Clc05G00460 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc05G00460
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	YqgFc domain-containing protein
Location	ClcChr05: 331709 .. 335304 (-)
RNA-Seq Expression	Clc05G00460
Synteny	Clc05G00460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAACGATGTGTGCGCAACGTTTCCAACCCTTTCAGTTTCCGCTGCAGAGCCACAATCTTGTGTCTCCCACCATTTTCTGTCTTCCACCACTCCCTTCCTCCCTATCCCTTCCTCCTCTGCCTCCATCTCCAACCCTAATTTGCAAATGCCACAACCCAATTTCCTCCATTGAACTTCCTCCCAACGCCCTTCGCCGCAAGCTCGACCCTCACTGGAGAGGAGGTTTCAGTCTAGGGGTCGACCTCGGAACCTCTCGCACTGGACTTGCTCTTAGTAAAGGCTTCTCCACTCGTCCTCTTACCGTAATTTTTCTTCATTTTCGCCTCTCTGCGTTTTTCTGTAGCTTGTAATTTCAGCACATTGAACTAATCCACTCTTGTCCTAGATGCTTGCTTTACATTTTTCTGTCTTTCTGCCTACTTTTCTCCTAAATTTAGCGTTATTAACGCAATCATGGTCGATGTCTGGGACATCACTGTTTATAATGTGGCCAACGGCAGACTGCTATTATATTTTCAATTATGTTTTACACAGTCCACCACGCTCTTTTTACTCGGCTGGTTTTATGTTATACATGTATATTGAAATTACAAACGCTTTCCGGCATTAGACTCAATGGTGTGTGTTATCATTCGTTTGGGACTTATGATTTCTGTAGCTGGCTTAGGTTCTGGAGTTGCGAGGACAAAAGCTTGAGGTTAAGCTTATTGAGATTGCTGAACAGGAAGTATATACCTCTCCATCTCTGACGATCTTGCTAATGAAATGCTATCAACATGTTGGAATTATATTTCTTCTCTTTACTTGCACAATAATTCATCCATTGATGGAAAAAAAAACTGTAGGAGGCTGATGAATTTATTATTGGACTTCCTAAATCATGCGATGGAAAAGAGACACCTCAGTCAAATAAAATTCGAAGTATTGCTGGAAGGGTGGCAGCCCGGGCAGCTGAAAGGTGAAATACACCGAATGGTTGCACTTGATTCTCCTATGTCTTCCTCTCTGTTCTGATACTGCTTTTAGTTTAGGGGCTGGAGAGTTTACTTGCATGATGAACATGGGACAACGGCAGAAGCGGACAGCCATATGATTTCCAAGTATTGTTGTCCTCAACACTCACTTATGTTGTCTCTTGTTTAATATTGTTTCCGTGGATTCTATCCTATAAAATTTCATGCATCTCCTCTATTAATATTGTCAGTGTAAACTATATCGCACTTAATGGATTGTCATTCAACATAGTGCCATATTGATTTATCCATTTCCTCTGAGGATTTTGTTGACGTAGATTTTAGGGGTTTGTAGAAATGATAGACTGCCATGTGAAGATTCTTAGACCAATGGCGAACTGAAACTGATGTTAATCTCTATTCTCTACCATTTGGCATTAACTTCATGAATTTATCAAGGTGATGCAGACAGTTGGTTGTTATTTGCTATGGTATTATTGGGATAGGTAGGAATGGAAGAGATGAACACTGGATAAGAAGGTAGAAAAAGCTTATCCCAAATGGAGAAAAAAAAAAGATCTAAGAAGTGCAATGATTTAACATAAGAGATAAAATGAGAACTTTCTCCAAGAATCAAATTAAAATCTTTATTATCAATTAAAAGCGATCAATACTGGCAGGCTAAGTCTGTCTCTTTGTGGGACCCTGTGGTGTTTAAAGTTTGGAATCGGTTAGCCCATTGGAAGAATTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCAAAAAAAAAAAAGCAGGTAGGCTAACCTTGATGAAGACTACCTTGAGTGGTATTCCTATTTATTACTTTTCGCTTTTCAGGGCCCATGTGAGGTGTATAAGTGTATGGAGAGGTTGATGCATGACTTCCTTTGGGAAGGGGTTGATGAAGGTAAAGGCAAAGGTTCACACTTGATTAGATGGGGGATGAGACGGTAAAGGCAAAGGTTCCCACTTGATTAGATGGGAGATGAGAGAATGGTTTCCTTGGGGGGTTTGAAAATTGGGAATCTTAGGATTCGTGACAAAACCCTTTTAGCCAAATGGTTAAGGCGCTTTTCCTCCGAGCCCAATTCTTTGTGGCGTAGGATCACTGAAAGTAAACATGGCCCCCATCATTTTGAACGGTTGTCTAAAGGGATCAAAGGTACCCACCAGAATTTGTGAAAAGATATTTCGAAAGAGCTCCCTTTTTTTGTTCATTTGGTTTGTTGTGTGGTGGGGGAGGGGAGAGATACTTACTTTTGGGAAGATCACTGGTGGGAGCTCTTGTTCCTTTTCATTCGGATTCCATCATTCTTTTTCTGATAGGGAAGCAGGGATGTGGCCGCTCTTCTTTCTTTACTCGAGGGTCACCCTTTTAGGTTGGGGAGAAGGGATGTCAGACTTTTCACCTAGCAAATGTCTCCACTGAATGCTATTGAGATCATCTGTTGATTTTATGCCTGAAAACTCAACACTGGAAGGATCTAAAAGAAACCACATTGTGACTGAGGGAGCAAAGCAAAAGTAAGATTGAATGACGTGAATGATGGAGAACCTAGTCAATTACTAGAAATTTTGATACTCGTGCAAACTTCTATATGAAACTGATGGAGAATTGACTTGTTTCTTGTGAGGGTTGTTGCATGGATAGTGACACATTTTTGTCGCCTGTGGTTATTGATGTTATCAGTTTCTGTTATTGATGTTATCAGTTTCTGTTTTGCTTTATTGTATTTAATGGAAGAGTACAATGGTACAGTTTATATTTAAAATGGGCCTTGCGGCTGTTTTTAGATTTTCATCATGCAAACAAGATACTTTGTTGACATAAGAAAAGAAAAAAATTTGTTATCCCACTAGTATAGAAAAGACTTCTTTTTTTTTTTTTTTTTTTCTTTTTGTTTTCTAATTGTTTTTTAGATATTTCTCTTGCGGTTCTCTCAGTTTAAATTGTATGACTCTGAGACCCTGTCCGTTCATTAGCTATGGTTAGACTGTATGTTGCATCGACTGGAAGAACTCTATGTAATCTTTTAGGCTCGGGGTTGGCTTTCCTCCCCCTCCTTTCCTCCACTCCTTTTGTAGTTCCAATTAATCTATGAAATTGGTTGGTTTGTTACTGAAAAATAGATAATGATATCCTCTTTATATCAGTAGATCTATACTTCTCTATTTGGGTTGGTCACGTAATGACGTATAGTAATGTAACAAGATTTGAATATGGAAAATTGACATTTTGATGTTTTGTTCAGGGGGCTCAATAAATCTACTCGGCAGAAGAAGATTGATGCCTATGCTGCCATGGTAAAGTTGTGAATATTTTCATATTATGAGCACTGGATTATATGAAATGCAGCAATCCATGTGCAGGCTTCCTTTTTTTTTTTTTTAATAATTTTTTCACTTTACTTCTCTTTATTTGATGCAGATGGTACTAGAGAGATATTTTTTCTAATAATTTTTTCACATTACTTCTCTTTATTTGATGCAGATGGTACTAGAGAGATATTTTTTCATGTCAGGCGAGGGAACCGAGCTTGTAGTGCCTAAGAGTCTAGTCTTACAAGATAAGCTTATTGAGGGACCACCTACAGACCCAGACTTTAAGGATTGA

mRNA sequence

ATGGAAACGATGTGTGCGCAACGTTTCCAACCCTTTCAGTTTCCGCTGCAGAGCCACAATCTTGTGTCTCCCACCATTTTCTGTCTTCCACCACTCCCTTCCTCCCTATCCCTTCCTCCTCTGCCTCCATCTCCAACCCTAATTTGCAAATGCCACAACCCAATTTCCTCCATTGAACTTCCTCCCAACGCCCTTCGCCGCAAGCTCGACCCTCACTGGAGAGGAGGTTTCAGTCTAGGGGTCGACCTCGGAACCTCTCGCACTGGACTTGCTCTTAGTAAAGGCTTCTCCACTCGTCCTCTTACCGTTCTGGAGTTGCGAGGACAAAAGCTTGAGGTTAAGCTTATTGAGATTGCTGAACAGGAAGAGGCTGATGAATTTATTATTGGACTTCCTAAATCATGCGATGGAAAAGAGACACCTCAGTCAAATAAAATTCGAAGTATTGCTGGAAGGGTGGCAGCCCGGGCAGCTGAAAGGGGCTGGAGAGTTTACTTGCATGATGAACATGGGACAACGGCAGAAGCGGACAGCCATATGATTTCCAAGGGGCTCAATAAATCTACTCGGCAGAAGAAGATTGATGCCTATGCTGCCATGATGGTACTAGAGAGATATTTTTTCATGTCAGGCGAGGGAACCGAGCTTGTAGTGCCTAAGAGTCTAGTCTTACAAGATAAGCTTATTGAGGGACCACCTACAGACCCAGACTTTAAGGATTGA

Coding sequence (CDS)

ATGGAAACGATGTGTGCGCAACGTTTCCAACCCTTTCAGTTTCCGCTGCAGAGCCACAATCTTGTGTCTCCCACCATTTTCTGTCTTCCACCACTCCCTTCCTCCCTATCCCTTCCTCCTCTGCCTCCATCTCCAACCCTAATTTGCAAATGCCACAACCCAATTTCCTCCATTGAACTTCCTCCCAACGCCCTTCGCCGCAAGCTCGACCCTCACTGGAGAGGAGGTTTCAGTCTAGGGGTCGACCTCGGAACCTCTCGCACTGGACTTGCTCTTAGTAAAGGCTTCTCCACTCGTCCTCTTACCGTTCTGGAGTTGCGAGGACAAAAGCTTGAGGTTAAGCTTATTGAGATTGCTGAACAGGAAGAGGCTGATGAATTTATTATTGGACTTCCTAAATCATGCGATGGAAAAGAGACACCTCAGTCAAATAAAATTCGAAGTATTGCTGGAAGGGTGGCAGCCCGGGCAGCTGAAAGGGGCTGGAGAGTTTACTTGCATGATGAACATGGGACAACGGCAGAAGCGGACAGCCATATGATTTCCAAGGGGCTCAATAAATCTACTCGGCAGAAGAAGATTGATGCCTATGCTGCCATGATGGTACTAGAGAGATATTTTTTCATGTCAGGCGAGGGAACCGAGCTTGTAGTGCCTAAGAGTCTAGTCTTACAAGATAAGCTTATTGAGGGACCACCTACAGACCCAGACTTTAAGGATTGA

Protein sequence

METMCAQRFQPFQFPLQSHNLVSPTIFCLPPLPSSLSLPPLPPSPTLICKCHNPISSIELPPNALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEVKLIEIAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEADSHMISKGLNKSTRQKKIDAYAAMMVLERYFFMSGEGTELVVPKSLVLQDKLIEGPPTDPDFKD

Homology

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BLAST of Clc05G00460 vs. NCBI nr
Match: XP_038893103.1 (putative pre-16S rRNA nuclease isoform X1 [Benincasa hispida])

HSP 1 Score: 424.1 bits (1089), Expect = 8.1e-115
Identity = 217/238 (91.18%), Postives = 222/238 (93.28%), Query Frame = 0


Query: 4   MCAQRFQPFQ-FPLQSHNLVSPTIFCLPPLPSSLSLPPLPPSPTLICKCHNPISSIELPP 63
           MCAQRFQ FQ FPLQSH +  PTIFCLP +P   SL PLPPSPTLICKC   ISSI+LPP
Sbjct: 1   MCAQRFQEFQPFPLQSHKVHCPTIFCLPRIP---SLAPLPPSPTLICKCQKAISSIDLPP 60

Query: 64  NALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEVKLIEIAEQE 123
           NALRRKLDP WRGGFSLGVDLGTSRTGLALSKGFSTRPL VLELRGQKLEVKLIEIAEQE
Sbjct: 61  NALRRKLDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLGVLELRGQKLEVKLIEIAEQE 120

Query: 124 EADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEADSHMIS 183
           EADEFIIGLPKSCDGKETPQSNKIRSIAGRVA RAAERGWRVYLHDEHGTTAEA+SHMIS
Sbjct: 121 EADEFIIGLPKSCDGKETPQSNKIRSIAGRVATRAAERGWRVYLHDEHGTTAEAESHMIS 180

Query: 184 KGLNKSTRQKKIDAYAAMMVLERYFFMSGEGTELVVPKSLVLQDKLIEGPPTDPDFKD 241
           KGLNKSTRQKKIDAYAAMMVLERYFFMSGEGTELVVPKSL+LQDKLIEGPPTDPDFKD
Sbjct: 181 KGLNKSTRQKKIDAYAAMMVLERYFFMSGEGTELVVPKSLILQDKLIEGPPTDPDFKD 235

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BLAST of Clc05G00460 vs. NCBI nr
Match: XP_022979278.1 (uncharacterized protein LOC111479048 [Cucurbita maxima])

HSP 1 Score: 394.4 bits (1012), Expect = 6.9e-106
Identity = 206/237 (86.92%), Postives = 212/237 (89.45%), Query Frame = 0


Query: 4   MCAQRFQPFQFPLQSHNLVSPTIFCLPPLPSSLSLPPLPPSPTLICKCHNPISSIELPPN 63
           MCA  FQP  FPLQSH L S  IFC PP PS  SLP LPPSP LICKC   ISS+ELPPN
Sbjct: 1   MCALHFQP--FPLQSHKLHSSAIFC-PPRPS--SLPLLPPSPNLICKCRTAISSVELPPN 60

Query: 64  ALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEVKLIEIAEQEE 123
           ALRRKLDP WRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLE KLIEIAEQEE
Sbjct: 61  ALRRKLDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEFKLIEIAEQEE 120

Query: 124 ADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEADSHMISK 183
           ADEFIIGLPKS DGKETPQSNKIRSIAGRVAA+AAERGWRVYLHDEHGTTAEA+SHMI +
Sbjct: 121 ADEFIIGLPKSLDGKETPQSNKIRSIAGRVAAQAAERGWRVYLHDEHGTTAEAESHMICR 180

Query: 184 GLNKSTRQKKIDAYAAMMVLERYFFMSGEGTELVVPKSLVLQDKLIEGPPTDPDFKD 241
           GLNK+TRQKKIDAYAAMMVLERYF MSGEGTELVVPK  VLQ+KLIEGPP DPDFKD
Sbjct: 181 GLNKTTRQKKIDAYAAMMVLERYFSMSGEGTELVVPKGQVLQEKLIEGPPIDPDFKD 232

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BLAST of Clc05G00460 vs. NCBI nr
Match: XP_023528266.1 (uncharacterized protein LOC111791236 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 391.3 bits (1004), Expect = 5.8e-105
Identity = 205/237 (86.50%), Postives = 211/237 (89.03%), Query Frame = 0


Query: 4   MCAQRFQPFQFPLQSHNLVSPTIFCLPPLPSSLSLPPLPPSPTLICKCHNPISSIELPPN 63
           MCA  FQP  FP QSH L S  IFC PP PS  SLP LPPSP LICKC   ISS+ELPPN
Sbjct: 1   MCALHFQP--FPPQSHKLHSSAIFC-PPRPS--SLPLLPPSPNLICKCKTAISSVELPPN 60

Query: 64  ALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEVKLIEIAEQEE 123
           ALRRKLDP WRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLE KLIEIAEQEE
Sbjct: 61  ALRRKLDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEFKLIEIAEQEE 120

Query: 124 ADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEADSHMISK 183
           ADEFIIGLPKS DGKETPQSNKIRSIAGRVAA+AAERGWRVYLHDEHGTTAEA+SHMI +
Sbjct: 121 ADEFIIGLPKSLDGKETPQSNKIRSIAGRVAAQAAERGWRVYLHDEHGTTAEAESHMICR 180

Query: 184 GLNKSTRQKKIDAYAAMMVLERYFFMSGEGTELVVPKSLVLQDKLIEGPPTDPDFKD 241
           GLNK+TRQKKIDAYAAMMVLERYF MSGEGTELVVPK  VLQ+KLIEGPP DPDFKD
Sbjct: 181 GLNKTTRQKKIDAYAAMMVLERYFSMSGEGTELVVPKGQVLQEKLIEGPPIDPDFKD 232

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BLAST of Clc05G00460 vs. NCBI nr
Match: KAG6582728.1 (hypothetical protein SDJN03_22730, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020681.1 yqgF [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 390.2 bits (1001), Expect = 1.3e-104
Identity = 204/237 (86.08%), Postives = 210/237 (88.61%), Query Frame = 0


Query: 4   MCAQRFQPFQFPLQSHNLVSPTIFCLPPLPSSLSLPPLPPSPTLICKCHNPISSIELPPN 63
           MCA  FQP  FPLQSH L S  IFC PP PS  SLP LPPSP LICKC   ISS+ELPPN
Sbjct: 1   MCALHFQP--FPLQSHKLHSSAIFC-PPRPS--SLPLLPPSPNLICKCKTAISSVELPPN 60

Query: 64  ALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEVKLIEIAEQEE 123
           ALRRKLDP WRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLE KLIEIAEQEE
Sbjct: 61  ALRRKLDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEFKLIEIAEQEE 120

Query: 124 ADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEADSHMISK 183
           ADEFIIGLPKS DGKETP SNKIRSIAGRVAA+AAERGWRVYLHDEHGTTAEA+SHMI +
Sbjct: 121 ADEFIIGLPKSLDGKETPHSNKIRSIAGRVAAQAAERGWRVYLHDEHGTTAEAESHMICR 180

Query: 184 GLNKSTRQKKIDAYAAMMVLERYFFMSGEGTELVVPKSLVLQDKLIEGPPTDPDFKD 241
           GLNK+ RQKKIDAYAAMMVLERYF MSGEGTELVVPK  VLQ+KLIEGPP DPDFKD
Sbjct: 181 GLNKTARQKKIDAYAAMMVLERYFSMSGEGTELVVPKGQVLQEKLIEGPPIDPDFKD 232

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BLAST of Clc05G00460 vs. NCBI nr
Match: XP_022924794.1 (uncharacterized protein LOC111432185 [Cucurbita moschata])

HSP 1 Score: 388.7 bits (997), Expect = 3.8e-104
Identity = 204/237 (86.08%), Postives = 210/237 (88.61%), Query Frame = 0


Query: 4   MCAQRFQPFQFPLQSHNLVSPTIFCLPPLPSSLSLPPLPPSPTLICKCHNPISSIELPPN 63
           MCA  FQP  FPLQS  L S  IFC PP PS  SLP LPPSP LICKC   ISS+ELPPN
Sbjct: 1   MCALHFQP--FPLQSDKLHSSAIFC-PPRPS--SLPLLPPSPNLICKCKTAISSVELPPN 60

Query: 64  ALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEVKLIEIAEQEE 123
           ALRRKLDP WRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLE KLIEIAEQEE
Sbjct: 61  ALRRKLDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEFKLIEIAEQEE 120

Query: 124 ADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEADSHMISK 183
           ADEFIIGLPKS DGKETPQSNKIRSIAGRVAA+AAERGWRVYLHDEHGTTAEA+SHMI +
Sbjct: 121 ADEFIIGLPKSLDGKETPQSNKIRSIAGRVAAQAAERGWRVYLHDEHGTTAEAESHMICR 180

Query: 184 GLNKSTRQKKIDAYAAMMVLERYFFMSGEGTELVVPKSLVLQDKLIEGPPTDPDFKD 241
           GLNK+ RQKKIDAYAAMMVLERYF MSGEGTELVVPK  VLQ+KLIEGPP DPDFKD
Sbjct: 181 GLNKTARQKKIDAYAAMMVLERYFSMSGEGTELVVPKGQVLQEKLIEGPPIDPDFKD 232

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BLAST of Clc05G00460 vs. ExPASy Swiss-Prot
Match: A1SJC8 (Putative pre-16S rRNA nuclease OS=Nocardioides sp. (strain ATCC BAA-499 / JS614) OX=196162 GN=Noca_2408 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.7e-11
Identity = 49/137 (35.77%), Postives = 75/137 (54.74%), Query Frame = 0


Query: 74  RGGFSLGVDLGTSRTGLALS--KGFSTRPL-TVLELRGQKLEVKLIEIAEQEEAD---EF 133
           R G  +G+D G +R G+A S   GF   P+ TV   +G    +  I  AE++E     E 
Sbjct: 2   RAGVRIGIDPGDARIGVARSDPSGFLATPVETVRRGKGDLARIGRILAAEEDEGATVLEV 61

Query: 134 IIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEADSHMISKGLNK 193
           ++GLP+S  G+E P + K+R  AGR+AAR A     V L DE  TT  A++ +  +G   
Sbjct: 62  VVGLPRSLSGREGPAAAKVREFAGRLAARVAP--VPVRLVDERMTTVSAEAMLRDQGRTG 121

Query: 194 STRQKKIDAYAAMMVLE 205
             R+  +D  AA+++L+
Sbjct: 122 GKRRAVVDQAAAVLILQ 136

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BLAST of Clc05G00460 vs. ExPASy Swiss-Prot
Match: Q3SR28 (Putative pre-16S rRNA nuclease OS=Nitrobacter winogradskyi (strain ATCC 25391 / DSM 10237 / CIP 104748 / NCIMB 11846 / Nb-255) OX=323098 GN=Nwi_2004 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 6.2e-09
Identity = 44/137 (32.12%), Postives = 74/137 (54.01%), Query Frame = 0


Query: 72  HWRG-GFSLGVDLGTSRTGLALS---KGFSTRPLTVLELRGQKLEVKLIEIAEQEEADEF 131
           HW   G  +G+DLGT   G+A+S   +  +T   T+          +L+ IA +  A+ F
Sbjct: 14  HWPARGALVGLDLGTKTIGVAVSDPDRRLATGVETIRRKTFTADAARLLAIAGERRAEGF 73

Query: 132 IIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEADSHMISKGLNK 191
           I+GLP + DG E P++   R+ A R  AR  +  + + L DE  +TA  +  +I   +++
Sbjct: 74  ILGLPINMDGSEGPRAQSTRAFA-RNLARLTD--FAIGLWDERLSTAAVERELIGLDMSR 133

Query: 192 STRQKKIDAYAAMMVLE 205
           + R K ID +AA+ +L+
Sbjct: 134 ARRAKVIDEHAAIFILQ 147

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BLAST of Clc05G00460 vs. ExPASy Swiss-Prot
Match: C6C125 (Putative pre-16S rRNA nuclease OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIMB 8403 / VKM B-1763) OX=526222 GN=Desal_1125 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.8e-08
Identity = 41/131 (31.30%), Postives = 69/131 (52.67%), Query Frame = 0


Query: 79  LGVDLGTSRTGLALS--KGFSTRPLTVLE-LRGQKLEVKLIEIAEQEEADEFIIGLPKSC 138
           L +D GT R GLA+S        P  V+E      +  +L+EI E E+  + +IGLP S 
Sbjct: 4   LSIDFGTKRVGLAISDPDQIFAFPYKVMERTTRDAMFSELLEIIENEKVGDIVIGLPLSL 63

Query: 139 DGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEADSHMISKGLNKSTRQKKID 198
           DG++T  + ++R+ A  +  R       ++L DE  ++  A+  +   GL    R+K +D
Sbjct: 64  DGEDTLTTRQVRNFAASLERRV---DLPIHLVDERLSSIAAEDELKEAGLWDRKRKKNLD 123

Query: 199 AYAAMMVLERY 207
           + AA ++LE +
Sbjct: 124 SQAAKIILETW 131

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BLAST of Clc05G00460 vs. ExPASy Swiss-Prot
Match: B8DIJ5 (Putative pre-16S rRNA nuclease OS=Desulfovibrio vulgaris (strain DSM 19637 / Miyazaki F) OX=883 GN=DvMF_2352 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.8e-08
Identity = 39/131 (29.77%), Postives = 70/131 (53.44%), Query Frame = 0


Query: 79  LGVDLGTSRTGLALSK--GFSTRP-LTVLELRGQKLEVKLIEIAEQEEADEFIIGLPKSC 138
           LG+D GT RTG+A S   G    P  T++     +   +L+ +AE+E A+ +++GLP   
Sbjct: 4   LGIDYGTKRTGVAASDTGGSMAFPRRTIVMTTRDRFFAELLAVAEEERAEAYVVGLPLLH 63

Query: 139 DGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEADSHMISKGLNKSTRQKKID 198
           DG +T  + ++R+   R+  R       VYL +E  ++ EA+  +   GL+    +  +D
Sbjct: 64  DGTDTLTTRQVRNFVERLKRRTT---LPVYLMEEFLSSYEAEDDLRDAGLSGRALEAVVD 123

Query: 199 AYAAMMVLERY 207
             AA+ +L+ +
Sbjct: 124 QQAAVRILQSF 131

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BLAST of Clc05G00460 vs. ExPASy Swiss-Prot
Match: Q032W3 (Putative pre-16S rRNA nuclease OS=Lactococcus lactis subsp. cremoris (strain SK11) OX=272622 GN=LACR_0138 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.1e-08
Identity = 37/133 (27.82%), Postives = 74/133 (55.64%), Query Frame = 0


Query: 79  LGVDLGTSRTGLALSK--GFSTRPLTVLELRGQKLEV---KLIEIAEQEEADEFIIGLPK 138
           LG+D+GT   G+++S   G + +P+  +++  +  E+   +L  + ++ + ++ ++GLPK
Sbjct: 6   LGLDVGTKTVGVSVSDLLGMTAQPVETIKIDSEAGELGFDRLAVLIKEYKPEKVVLGLPK 65

Query: 139 SCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEADSHMISKGLNKSTRQKK 198
             +G E  ++   R    ++   A E    V   DE  TTA+A+  +I  G+ +  R+K 
Sbjct: 66  HMNGDEGIRAEASRDYGTKL---ANEFSLEVAYQDERLTTAQAEKVLIDGGVRRKDRKKS 125

Query: 199 IDAYAAMMVLERY 207
           ID  AA+++L+ Y
Sbjct: 126 IDKLAAVLILQNY 135

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BLAST of Clc05G00460 vs. ExPASy TrEMBL
Match: A0A6J1IVR0 (uncharacterized protein LOC111479048 OS=Cucurbita maxima OX=3661 GN=LOC111479048 PE=3 SV=1)

HSP 1 Score: 394.4 bits (1012), Expect = 3.3e-106
Identity = 206/237 (86.92%), Postives = 212/237 (89.45%), Query Frame = 0


Query: 4   MCAQRFQPFQFPLQSHNLVSPTIFCLPPLPSSLSLPPLPPSPTLICKCHNPISSIELPPN 63
           MCA  FQP  FPLQSH L S  IFC PP PS  SLP LPPSP LICKC   ISS+ELPPN
Sbjct: 1   MCALHFQP--FPLQSHKLHSSAIFC-PPRPS--SLPLLPPSPNLICKCRTAISSVELPPN 60

Query: 64  ALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEVKLIEIAEQEE 123
           ALRRKLDP WRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLE KLIEIAEQEE
Sbjct: 61  ALRRKLDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEFKLIEIAEQEE 120

Query: 124 ADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEADSHMISK 183
           ADEFIIGLPKS DGKETPQSNKIRSIAGRVAA+AAERGWRVYLHDEHGTTAEA+SHMI +
Sbjct: 121 ADEFIIGLPKSLDGKETPQSNKIRSIAGRVAAQAAERGWRVYLHDEHGTTAEAESHMICR 180

Query: 184 GLNKSTRQKKIDAYAAMMVLERYFFMSGEGTELVVPKSLVLQDKLIEGPPTDPDFKD 241
           GLNK+TRQKKIDAYAAMMVLERYF MSGEGTELVVPK  VLQ+KLIEGPP DPDFKD
Sbjct: 181 GLNKTTRQKKIDAYAAMMVLERYFSMSGEGTELVVPKGQVLQEKLIEGPPIDPDFKD 232

[Close]

BLAST of Clc05G00460 vs. ExPASy TrEMBL
Match: A0A6J1EA74 (uncharacterized protein LOC111432185 OS=Cucurbita moschata OX=3662 GN=LOC111432185 PE=3 SV=1)

HSP 1 Score: 388.7 bits (997), Expect = 1.8e-104
Identity = 204/237 (86.08%), Postives = 210/237 (88.61%), Query Frame = 0


Query: 4   MCAQRFQPFQFPLQSHNLVSPTIFCLPPLPSSLSLPPLPPSPTLICKCHNPISSIELPPN 63
           MCA  FQP  FPLQS  L S  IFC PP PS  SLP LPPSP LICKC   ISS+ELPPN
Sbjct: 1   MCALHFQP--FPLQSDKLHSSAIFC-PPRPS--SLPLLPPSPNLICKCKTAISSVELPPN 60

Query: 64  ALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEVKLIEIAEQEE 123
           ALRRKLDP WRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLE KLIEIAEQEE
Sbjct: 61  ALRRKLDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEFKLIEIAEQEE 120

Query: 124 ADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEADSHMISK 183
           ADEFIIGLPKS DGKETPQSNKIRSIAGRVAA+AAERGWRVYLHDEHGTTAEA+SHMI +
Sbjct: 121 ADEFIIGLPKSLDGKETPQSNKIRSIAGRVAAQAAERGWRVYLHDEHGTTAEAESHMICR 180

Query: 184 GLNKSTRQKKIDAYAAMMVLERYFFMSGEGTELVVPKSLVLQDKLIEGPPTDPDFKD 241
           GLNK+ RQKKIDAYAAMMVLERYF MSGEGTELVVPK  VLQ+KLIEGPP DPDFKD
Sbjct: 181 GLNKTARQKKIDAYAAMMVLERYFSMSGEGTELVVPKGQVLQEKLIEGPPIDPDFKD 232

[Close]

BLAST of Clc05G00460 vs. ExPASy TrEMBL
Match: A0A0A0L3L5 (YqgFc domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G116900 PE=3 SV=1)

HSP 1 Score: 381.3 bits (978), Expect = 2.9e-102
Identity = 199/235 (84.68%), Postives = 208/235 (88.51%), Query Frame = 0


Query: 8   RFQPFQFPLQSHNLVSPTIFCLPPLPSSLSLPPLPPSPTLICKCH--NPISSIELPPNAL 67
           +FQ FQFPLQ+H L+      LPP          P SP LI K H  NPISSIELPPNAL
Sbjct: 11  QFQAFQFPLQTHKLLHSLHPHLPP----------PSSPALISKSHNNNPISSIELPPNAL 70

Query: 68  RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEVKLIEIAEQEEAD 127
           RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLE KLIEIAEQEEAD
Sbjct: 71  RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEAKLIEIAEQEEAD 130

Query: 128 EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEADSHMISKGL 187
           EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYL+DEHGTTAEA+SHMIS+GL
Sbjct: 131 EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISRGL 190

Query: 188 NKSTRQKKIDAYAAMMVLERYFFMSGEGTELVVPKSLVLQDKLIEGPPTDPDFKD 241
           NKSTRQKKIDAYAAMMVLERYF  SG+GTEL+VPKSLVLQDKLIEGPPTDPDF+D
Sbjct: 191 NKSTRQKKIDAYAAMMVLERYFSTSGQGTELLVPKSLVLQDKLIEGPPTDPDFRD 235

[Close]

BLAST of Clc05G00460 vs. ExPASy TrEMBL
Match: A0A1S3AUT7 (uncharacterized protein LOC103483114 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483114 PE=3 SV=1)

HSP 1 Score: 380.9 bits (977), Expect = 3.8e-102
Identity = 200/241 (82.99%), Postives = 208/241 (86.31%), Query Frame = 0


Query: 4   MCAQ--RFQPFQFPLQSHNLVSPTIFCLPPLPSSLSLPPLPPSPTLICKCH--NPISSIE 63
           +C Q  +FQ FQFPLQSH L+      LPP          P  P L  K H  NP SSIE
Sbjct: 42  LCGQCFQFQAFQFPLQSHRLLHSLHPHLPP----------PSPPALFSKSHNNNPFSSIE 101

Query: 64  LPPNALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEVKLIEIA 123
           LPPNALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFS RPLTVLELRGQKLE KLI+IA
Sbjct: 102 LPPNALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSIRPLTVLELRGQKLEAKLIQIA 161

Query: 124 EQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEADSH 183
           EQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYL+DEHGTTAEA+SH
Sbjct: 162 EQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESH 221

Query: 184 MISKGLNKSTRQKKIDAYAAMMVLERYFFMSGEGTELVVPKSLVLQDKLIEGPPTDPDFK 241
           MISKGLNKSTRQKKIDAYAAMMVLERYF MSG+GTEL+VPKSLVLQDKLIEGPPTDPDFK
Sbjct: 222 MISKGLNKSTRQKKIDAYAAMMVLERYFLMSGQGTELLVPKSLVLQDKLIEGPPTDPDFK 272

[Close]

BLAST of Clc05G00460 vs. ExPASy TrEMBL
Match: A0A6J1CTB8 (uncharacterized protein LOC111014097 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111014097 PE=3 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 4.1e-96
Identity = 196/245 (80.00%), Postives = 204/245 (83.27%), Query Frame = 0


Query: 4   MCAQRFQPFQFPLQS-----HNLVSPTIFCLPPLPSSLSLPPLPPSPTLICKC---HNPI 63
           M +Q FQP  FP QS       L S TI  LP   +          P L C C      I
Sbjct: 1   MFSQHFQP--FPPQSLIPSNQKLQSSTILWLPRCSTF-------AQPILECNCVSETRAI 60

Query: 64  SSIELPPNALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEVKL 123
           SSIELPPNALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRG KLEVKL
Sbjct: 61  SSIELPPNALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGHKLEVKL 120

Query: 124 IEIAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAE 183
           IEIAEQEEADEFIIGLPKS DGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTT+E
Sbjct: 121 IEIAEQEEADEFIIGLPKSSDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTSE 180

Query: 184 ADSHMISKGLNKSTRQKKIDAYAAMMVLERYFFMSGEGTELVVPKSLVLQDKLIEGPPTD 241
           A++HMI KGLNKSTRQKKIDAYAAMMVLERY+FMSG+GTELVVPKSLVLQ+KLIEGPPTD
Sbjct: 181 AENHMICKGLNKSTRQKKIDAYAAMMVLERYYFMSGQGTELVVPKSLVLQEKLIEGPPTD 236

[Close]

BLAST of Clc05G00460 vs. TAIR 10
Match: AT1G12244.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 258.1 bits (658), Expect = 7.2e-69
Identity = 124/180 (68.89%), Postives = 152/180 (84.44%), Query Frame = 0


Query: 59  ELPPNALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEVKLIEI 118
           E+PPNA+RRK+D +WRGGFSLGVDLG SRTG+A+SKG++ +PLTVL+ RGQKLE +L+EI
Sbjct: 64  EIPPNAVRRKIDRNWRGGFSLGVDLGLSRTGIAISKGYTVKPLTVLKSRGQKLETRLLEI 123

Query: 119 AEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEADS 178
           AE+EEADEFIIGLP+S DGKET QSNKIRS+AGR+A +AAERGWRVY+ DEHGTT+EA  
Sbjct: 124 AEEEEADEFIIGLPRSSDGKETIQSNKIRSVAGRLAIQAAERGWRVYVFDEHGTTSEASD 183

Query: 179 HMISKGLNKSTRQKKIDAYAAMMVLERYFFMSGEGTELVVPKSLVLQDKLIEGPPTDPDF 238
            MI  GL+KS RQ + DAYAA+++LERYF   G G E+++PKSL LQ K+  G P DPDF
Sbjct: 184 RMIVMGLSKSERQNRSDAYAAVILLERYFSTQGLGIEIILPKSLELQAKIKNGAPVDPDF 243

The following BLAST results are available for this feature:

BLAST of Clc05G00460 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038893103.1	8.1e-115	91.18	putative pre-16S rRNA nuclease isoform X1 [Benincasa hispida]	[more]
XP_022979278.1	6.9e-106	86.92	uncharacterized protein LOC111479048 [Cucurbita maxima]	[more]
XP_023528266.1	5.8e-105	86.50	uncharacterized protein LOC111791236 [Cucurbita pepo subsp. pepo]	[more]
KAG6582728.1	1.3e-104	86.08	hypothetical protein SDJN03_22730, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022924794.1	3.8e-104	86.08	uncharacterized protein LOC111432185 [Cucurbita moschata]	[more]

BLAST of Clc05G00460 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A1SJC8	1.7e-11	35.77	Putative pre-16S rRNA nuclease OS=Nocardioides sp. (strain ATCC BAA-499 / JS614)...	[more]
Q3SR28	6.2e-09	32.12	Putative pre-16S rRNA nuclease OS=Nitrobacter winogradskyi (strain ATCC 25391 / ...	[more]
C6C125	1.8e-08	31.30	Putative pre-16S rRNA nuclease OS=Desulfovibrio salexigens (strain ATCC 14822 / ...	[more]
B8DIJ5	1.8e-08	29.77	Putative pre-16S rRNA nuclease OS=Desulfovibrio vulgaris (strain DSM 19637 / Miy...	[more]
Q032W3	3.1e-08	27.82	Putative pre-16S rRNA nuclease OS=Lactococcus lactis subsp. cremoris (strain SK1...	[more]

BLAST of Clc05G00460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IVR0	3.3e-106	86.92	uncharacterized protein LOC111479048 OS=Cucurbita maxima OX=3661 GN=LOC111479048...	[more]
A0A6J1EA74	1.8e-104	86.08	uncharacterized protein LOC111432185 OS=Cucurbita moschata OX=3662 GN=LOC1114321...	[more]
A0A0A0L3L5	2.9e-102	84.68	YqgFc domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G116900 PE=3 ...	[more]
A0A1S3AUT7	3.8e-102	82.99	uncharacterized protein LOC103483114 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1CTB8	4.1e-96	80.00	uncharacterized protein LOC111014097 isoform X1 OS=Momordica charantia OX=3673 G...	[more]

BLAST of Clc05G00460 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G12244.1	7.2e-69	68.89	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006641	YqgF/RNase H-like domain	SMART	SM00732	rnase_8s	coord: 76..176 e-value: 1.9E-18 score: 77.3
IPR005227	Putative pre-16S rRNA nuclease	PFAM	PF03652	RuvX	coord: 78..207 e-value: 8.0E-28 score: 97.5
IPR005227	Putative pre-16S rRNA nuclease	TIGRFAM	TIGR00250	TIGR00250	coord: 79..207 e-value: 1.3E-19 score: 68.5
IPR005227	Putative pre-16S rRNA nuclease	PANTHER	PTHR33317	POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN	coord: 55..238
IPR005227	Putative pre-16S rRNA nuclease	HAMAP	MF_00651	Nuclease_YqgF	coord: 76..211 score: 16.397202
IPR005227	Putative pre-16S rRNA nuclease	CDD	cd16964	YqgF	coord: 79..207 e-value: 8.82346E-39 score: 129.53
IPR037027	YqgF/RNase H-like domain superfamily	GENE3D	3.30.420.140		coord: 78..214 e-value: 1.3E-31 score: 111.3
None	No IPR available	PANTHER	PTHR33317:SF4	POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN	coord: 55..238
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 77..207

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc05G00460.2	Clc05G00460.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000967	rRNA 5'-end processing
biological_process	GO:0006139	nucleobase-containing compound metabolic process
biological_process	GO:0006364	rRNA processing