Clc05G01000 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc05G01000
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	(1->3)-beta-glucan endohydrolase
Location	ClcChr05: 699086 .. 699686 (-)
RNA-Seq Expression	Clc05G01000
Synteny	Clc05G01000

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAAGCGTGTACTCGTATAAGGAGAAAAATGTGAGTCAAAGCTATGTCATGTTTCGTGCCGCAAACCCGATGGTTCGTGATGGAACATTGGACTACTACAATCGATTTGATATAATGGTGGATGCATTTTATGCTGCCATGGAAAAGTTAGAGGTGAAAGACATGAATGTGGGAAAACTGGGTGGCCTAATCGTAATTACAAGGCAGCAACGAGCGTTGCAGCGGAGTACAACAAAAAATTGAAGGCACATATAGACACTAGGAAGGGGACACCAAGGAAGCCCAATGTTCATTTGTAAGGATTCATAAGAAGCTTGTTTGATGAAAAACAAAGTGTTGATGGGGAGTTGGATGTTATGGGTTGTTTAATGATGTGGACACTAGGCCCCTTTATCCTTTGTTTTGACTCATTGCTTATTAATTTATTTGCCCATTACAACAATTTGAGCTTTAGATGTCCGTTCTAAACTATAACCACCATTGTATCTAGTGAAATTGTAGGTTACTGTCTACTGTAGGTCAGCCGCCACTTGGAGTTGACAGTCAGCCGACGAATGAAGTCGCAGTAAGTCGTCCGTTTGAAGTCGTCGTTCGATAG

mRNA sequence

ATGGTAAGCGTGTACTCGTATAAGGAGAAAAATGTGAGTCAAAGCTATGTCATGTTTCGTGCCGCAAACCCGATGGTTCGTGATGGAACATTGGACTACTACAATCGATTTGATATAATGGTGGATGCATTTTATGCTGCCATGGAAAAGTTAGAGGTGAAAGACATGAATGTGGGAAAACTGGGTGGCCTAATCGTAATTACAAGGCAGCAACGAGCGTTGCAGCGGAGTCAGCCGCCACTTGGAGTTGACAGTCAGCCGACGAATGAAGTCGCAGTAAGTCGTCCGTTTGAAGTCGTCGTTCGATAG

Coding sequence (CDS)

ATGGTAAGCGTGTACTCGTATAAGGAGAAAAATGTGAGTCAAAGCTATGTCATGTTTCGTGCCGCAAACCCGATGGTTCGTGATGGAACATTGGACTACTACAATCGATTTGATATAATGGTGGATGCATTTTATGCTGCCATGGAAAAGTTAGAGGTGAAAGACATGAATGTGGGAAAACTGGGTGGCCTAATCGTAATTACAAGGCAGCAACGAGCGTTGCAGCGGAGTCAGCCGCCACTTGGAGTTGACAGTCAGCCGACGAATGAAGTCGCAGTAAGTCGTCCGTTTGAAGTCGTCGTTCGATAG

Protein sequence

MVSVYSYKEKNVSQSYVMFRAANPMVRDGTLDYYNRFDIMVDAFYAAMEKLEVKDMNVGKLGGLIVITRQQRALQRSQPPLGVDSQPTNEVAVSRPFEVVVR

Homology

[Close]

BLAST of Clc05G01000 vs. NCBI nr
Match: XP_020081623.1 (lichenase-like, partial [Ananas comosus])

HSP 1 Score: 63.2 bits (152), Expect = 1.5e-06
Identity = 27/47 (57.45%), Postives = 36/47 (76.60%), Query Frame = 0


Query: 5   YSYKEKNVSQSYVMFRAANPMVRDGTLDYYNRFDIMVDAFYAAMEKL 52
           Y+   +++S  Y +F A +P+VRDG LDYYN FD MVDAFYAA+EK+
Sbjct: 184 YAADPEHISLEYALFTATSPVVRDGNLDYYNLFDAMVDAFYAALEKI 230

[Close]

BLAST of Clc05G01000 vs. NCBI nr
Match: CAD1825082.1 (unnamed protein product [Ananas comosus var. bracteatus])

HSP 1 Score: 63.2 bits (152), Expect = 1.5e-06
Identity = 27/47 (57.45%), Postives = 36/47 (76.60%), Query Frame = 0


