Clc05G01080 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc05G01080
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Krueppel-like factor
Location	ClcChr05: 743867 .. 744424 (+)
RNA-Seq Expression	Clc05G01080
Synteny	Clc05G01080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGAAGAGCAAAAAGACCCTTTTAAGGGAGTGGACTGGAAAGCCGTGGGTGGGGATATGCAGAAAAATCCCAGCGCTACAAACATTATAAAGAAAAGGCGTCCAACAAAAATTAGGCAAATTCCAGATTATTATTTTCTTCCTAGAAGATCCCTTCCTTCTGCCATTGCATTCTATGGGGCCTGTATTGCAGGTGGAATTGGTGCTGGTATGCTGGTGGAGATCTGGATAAATGATAAAGTTAAAAGTAAGTTCTGAATATGGGTCTAGATTTTTTCAATTACTGTTTGATTTCACACTTTTAAACACGATTTGAATAACCATGAAATTTTATTTTAAAAGATTAAAAGCTTTTGAAAGTGACAAAAGTAATTTTAACTATTTTAAGCTTAACGTCTGCGTAAGCCTGCCAATTTCTACCAATTTCTTTTTTGATATCTCTCTGCTTTTCTTTTTAATGTATATCTATGAGAGATAAGATTGATTGATTTTTAATTTTCCTTCCTGATGTGTTCTTAAGAGGATGGAGGTGTCATCTGGGAGTTTGACAAGTAG

mRNA sequence

ATGGGAGAAGAGCAAAAAGACCCTTTTAAGGGAGTGGACTGGAAAGCCGTGGGTGGGGATATGCAGAAAAATCCCAGCGCTACAAACATTATAAAGAAAAGGCGTCCAACAAAAATTAGGCAAATTCCAGATTATTATTTTCTTCCTAGAAGATCCCTTCCTTCTGCCATTGCATTCTATGGGGCCTGTATTGCAGGTGGAATTGGTGCTGGTATGCTGGTGGAGATCTGGATAAATGATAAAGTTAAAAAGGATGGAGGTGTCATCTGGGAGTTTGACAAGTAG

Coding sequence (CDS)

ATGGGAGAAGAGCAAAAAGACCCTTTTAAGGGAGTGGACTGGAAAGCCGTGGGTGGGGATATGCAGAAAAATCCCAGCGCTACAAACATTATAAAGAAAAGGCGTCCAACAAAAATTAGGCAAATTCCAGATTATTATTTTCTTCCTAGAAGATCCCTTCCTTCTGCCATTGCATTCTATGGGGCCTGTATTGCAGGTGGAATTGGTGCTGGTATGCTGGTGGAGATCTGGATAAATGATAAAGTTAAAAAGGATGGAGGTGTCATCTGGGAGTTTGACAAGTAG

Protein sequence

MGEEQKDPFKGVDWKAVGGDMQKNPSATNIIKKRRPTKIRQIPDYYFLPRRSLPSAIAFYGACIAGGIGAGMLVEIWINDKVKKDGGVIWEFDK

Homology

[Close]

BLAST of Clc05G01080 vs. NCBI nr
Match: XP_004133805.1 (uncharacterized protein LOC101207877 [Cucumis sativus] >KGN56411.1 hypothetical protein Csa_009724 [Cucumis sativus])

HSP 1 Score: 185.7 bits (470), Expect = 1.9e-43
Identity = 86/93 (92.47%), Postives = 90/93 (96.77%), Query Frame = 0


Query: 2   GEEQKDPFKGVDWKAVGGDMQKNPSATNIIKKRRPTKIRQIPDYYFLPRRSLPSAIAFYG 61
           G EQKDP KGVDWKAVGGDMQK+PS+TNIIKKRRPTKIRQIPDYYFLPRRSLPS +AFYG
Sbjct: 11  GVEQKDPLKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRSLPSVMAFYG 70

Query: 62  ACIAGGIGAGMLVEIWINDKVKKDGGVIWEFDK 95
           ACIAGGIGAGMLVEIWINDK+KKDGGVIWEFDK
Sbjct: 71  ACIAGGIGAGMLVEIWINDKIKKDGGVIWEFDK 103

[Close]

BLAST of Clc05G01080 vs. NCBI nr
Match: XP_023522177.1 (uncharacterized protein LOC111786056 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 183.7 bits (465), Expect = 7.2e-43
Identity = 83/94 (88.30%), Postives = 90/94 (95.74%), Query Frame = 0


Query: 1  MGEEQKDPFKGVDWKAVGGDMQKNPSATNIIKKRRPTKIRQIPDYYFLPRRSLPSAIAFY 60
          M EE KDPFKGVDWKAVGGDMQK+PS+ NI+KKRRPTK+RQIP+YYFLPRRSLPS +AFY
Sbjct: 1  MAEEAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLPSVLAFY 60

Query: 61 GACIAGGIGAGMLVEIWINDKVKKDGGVIWEFDK 95
          GACIAGGIGAGMLVEIWINDKVKKDGGV+WEFDK
Sbjct: 61 GACIAGGIGAGMLVEIWINDKVKKDGGVVWEFDK 94

[Close]

BLAST of Clc05G01080 vs. NCBI nr
Match: XP_008437869.1 (PREDICTED: uncharacterized protein LOC103483172 [Cucumis melo] >KAA0048876.1 uncharacterized protein E6C27_scaffold171G00910 [Cucumis melo var. makuwa] >TYK20827.1 uncharacterized protein E5676_scaffold291G00890 [Cucumis melo var. makuwa])

HSP 1 Score: 182.6 bits (462), Expect = 1.6e-42
Identity = 84/93 (90.32%), Postives = 89/93 (95.70%), Query Frame = 0


Query: 2   GEEQKDPFKGVDWKAVGGDMQKNPSATNIIKKRRPTKIRQIPDYYFLPRRSLPSAIAFYG 61
           G EQKDPFKGVDWKAVGGDMQK+PS+TNIIKKRRPTKIRQIPDYYFLPRR LP  +AFYG
Sbjct: 11  GVEQKDPFKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRPLPYVMAFYG 70

Query: 62  ACIAGGIGAGMLVEIWINDKVKKDGGVIWEFDK 95
           ACIAGGIGAGMLVE+WINDK+KKDGGVIWEFDK
Sbjct: 71  ACIAGGIGAGMLVEMWINDKIKKDGGVIWEFDK 103

[Close]

BLAST of Clc05G01080 vs. NCBI nr
Match: XP_022942020.1 (uncharacterized protein LOC111447184 [Cucurbita moschata] >KAG6597065.1 hypothetical protein SDJN03_10245, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028536.1 hypothetical protein SDJN02_09717 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 181.4 bits (459), Expect = 3.6e-42
Identity = 82/94 (87.23%), Postives = 89/94 (94.68%), Query Frame = 0


Query: 1  MGEEQKDPFKGVDWKAVGGDMQKNPSATNIIKKRRPTKIRQIPDYYFLPRRSLPSAIAFY 60
          M EE KDPFKGVDWKAVGGDMQK+PS+ NI+KKRRPTK+RQIP+YYFLPRRSLPS +AFY
Sbjct: 1  MAEEAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLPSVLAFY 60

Query: 61 GACIAGGIGAGMLVEIWINDKVKKDGGVIWEFDK 95
          GACIAGGIGAGMLVEIWI DKVKKDGGV+WEFDK
Sbjct: 61 GACIAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK 94

[Close]

BLAST of Clc05G01080 vs. NCBI nr
Match: XP_022975548.1 (uncharacterized protein LOC111475080 [Cucurbita maxima])

HSP 1 Score: 178.3 bits (451), Expect = 3.0e-41
Identity = 81/94 (86.17%), Postives = 88/94 (93.62%), Query Frame = 0


Query: 1  MGEEQKDPFKGVDWKAVGGDMQKNPSATNIIKKRRPTKIRQIPDYYFLPRRSLPSAIAFY 60
          M EE KDPFKGVDWKAVGGDMQK+PS+ NI+KKRRPTK+RQIP+YYFLPRRSL S +AFY
Sbjct: 1  MAEEAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLSSVLAFY 60

Query: 61 GACIAGGIGAGMLVEIWINDKVKKDGGVIWEFDK 95
          GACIAGGIGAGMLVEIWI DKVKKDGGV+WEFDK
Sbjct: 61 GACIAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK 94

[Close]

BLAST of Clc05G01080 vs. ExPASy TrEMBL
Match: A0A0A0L8I7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119440 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 9.2e-44
Identity = 86/93 (92.47%), Postives = 90/93 (96.77%), Query Frame = 0


Query: 2   GEEQKDPFKGVDWKAVGGDMQKNPSATNIIKKRRPTKIRQIPDYYFLPRRSLPSAIAFYG 61
           G EQKDP KGVDWKAVGGDMQK+PS+TNIIKKRRPTKIRQIPDYYFLPRRSLPS +AFYG
Sbjct: 11  GVEQKDPLKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRSLPSVMAFYG 70

Query: 62  ACIAGGIGAGMLVEIWINDKVKKDGGVIWEFDK 95
           ACIAGGIGAGMLVEIWINDK+KKDGGVIWEFDK
Sbjct: 71  ACIAGGIGAGMLVEIWINDKIKKDGGVIWEFDK 103

[Close]

BLAST of Clc05G01080 vs. ExPASy TrEMBL
Match: A0A5D3DB39 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G00890 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 7.8e-43
Identity = 84/93 (90.32%), Postives = 89/93 (95.70%), Query Frame = 0


Query: 2   GEEQKDPFKGVDWKAVGGDMQKNPSATNIIKKRRPTKIRQIPDYYFLPRRSLPSAIAFYG 61
           G EQKDPFKGVDWKAVGGDMQK+PS+TNIIKKRRPTKIRQIPDYYFLPRR LP  +AFYG
Sbjct: 11  GVEQKDPFKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRPLPYVMAFYG 70

Query: 62  ACIAGGIGAGMLVEIWINDKVKKDGGVIWEFDK 95
           ACIAGGIGAGMLVE+WINDK+KKDGGVIWEFDK
Sbjct: 71  ACIAGGIGAGMLVEMWINDKIKKDGGVIWEFDK 103

[Close]

BLAST of Clc05G01080 vs. ExPASy TrEMBL
Match: A0A1S3AV52 (uncharacterized protein LOC103483172 OS=Cucumis melo OX=3656 GN=LOC103483172 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 7.8e-43
Identity = 84/93 (90.32%), Postives = 89/93 (95.70%), Query Frame = 0


Query: 2   GEEQKDPFKGVDWKAVGGDMQKNPSATNIIKKRRPTKIRQIPDYYFLPRRSLPSAIAFYG 61
           G EQKDPFKGVDWKAVGGDMQK+PS+TNIIKKRRPTKIRQIPDYYFLPRR LP  +AFYG
Sbjct: 11  GVEQKDPFKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRPLPYVMAFYG 70

Query: 62  ACIAGGIGAGMLVEIWINDKVKKDGGVIWEFDK 95
           ACIAGGIGAGMLVE+WINDK+KKDGGVIWEFDK
Sbjct: 71  ACIAGGIGAGMLVEMWINDKIKKDGGVIWEFDK 103

[Close]

BLAST of Clc05G01080 vs. ExPASy TrEMBL
Match: A0A6J1FVE8 (uncharacterized protein LOC111447184 OS=Cucurbita moschata OX=3662 GN=LOC111447184 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.7e-42
Identity = 82/94 (87.23%), Postives = 89/94 (94.68%), Query Frame = 0


Query: 1  MGEEQKDPFKGVDWKAVGGDMQKNPSATNIIKKRRPTKIRQIPDYYFLPRRSLPSAIAFY 60
          M EE KDPFKGVDWKAVGGDMQK+PS+ NI+KKRRPTK+RQIP+YYFLPRRSLPS +AFY
Sbjct: 1  MAEEAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLPSVLAFY 60

Query: 61 GACIAGGIGAGMLVEIWINDKVKKDGGVIWEFDK 95
          GACIAGGIGAGMLVEIWI DKVKKDGGV+WEFDK
Sbjct: 61 GACIAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK 94

[Close]

BLAST of Clc05G01080 vs. ExPASy TrEMBL
Match: A0A6J1IJJ2 (uncharacterized protein LOC111475080 OS=Cucurbita maxima OX=3661 GN=LOC111475080 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.5e-41
Identity = 81/94 (86.17%), Postives = 88/94 (93.62%), Query Frame = 0


Query: 1  MGEEQKDPFKGVDWKAVGGDMQKNPSATNIIKKRRPTKIRQIPDYYFLPRRSLPSAIAFY 60
          M EE KDPFKGVDWKAVGGDMQK+PS+ NI+KKRRPTK+RQIP+YYFLPRRSL S +AFY
Sbjct: 1  MAEEAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLSSVLAFY 60

Query: 61 GACIAGGIGAGMLVEIWINDKVKKDGGVIWEFDK 95
          GACIAGGIGAGMLVEIWI DKVKKDGGV+WEFDK
Sbjct: 61 GACIAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK 94

[Close]

BLAST of Clc05G01080 vs. TAIR 10
Match: AT5G16950.1 (unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 94.7 bits (234), Expect = 4.1e-20
Identity = 46/97 (47.42%), Postives = 63/97 (64.95%), Query Frame = 0


Query: 3  EEQKDPFKGVDWKAVGGDMQKNPSATNI-----IKKRRPTKIRQIPDYYFLPRRSLPSAI 62
          E  KDP+KG +W     +  K P+ + +      +K+ P  +    + YFLPR+  P A+
Sbjct: 4  EGAKDPWKGEEW-GTENEKTKKPTTSGVKTVTRARKQIPRGLEDKYEAYFLPRKPWPRAL 63

Query: 63 AFYGACIAGGIGAGMLVEIWINDKVKKDGGVIWEFDK 95
          A+YG+ I GGIGAGM++E WIN KVK+DGGVIWEFDK
Sbjct: 64 AYYGSFILGGIGAGMVIEAWINKKVKEDGGVIWEFDK 99

The following BLAST results are available for this feature:

BLAST of Clc05G01080 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004133805.1	1.9e-43	92.47	uncharacterized protein LOC101207877 [Cucumis sativus] >KGN56411.1 hypothetical ...	[more]
XP_023522177.1	7.2e-43	88.30	uncharacterized protein LOC111786056 [Cucurbita pepo subsp. pepo]	[more]
XP_008437869.1	1.6e-42	90.32	PREDICTED: uncharacterized protein LOC103483172 [Cucumis melo] >KAA0048876.1 unc...	[more]
XP_022942020.1	3.6e-42	87.23	uncharacterized protein LOC111447184 [Cucurbita moschata] >KAG6597065.1 hypothet...	[more]
XP_022975548.1	3.0e-41	86.17	uncharacterized protein LOC111475080 [Cucurbita maxima]	[more]

BLAST of Clc05G01080 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc05G01080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8I7	9.2e-44	92.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119440 PE=4 SV=1	[more]
A0A5D3DB39	7.8e-43	90.32	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3AV52	7.8e-43	90.32	uncharacterized protein LOC103483172 OS=Cucumis melo OX=3656 GN=LOC103483172 PE=...	[more]
A0A6J1FVE8	1.7e-42	87.23	uncharacterized protein LOC111447184 OS=Cucurbita moschata OX=3662 GN=LOC1114471...	[more]
A0A6J1IJJ2	1.5e-41	86.17	uncharacterized protein LOC111475080 OS=Cucurbita maxima OX=3661 GN=LOC111475080...	[more]

BLAST of Clc05G01080 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G16950.1	4.1e-20	47.42	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36797	OS01G0258600 PROTEIN	coord: 3..94
None	No IPR available	PANTHER	PTHR36797:SF3	OS01G0258600 PROTEIN	coord: 3..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc05G01080.2	Clc05G01080.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane