +P+DREKTCPLLLRVFT     H   D   RG  P  E+QIYTW DATL+ELT L VKEV
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSL-VKEV 77

Query: 88  APEARRRNAKLSFALVYPDRHGRFVLREASQRELTSIWHELLSMMKEYEVGKTFSFGNGR 147
            PEAR++    +FA+V+ D     V R                  +  E+G T S G   
Sbjct: 78  YPEARKKGTHFNFAIVFTD-----VKRPG---------------YRVKEIGSTMS-GRKG 137

Query: 148 LDDSLALAELGFQIGDYLDVAI 170
            DDS+ L    FQIGDYLD+AI
Sbjct: 138 TDDSMTLQSQKFQIGDYLDIAI 137

[Close]

BLAST of Clc05G02650 vs. ExPASy Swiss-Prot
Match: Q5RDT5 (Histone deacetylase complex subunit SAP18 OS=Pongo abelii OX=9601 GN=SAP18 PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 4.8e-24
Identity = 67/142 (47.18%), Postives = 80/142 (56.34%), Query Frame = 0


Query: 28  EPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVVKEV 87
           +P+DREKTCPLLLRVFT     H   D   RG  P  E+QIYTW DATL+ELT L VKEV
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSL-VKEV 77

Query: 88  APEARRRNAKLSFALVYPDRHGRFVLREASQRELTSIWHELLSMMKEYEVGKTFSFGNGR 147
            PEAR++    +FA+V+ D     V R                  +  E+G T S G   
Sbjct: 78  YPEARKKGTHFNFAIVFTD-----VKRPG---------------YRVKEIGSTMS-GRKG 137

Query: 148 LDDSLALAELGFQIGDYLDVAI 170
            DDS+ L    FQIGDYLD+AI
Sbjct: 138 TDDSMTLQSQKFQIGDYLDIAI 137

[Close]

BLAST of Clc05G02650 vs. ExPASy TrEMBL
Match: A0A5A7U0S8 (Histone deacetylase complex subunit SAP18 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G002350 PE=3 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 9.3e-71
Identity = 142/170 (83.53%), Postives = 143/170 (84.12%), Query Frame = 0


Query: 1   MAGETEAPRRNYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 60
           MAGE EAPRR YGA PRA HAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK
Sbjct: 1   MAGEAEAPRRAYGAPPRATHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 60

Query: 61  EPRDEVQIYTWKDATLRELTDLVVKEVAPEARRRNAKLSFALVYPDRHGRFVLREASQRE 120
           EPRDEVQIYTWKDATLRELTDLVVKEVAPEARRRNAKLSFALVYPDRHGRFVLR      
Sbjct: 61  EPRDEVQIYTWKDATLRELTDLVVKEVAPEARRRNAKLSFALVYPDRHGRFVLR------ 120

Query: 121 LTSIWHELLSMMKEYEVGKTFSFGNGRLDDSLALAELGFQIGDYLDVAIV 171
                          EVGKTFSFGN RLDDSLAL ELGFQIGDYLDVAI+
Sbjct: 121 ---------------EVGKTFSFGNRRLDDSLALGELGFQIGDYLDVAII 149

[Close]

BLAST of Clc05G02650 vs. ExPASy TrEMBL
Match: A0A6J1IFF7 (histone deacetylase complex subunit SAP18-like OS=Cucurbita maxima OX=3661 GN=LOC111472759 PE=3 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 7.9e-70
Identity = 141/170 (82.94%), Postives = 144/170 (84.71%), Query Frame = 0


Query: 1   MAGETEAPRRNYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 60
           MAGE EAPRR YGA PRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK
Sbjct: 24  MAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 83

Query: 61  EPRDEVQIYTWKDATLRELTDLVVKEVAPEARRRNAKLSFALVYPDRHGRFVLREASQRE 120
           EPRDEVQIYTWKDATLRELTDL VKEVAPEARRRNAKLSFALVYPDRHGRFV+R      
Sbjct: 84  EPRDEVQIYTWKDATLRELTDL-VKEVAPEARRRNAKLSFALVYPDRHGRFVVR------ 143

Query: 121 LTSIWHELLSMMKEYEVGKTFSFGNGRLDDSLALAELGFQIGDYLDVAIV 171
                          EVGKTFSFGNGR DD+LALAELGFQIGDYLDVAI+
Sbjct: 144 ---------------EVGKTFSFGNGRSDDNLALAELGFQIGDYLDVAII 171

[Close]

BLAST of Clc05G02650 vs. ExPASy TrEMBL
Match: A0A6J1FXI8 (histone deacetylase complex subunit SAP18-like OS=Cucurbita moschata OX=3662 GN=LOC111448519 PE=3 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 7.9e-70
Identity = 141/170 (82.94%), Postives = 144/170 (84.71%), Query Frame = 0


Query: 1   MAGETEAPRRNYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 60
           MAGE EAPRR YGA PRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK
Sbjct: 24  MAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 83

Query: 61  EPRDEVQIYTWKDATLRELTDLVVKEVAPEARRRNAKLSFALVYPDRHGRFVLREASQRE 120
           EPRDEVQIYTWKDATLRELTDL VKEVAPEARRRNAKLSFALVYPDRHGRFV+R      
Sbjct: 84  EPRDEVQIYTWKDATLRELTDL-VKEVAPEARRRNAKLSFALVYPDRHGRFVVR------ 143

Query: 121 LTSIWHELLSMMKEYEVGKTFSFGNGRLDDSLALAELGFQIGDYLDVAIV 171
                          EVGKTFSFGNGR DD+LALAELGFQIGDYLDVAI+
Sbjct: 144 ---------------EVGKTFSFGNGRSDDNLALAELGFQIGDYLDVAII 171

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BLAST of Clc05G02650 vs. ExPASy TrEMBL
Match: A0A6J1D024 (histone deacetylase complex subunit SAP18 OS=Momordica charantia OX=3673 GN=LOC111016339 PE=3 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 3.9e-69
Identity = 139/170 (81.76%), Postives = 142/170 (83.53%), Query Frame = 0


Query: 1   MAGETEAPRRNYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 60
           MAGE EAPRR YGA PR PH PPRPRLEPVDREKTCPLLLRVFTK+G HHFNEDFAVRGK
Sbjct: 1   MAGEAEAPRRAYGAPPRGPHVPPRPRLEPVDREKTCPLLLRVFTKVGGHHFNEDFAVRGK 60

Query: 61  EPRDEVQIYTWKDATLRELTDLVVKEVAPEARRRNAKLSFALVYPDRHGRFVLREASQRE 120
           EPRDEVQIYTWKDATLRELTDL VKEVAPEARRRNAKLSFALVYPDRHGRFV+R      
Sbjct: 61  EPRDEVQIYTWKDATLRELTDL-VKEVAPEARRRNAKLSFALVYPDRHGRFVVR------ 120

Query: 121 LTSIWHELLSMMKEYEVGKTFSFGNGRLDDSLALAELGFQIGDYLDVAIV 171
                          EVGKTFSFGNGRLDDSLALAELGFQIGDYLDVAI+
Sbjct: 121 ---------------EVGKTFSFGNGRLDDSLALAELGFQIGDYLDVAIL 148

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BLAST of Clc05G02650 vs. ExPASy TrEMBL
Match: A0A5D3D2K7 (Histone deacetylase complex subunit SAP18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G004240 PE=3 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 6.7e-69
Identity = 141/170 (82.94%), Postives = 142/170 (83.53%), Query Frame = 0


Query: 1   MAGETEAPRRNYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 60
           MAGE EAPRR YGA PRA HAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK
Sbjct: 1   MAGEAEAPRRAYGAPPRATHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 60

Query: 61  EPRDEVQIYTWKDATLRELTDLVVKEVAPEARRRNAKLSFALVYPDRHGRFVLREASQRE 120
           EPRDEVQIYTWKDATLRELTDL VKEVAPEARRRNAKLSFALVYPDRHGRFVLR      
Sbjct: 61  EPRDEVQIYTWKDATLRELTDL-VKEVAPEARRRNAKLSFALVYPDRHGRFVLR------ 120

Query: 121 LTSIWHELLSMMKEYEVGKTFSFGNGRLDDSLALAELGFQIGDYLDVAIV 171
                          EVGKTFSFGN RLDDSLAL ELGFQIGDYLDVAI+
Sbjct: 121 ---------------EVGKTFSFGNRRLDDSLALGELGFQIGDYLDVAII 148

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BLAST of Clc05G02650 vs. TAIR 10
Match: AT2G45640.1 (SIN3 associated polypeptide P18 )

HSP 1 Score: 174.5 bits (441), Expect = 7.4e-44
Identity = 99/171 (57.89%), Postives = 115/171 (67.25%), Query Frame = 0


Query: 6   EAPRRNYGALPRAP------HAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRG 65
           EA RR  G  P  P        PPRP+ EPVDREKTCPLLLRVFTK G HH +ED+AVRG
Sbjct: 3   EAARRQGGGRPLPPPPRGVNQQPPRPKPEPVDREKTCPLLLRVFTKSGGHHTSEDYAVRG 62

Query: 66  KEPRDEVQIYTWKDATLRELTDLVVKEVAPEARRRNAKLSFALVYPDRHGRFVLREASQR 125
           KEP+DEVQIYTWKDA+LRELTDL VKEV+  ARRRNA+LSFA VYP+  G + +R     
Sbjct: 63  KEPKDEVQIYTWKDASLRELTDL-VKEVSVAARRRNARLSFAFVYPNNKGGYNVR----- 122

Query: 126 ELTSIWHELLSMMKEYEVGKTFSFGNGRL-DDSLALAELGFQIGDYLDVAI 170
                           EVG+T ++ N +  DDS  L+EL F+IGDYLDVAI
Sbjct: 123 ----------------EVGETMAYPNRKQPDDSKTLSELPFEIGDYLDVAI 151

[Close]

BLAST of Clc05G02650 vs. TAIR 10
Match: AT2G45640.2 (SIN3 associated polypeptide P18 )

HSP 1 Score: 172.2 bits (435), Expect = 3.7e-43
Identity = 98/171 (57.31%), Postives = 112/171 (65.50%), Query Frame = 0


Query: 6   EAPRRNYGALPRAP------HAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRG 65
           EA RR  G  P  P        PPRP+ EPVDREKTCPLLLRVFTK G HH +ED+AVRG
Sbjct: 3   EAARRQGGGRPLPPPPRGVNQQPPRPKPEPVDREKTCPLLLRVFTKSGGHHTSEDYAVRG 62

Query: 66  KEPRDEVQIYTWKDATLRELTDLVVKEVAPEARRRNAKLSFALVYPDRHGRFVLREASQR 125
           KEP+DEVQIYTWKDA+LRELTDL VKEV+  ARRRNA+LSFA VYP+  G          
Sbjct: 63  KEPKDEVQIYTWKDASLRELTDL-VKEVSVAARRRNARLSFAFVYPNNKG---------- 122

Query: 126 ELTSIWHELLSMMKEYEVGKTFSFGNGRL-DDSLALAELGFQIGDYLDVAI 170
                          Y VG+T ++ N +  DDS  L+EL F+IGDYLDVAI
Sbjct: 123 --------------GYNVGETMAYPNRKQPDDSKTLSELPFEIGDYLDVAI 148

The following BLAST results are available for this feature:

BLAST of Clc05G02650 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0049010.1	1.9e-70	83.53	histone deacetylase complex subunit SAP18 [Cucumis melo var. makuwa]	[more]
XP_038879427.1	2.5e-70	84.12	histone deacetylase complex subunit SAP18 [Benincasa hispida]	[more]
XP_022943948.1	1.6e-69	82.94	histone deacetylase complex subunit SAP18-like [Cucurbita moschata] >KAG6597180....	[more]
XP_023538738.1	1.6e-69	82.94	histone deacetylase complex subunit SAP18 [Cucurbita pepo subsp. pepo]	[more]
XP_022974173.1	1.6e-69	82.94	histone deacetylase complex subunit SAP18-like [Cucurbita maxima]	[more]

BLAST of Clc05G02650 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O64644	1.0e-42	57.89	Histone deacetylase complex subunit SAP18 OS=Arabidopsis thaliana OX=3702 GN=At2...	[more]
Q3T022	2.8e-24	47.18	Histone deacetylase complex subunit SAP18 OS=Bos taurus OX=9913 GN=SAP18 PE=2 SV...	[more]
O55128	3.7e-24	47.18	Histone deacetylase complex subunit SAP18 OS=Mus musculus OX=10090 GN=Sap18 PE=1...	[more]
O00422	4.8e-24	47.18	Histone deacetylase complex subunit SAP18 OS=Homo sapiens OX=9606 GN=SAP18 PE=1 ...	[more]
Q5RDT5	4.8e-24	47.18	Histone deacetylase complex subunit SAP18 OS=Pongo abelii OX=9601 GN=SAP18 PE=2 ...	[more]

BLAST of Clc05G02650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U0S8	9.3e-71	83.53	Histone deacetylase complex subunit SAP18 OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A6J1IFF7	7.9e-70	82.94	histone deacetylase complex subunit SAP18-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1FXI8	7.9e-70	82.94	histone deacetylase complex subunit SAP18-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1D024	3.9e-69	81.76	histone deacetylase complex subunit SAP18 OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A5D3D2K7	6.7e-69	82.94	Histone deacetylase complex subunit SAP18 OS=Cucumis melo var. makuwa OX=1194695...	[more]

BLAST of Clc05G02650 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G45640.1	7.4e-44	57.89	SIN3 associated polypeptide P18	[more]
AT2G45640.2	3.7e-43	57.31	SIN3 associated polypeptide P18	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR042534	Sin3 associated polypeptide p18 superfamily	GENE3D	3.10.20.550	ASAP complex, SAP18 subunit	coord: 20..170 e-value: 5.2E-40 score: 138.3
IPR010516	Sin3 associated polypeptide p18	PFAM	PF06487	SAP18	coord: 29..169 e-value: 2.4E-35 score: 121.8
IPR010516	Sin3 associated polypeptide p18	PANTHER	PTHR13082	SAP18	coord: 16..115
IPR010516	Sin3 associated polypeptide p18	PANTHER	PTHR13082	SAP18	coord: 137..170
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	PANTHER	PTHR13082:SF4	DEACETYLASE COMPLEX SUBUNIT SAP18, PUTATIVE-RELATED	coord: 16..115
None	No IPR available	PANTHER	PTHR13082:SF4	DEACETYLASE COMPLEX SUBUNIT SAP18, PUTATIVE-RELATED	coord: 137..170

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc05G02650.2	Clc05G02650.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045892	negative regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003714	transcription corepressor activity