Query: 5   YSYKEKNVSQSYVMFRAANPMVRDGTLDYYNRFDIMVDAFYAAMEKL 52
           Y+   +++S  Y +F A +P+VRDG LDYYN FD MVDAFYAA+EK+
Sbjct: 181 YAADPEHISLEYALFTATSPVVRDGNLDYYNLFDAMVDAFYAALEKI 227

[Close]

BLAST of Clc05G01000 vs. NCBI nr
Match: XP_020110419.1 (probable glucan endo-1,3-beta-glucosidase BG4 [Ananas comosus])

HSP 1 Score: 63.2 bits (152), Expect = 1.5e-06
Identity = 27/47 (57.45%), Postives = 36/47 (76.60%), Query Frame = 0


Query: 5   YSYKEKNVSQSYVMFRAANPMVRDGTLDYYNRFDIMVDAFYAAMEKL 52
           Y+   +++S  Y +F A +P+VRDG LDYYN FD MVDAFYAA+EK+
Sbjct: 205 YAADPEHISLEYALFTATSPVVRDGNLDYYNLFDAMVDAFYAALEKI 251

[Close]

BLAST of Clc05G01000 vs. NCBI nr
Match: OAY82609.1 (Glucan endo-1,3-beta-glucosidase, basic isoform [Ananas comosus])

HSP 1 Score: 63.2 bits (152), Expect = 1.5e-06
Identity = 27/47 (57.45%), Postives = 36/47 (76.60%), Query Frame = 0


Query: 5   YSYKEKNVSQSYVMFRAANPMVRDGTLDYYNRFDIMVDAFYAAMEKL 52
           Y+   +++S  Y +F A +P+VRDG LDYYN FD MVDAFYAA+EK+
Sbjct: 175 YAADPEHISLEYALFTATSPVVRDGNLDYYNLFDAMVDAFYAALEKI 221

[Close]

BLAST of Clc05G01000 vs. NCBI nr
Match: KAB2618319.1 (glucan endo-1,3-beta-glucosidase GVI [Pyrus ussuriensis x Pyrus communis])

HSP 1 Score: 61.6 bits (148), Expect = 4.5e-06
Identity = 32/63 (50.79%), Postives = 39/63 (61.90%), Query Frame = 0


Query: 1   MVSVYSY-----KEKNVSQSYVMFRAANPMVRDGTLDYYNRFDIMVDAFYAAMEKLEVKD 59
           M++VY Y        NV   Y  F A +P+VRDG+L YYN FD MVDAF+AAMEK    D
Sbjct: 197 MINVYPYFAYASDPTNVRLDYAQFTATSPVVRDGSLSYYNLFDAMVDAFFAAMEKAGGGD 256

[Close]

BLAST of Clc05G01000 vs. ExPASy Swiss-Prot
Match: Q03773 (Glucan endo-1,3-beta-glucosidase OS=Glycine max OX=3847 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 9.4e-07
Identity = 28/63 (44.44%), Postives = 40/63 (63.49%), Query Frame = 0


Query: 1   MVSVYSY-----KEKNVSQSYVMFRAANPMVRDGTLDYYNRFDIMVDAFYAAMEKLEVKD 59
           MV+VYSY       K++S  Y +FR+ + +V+DG+L Y N FD  VDA YAA+EK     
Sbjct: 204 MVNVYSYFAYTANPKDISLDYALFRSPSVVVQDGSLGYRNLFDASVDAVYAALEKAGGGS 263

[Close]

BLAST of Clc05G01000 vs. ExPASy Swiss-Prot
Match: P52400 (Glucan endo-1,3-beta-glucosidase, basic isoform 1 (Fragment) OS=Solanum tuberosum OX=4113 GN=GLUB1 PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 3.3e-04
Identity = 21/46 (45.65%), Postives = 29/46 (63.04%), Query Frame = 0


Query: 5   YSYKEKNVSQSYVMFRAANPMVRDGTLDYYNRFDIMVDAFYAAMEK 51
           YS     +S  Y +F A N +V+DG+  Y N FD M+D+ YAAME+
Sbjct: 182 YSGNPGQISLPYALFTAPNAVVQDGSRQYRNLFDAMLDSVYAAMER 227

[Close]

BLAST of Clc05G01000 vs. ExPASy Swiss-Prot
Match: P52401 (Glucan endo-1,3-beta-glucosidase, basic isoform 2 OS=Solanum tuberosum OX=4113 GN=GLUB2 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 4.4e-04
Identity = 21/46 (45.65%), Postives = 29/46 (63.04%), Query Frame = 0


Query: 5   YSYKEKNVSQSYVMFRAANPMVRDGTLDYYNRFDIMVDAFYAAMEK 51
           YS     +S  Y +F A N +V+DG+  Y N FD M+D+ YAAME+
Sbjct: 208 YSGNPGQISLPYALFTAPNVVVQDGSRQYRNLFDAMLDSVYAAMER 253

[Close]

BLAST of Clc05G01000 vs. ExPASy Swiss-Prot
Match: P52402 (Glucan endo-1,3-beta-glucosidase, basic isoform 3 (Fragment) OS=Solanum tuberosum OX=4113 GN=GLUB3 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 4.4e-04
Identity = 21/46 (45.65%), Postives = 29/46 (63.04%), Query Frame = 0


Query: 5   YSYKEKNVSQSYVMFRAANPMVRDGTLDYYNRFDIMVDAFYAAMEK 51
           YS     +S  Y +F A N +V+DG+  Y N FD M+D+ YAAME+
Sbjct: 173 YSGNPGQISLPYALFTAPNVVVQDGSRQYRNLFDAMLDSVYAAMER 218

[Close]

BLAST of Clc05G01000 vs. ExPASy Swiss-Prot
Match: A7PQW3 (Glucan endo-1,3-beta-glucosidase OS=Vitis vinifera OX=29760 GN=VIT_06s0061g00120 PE=1 SV=2)

HSP 1 Score: 45.4 bits (106), Expect = 4.4e-04
Identity = 19/46 (41.30%), Postives = 30/46 (65.22%), Query Frame = 0


Query: 5   YSYKEKNVSQSYVMFRAANPMVRDGTLDYYNRFDIMVDAFYAAMEK 51
           Y+   +N+   Y +F A+  +V+DG+  Y N FD ++DA YAA+EK
Sbjct: 211 YTGDTQNIRLDYALFTASGVVVQDGSYQYQNLFDALLDALYAALEK 256

[Close]

BLAST of Clc05G01000 vs. ExPASy TrEMBL
Match: A0A6P5EJF7 (lichenase-like OS=Ananas comosus OX=4615 GN=LOC109705304 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 7.5e-07
Identity = 27/47 (57.45%), Postives = 36/47 (76.60%), Query Frame = 0


Query: 5   YSYKEKNVSQSYVMFRAANPMVRDGTLDYYNRFDIMVDAFYAAMEKL 52
           Y+   +++S  Y +F A +P+VRDG LDYYN FD MVDAFYAA+EK+
Sbjct: 184 YAADPEHISLEYALFTATSPVVRDGNLDYYNLFDAMVDAFYAALEKI 230

[Close]

BLAST of Clc05G01000 vs. ExPASy TrEMBL
Match: A0A6P5GR84 (probable glucan endo-1,3-beta-glucosidase BG4 OS=Ananas comosus OX=4615 GN=LOC109725590 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 7.5e-07
Identity = 27/47 (57.45%), Postives = 36/47 (76.60%), Query Frame = 0


Query: 5   YSYKEKNVSQSYVMFRAANPMVRDGTLDYYNRFDIMVDAFYAAMEKL 52
           Y+   +++S  Y +F A +P+VRDG LDYYN FD MVDAFYAA+EK+
Sbjct: 205 YAADPEHISLEYALFTATSPVVRDGNLDYYNLFDAMVDAFYAALEKI 251

[Close]

BLAST of Clc05G01000 vs. ExPASy TrEMBL
Match: A0A199W005 (Glucan endo-1,3-beta-glucosidase, basic isoform OS=Ananas comosus OX=4615 GN=ACMD2_16280 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 7.5e-07
Identity = 27/47 (57.45%), Postives = 36/47 (76.60%), Query Frame = 0


Query: 5   YSYKEKNVSQSYVMFRAANPMVRDGTLDYYNRFDIMVDAFYAAMEKL 52
           Y+   +++S  Y +F A +P+VRDG LDYYN FD MVDAFYAA+EK+
Sbjct: 175 YAADPEHISLEYALFTATSPVVRDGNLDYYNLFDAMVDAFYAALEKI 221

[Close]

BLAST of Clc05G01000 vs. ExPASy TrEMBL
Match: A0A6V7P2M2 (Uncharacterized protein OS=Ananas comosus var. bracteatus OX=296719 GN=CB5_LOCUS8293 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 7.5e-07
Identity = 27/47 (57.45%), Postives = 36/47 (76.60%), Query Frame = 0


Query: 5   YSYKEKNVSQSYVMFRAANPMVRDGTLDYYNRFDIMVDAFYAAMEKL 52
           Y+   +++S  Y +F A +P+VRDG LDYYN FD MVDAFYAA+EK+
Sbjct: 181 YAADPEHISLEYALFTATSPVVRDGNLDYYNLFDAMVDAFYAALEKI 227

[Close]

BLAST of Clc05G01000 vs. ExPASy TrEMBL
Match: A0A5N5GRV7 ((1->3)-beta-glucan endohydrolase OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_014188 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.2e-06
Identity = 32/63 (50.79%), Postives = 39/63 (61.90%), Query Frame = 0


Query: 1   MVSVYSY-----KEKNVSQSYVMFRAANPMVRDGTLDYYNRFDIMVDAFYAAMEKLEVKD 59
           M++VY Y        NV   Y  F A +P+VRDG+L YYN FD MVDAF+AAMEK    D
Sbjct: 197 MINVYPYFAYASDPTNVRLDYAQFTATSPVVRDGSLSYYNLFDAMVDAFFAAMEKAGGGD 256

[Close]

BLAST of Clc05G01000 vs. TAIR 10
Match: AT1G77780.1 (Glycosyl hydrolase superfamily protein )

HSP 1 Score: 45.8 bits (107), Expect = 2.4e-05
Identity = 24/56 (42.86%), Postives = 32/56 (57.14%), Query Frame = 0


Query: 1   MVSVYSY-----KEKNVSQSYVMFRAANPMVRDGTLDYYNRFDIMVDAFYAAMEKL 52
           MV+VY Y        +VS  Y  FR+ +P+V DG   Y N FD  +DAF  A+EK+
Sbjct: 190 MVNVYPYFAYASDPSHVSLEYATFRSTSPVVTDGKYQYTNIFDATLDAFNVALEKI 245

[Close]

BLAST of Clc05G01000 vs. TAIR 10
Match: AT5G20390.1 (Glycosyl hydrolase superfamily protein )

HSP 1 Score: 45.8 bits (107), Expect = 2.4e-05
Identity = 24/61 (39.34%), Postives = 34/61 (55.74%), Query Frame = 0


Query: 1   MVSVYSY-----KEKNVSQSYVMFRAANPMVRDGTLDYYNRFDIMVDAFYAAMEKLEVKD 57
           +V++Y Y        N+   Y +F     +V+DG L Y N FD++ DAF  AMEK  VKD
Sbjct: 200 LVNIYPYFAYAADPINIQLDYAIFNTNKVVVQDGPLGYTNMFDVIFDAFVWAMEKEGVKD 259

[Close]

BLAST of Clc05G01000 vs. TAIR 10
Match: AT1G77790.1 (Glycosyl hydrolase superfamily protein )

HSP 1 Score: 43.9 bits (102), Expect = 9.0e-05
Identity = 21/54 (38.89%), Postives = 32/54 (59.26%), Query Frame = 0


Query: 5   YSYKEKNVSQSYVMFRAANPMVRDGTLDYYNRFDIMVDAFYAAMEKLEVKDMNV 59
           Y+    ++S  Y  F++  P+V DG L Y N F+ MVD F AA+EK+   ++ V
Sbjct: 206 YASDPYHISLDYASFKSNTPVVIDGDLYYNNMFEAMVDGFNAALEKINAANVVV 259

[Close]

BLAST of Clc05G01000 vs. TAIR 10
Match: AT1G33220.1 (Glycosyl hydrolase superfamily protein )

HSP 1 Score: 43.9 bits (102), Expect = 9.0e-05
Identity = 24/61 (39.34%), Postives = 32/61 (52.46%), Query Frame = 0


Query: 1   MVSVYSY-----KEKNVSQSYVMFRAANPMVRDGTLDYYNRFDIMVDAFYAAMEKLEVKD 57
           +V++Y Y        N+   Y  F     +V+DG L Y N FD + DAF  AMEK  VKD
Sbjct: 201 LVNIYPYFPYASDPTNIPLDYATFNTKATVVQDGPLGYSNMFDAIFDAFVWAMEKEGVKD 260

[Close]

BLAST of Clc05G01000 vs. TAIR 10
Match: AT5G20330.1 (beta-1,3-glucanase 4 )

HSP 1 Score: 43.1 bits (100), Expect = 1.5e-04
Identity = 23/61 (37.70%), Postives = 34/61 (55.74%), Query Frame = 0


Query: 1   MVSVYSY-----KEKNVSQSYVMFRAANPMVRDGTLDYYNRFDIMVDAFYAAMEKLEVKD 57
           +V++Y Y        N+   Y  F   + +V+DG+L Y N FD + DAF  AMEK  VK+
Sbjct: 201 LVNIYPYFAYASDPANIRLDYASFNTKSIVVQDGSLGYSNMFDAIFDAFVWAMEKEGVKN 260

The following BLAST results are available for this feature:

BLAST of Clc05G01000 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_020081623.1	1.5e-06	57.45	lichenase-like, partial [Ananas comosus]	[more]
CAD1825082.1	1.5e-06	57.45	unnamed protein product [Ananas comosus var. bracteatus]	[more]
XP_020110419.1	1.5e-06	57.45	probable glucan endo-1,3-beta-glucosidase BG4 [Ananas comosus]	[more]
OAY82609.1	1.5e-06	57.45	Glucan endo-1,3-beta-glucosidase, basic isoform [Ananas comosus]	[more]
KAB2618319.1	4.5e-06	50.79	glucan endo-1,3-beta-glucosidase GVI [Pyrus ussuriensis x Pyrus communis]	[more]

BLAST of Clc05G01000 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q03773	9.4e-07	44.44	Glucan endo-1,3-beta-glucosidase OS=Glycine max OX=3847 PE=1 SV=1	[more]
P52400	3.3e-04	45.65	Glucan endo-1,3-beta-glucosidase, basic isoform 1 (Fragment) OS=Solanum tuberosu...	[more]
P52401	4.4e-04	45.65	Glucan endo-1,3-beta-glucosidase, basic isoform 2 OS=Solanum tuberosum OX=4113 G...	[more]
P52402	4.4e-04	45.65	Glucan endo-1,3-beta-glucosidase, basic isoform 3 (Fragment) OS=Solanum tuberosu...	[more]
A7PQW3	4.4e-04	41.30	Glucan endo-1,3-beta-glucosidase OS=Vitis vinifera OX=29760 GN=VIT_06s0061g00120...	[more]

BLAST of Clc05G01000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6P5EJF7	7.5e-07	57.45	lichenase-like OS=Ananas comosus OX=4615 GN=LOC109705304 PE=3 SV=1	[more]
A0A6P5GR84	7.5e-07	57.45	probable glucan endo-1,3-beta-glucosidase BG4 OS=Ananas comosus OX=4615 GN=LOC10...	[more]
A0A199W005	7.5e-07	57.45	Glucan endo-1,3-beta-glucosidase, basic isoform OS=Ananas comosus OX=4615 GN=ACM...	[more]
A0A6V7P2M2	7.5e-07	57.45	Uncharacterized protein OS=Ananas comosus var. bracteatus OX=296719 GN=CB5_LOCUS...	[more]
A0A5N5GRV7	2.2e-06	50.79	(1->3)-beta-glucan endohydrolase OS=Pyrus ussuriensis x Pyrus communis OX=244845...	[more]

BLAST of Clc05G01000 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G77780.1	2.4e-05	42.86	Glycosyl hydrolase superfamily protein	[more]
AT5G20390.1	2.4e-05	39.34	Glycosyl hydrolase superfamily protein	[more]
AT1G77790.1	9.0e-05	38.89	Glycosyl hydrolase superfamily protein	[more]
AT1G33220.1	9.0e-05	39.34	Glycosyl hydrolase superfamily protein	[more]
AT5G20330.1	1.5e-04	37.70	beta-1,3-glucanase 4	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.20.20.80	Glycosidases	coord: 1..68 e-value: 9.5E-11 score: 43.3
IPR017853	Glycoside hydrolase superfamily	SUPERFAMILY	51445	(Trans)glycosidases	coord: 1..58

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc05G01000.1	Clc05G01000.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
cellular_component	GO:0046658	anchored component of plasma membrane
molecular_function	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds