Clc04G13205 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc04G13205
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	pentatricopeptide repeat-containing protein isoform X2
Location	ClcChr04: 26427066 .. 26427299 (+)
RNA-Seq Expression	Clc04G13205
Synteny	Clc04G13205

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGTTGGGTTACGCGAAGATGAAGTATGTTGGTGAGGCTGTGGGTTTGTTTAGAGAGATGATGGAAGCTGGGTTTGAGCCCGATGACATGATCTTAGTTATGGAAGTTGGGTTTGAGCTGGATGAGATGATGGAAACTGAGTTTATGGCTGACTTGTGTCTTGGGGGCGTGTGGAGAGCTGGGGGATTTGAGACTCGGCACTTGGGTGGGAGCGTTGGTGATGGAGAATGA

mRNA sequence

ATGATGTTGGGTTACGCGAAGATGAAGTATGTTGGTGAGGCTGTGGGTTTGTTTAGAGAGATGATGGAAGCTGGGTTTGAGCCCGATGACATGATCTTAGTTATGGAAGTTGGGTTTGAGCTGGATGAGATGATGGAAACTGAGTTTATGGCTGACTTGTGTCTTGGGGGCGTGTGGAGAGCTGGGGGATTTGAGACTCGGCACTTGGGTGGGAGCGTTGGTGATGGAGAATGA

Coding sequence (CDS)

ATGATGTTGGGTTACGCGAAGATGAAGTATGTTGGTGAGGCTGTGGGTTTGTTTAGAGAGATGATGGAAGCTGGGTTTGAGCCCGATGACATGATCTTAGTTATGGAAGTTGGGTTTGAGCTGGATGAGATGATGGAAACTGAGTTTATGGCTGACTTGTGTCTTGGGGGCGTGTGGAGAGCTGGGGGATTTGAGACTCGGCACTTGGGTGGGAGCGTTGGTGATGGAGAATGA

Protein sequence

MMLGYAKMKYVGEAVGLFREMMEAGFEPDDMILVMEVGFELDEMMETEFMADLCLGGVWRAGGFETRHLGGSVGDGE

Homology

[Close]

BLAST of Clc04G13205 vs. NCBI nr
Match: XP_038889591.1 (pentatricopeptide repeat-containing protein At2g34400 [Benincasa hispida])

HSP 1 Score: 55.5 bits (132), Expect = 2.4e-04
Identity = 25/38 (65.79%), Postives = 33/38 (86.84%), Query Frame = 0


Query: 1   MMLGYAKMKYVGEAVGLFREMMEAGFEPDDMILVMEVG 39
           M+ GY+KM++ GEAVGLFREMMEAGF+P++M LV  +G
Sbjct: 199 MISGYSKMRHAGEAVGLFREMMEAGFQPNEMALVSVLG 236

[Close]

BLAST of Clc04G13205 vs. NCBI nr
Match: XP_008451433.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g34400 [Cucumis melo])

HSP 1 Score: 55.1 bits (131), Expect = 3.2e-04
Identity = 25/38 (65.79%), Postives = 33/38 (86.84%), Query Frame = 0


Query: 1   MMLGYAKMKYVGEAVGLFREMMEAGFEPDDMILVMEVG 39
           M+ GY+KM++ GEAVGLFREMMEAGF+P++M LV  +G
Sbjct: 199 MISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLG 236

[Close]

BLAST of Clc04G13205 vs. NCBI nr
Match: XP_004148338.1 (pentatricopeptide repeat-containing protein At2g34400 [Cucumis sativus] >KGN61161.1 hypothetical protein Csa_021156 [Cucumis sativus])

HSP 1 Score: 55.1 bits (131), Expect = 3.2e-04
Identity = 25/38 (65.79%), Postives = 33/38 (86.84%), Query Frame = 0


Query: 1   MMLGYAKMKYVGEAVGLFREMMEAGFEPDDMILVMEVG 39
           M+ GY+KM++ GEAVGLFREMMEAGF+P++M LV  +G
Sbjct: 199 MISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLG 236

[Close]

BLAST of Clc04G13205 vs. NCBI nr
Match: XP_018857160.2 (pentatricopeptide repeat-containing protein At2g34400 isoform X2 [Juglans regia] >KAF5456361.1 hypothetical protein F2P56_025854 [Juglans regia])

HSP 1 Score: 54.7 bits (130), Expect = 4.1e-04
Identity = 30/56 (53.57%), Postives = 36/56 (64.29%), Query Frame = 0


Query: 1   MMLGYAKMKYVGEAVGLFREMMEAGFEPDDMILVMEVGFELDEMMETEFMADLCLG 57
           M+ GY+KM Y  +AVGLFREMME GFEPD+M LV  +G   D       + DL LG
Sbjct: 205 MLSGYSKMGYAADAVGLFREMMEVGFEPDEMTLVSVLGACKD-------LGDLSLG 253

[Close]

BLAST of Clc04G13205 vs. NCBI nr
Match: XP_042988533.1 (pentatricopeptide repeat-containing protein At2g34400 isoform X2 [Carya illinoinensis] >KAG6705828.1 hypothetical protein I3842_07G198000 [Carya illinoinensis] >KAG6705829.1 hypothetical protein I3842_07G198000 [Carya illinoinensis] >KAG6705830.1 hypothetical protein I3842_07G198000 [Carya illinoinensis] >KAG6705831.1 hypothetical protein I3842_07G198000 [Carya illinoinensis] >KAG6705832.1 hypothetical protein I3842_07G198000 [Carya illinoinensis])

HSP 1 Score: 54.7 bits (130), Expect = 4.1e-04
Identity = 30/56 (53.57%), Postives = 36/56 (64.29%), Query Frame = 0


Query: 1   MMLGYAKMKYVGEAVGLFREMMEAGFEPDDMILVMEVGFELDEMMETEFMADLCLG 57
           M+ GY+KM Y  +AVGLFREMME GFEPD+M LV  +G   D       + DL LG
Sbjct: 197 MLSGYSKMGYAADAVGLFREMMEVGFEPDEMTLVSVLGACKD-------LGDLSLG 245

[Close]

BLAST of Clc04G13205 vs. ExPASy TrEMBL
Match: A0A0A0LMG0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G060420 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.5e-04
Identity = 25/38 (65.79%), Postives = 33/38 (86.84%), Query Frame = 0


Query: 1   MMLGYAKMKYVGEAVGLFREMMEAGFEPDDMILVMEVG 39
           M+ GY+KM++ GEAVGLFREMMEAGF+P++M LV  +G
Sbjct: 199 MISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLG 236

[Close]

BLAST of Clc04G13205 vs. ExPASy TrEMBL
Match: A0A1S3BRJ2 (pentatricopeptide repeat-containing protein At2g34400 OS=Cucumis melo OX=3656 GN=LOC103492726 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.5e-04
Identity = 25/38 (65.79%), Postives = 33/38 (86.84%), Query Frame = 0


Query: 1   MMLGYAKMKYVGEAVGLFREMMEAGFEPDDMILVMEVG 39
           M+ GY+KM++ GEAVGLFREMMEAGF+P++M LV  +G
Sbjct: 199 MISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLG 236

[Close]

BLAST of Clc04G13205 vs. ExPASy TrEMBL
Match: A0A2I4HLW6 (pentatricopeptide repeat-containing protein At2g34400 isoform X1 OS=Juglans regia OX=51240 GN=LOC109019338 PE=4 SV=2)

HSP 1 Score: 54.7 bits (130), Expect = 2.0e-04
Identity = 30/56 (53.57%), Postives = 36/56 (64.29%), Query Frame = 0


Query: 1   MMLGYAKMKYVGEAVGLFREMMEAGFEPDDMILVMEVGFELDEMMETEFMADLCLG 57
           M+ GY+KM Y  +AVGLFREMME GFEPD+M LV  +G   D       + DL LG
Sbjct: 205 MLSGYSKMGYAADAVGLFREMMEVGFEPDEMTLVSVLGACKD-------LGDLSLG 253

[Close]

BLAST of Clc04G13205 vs. ExPASy TrEMBL
Match: A0A2I4HLZ4 (pentatricopeptide repeat-containing protein At2g34400 isoform X2 OS=Juglans regia OX=51240 GN=LOC109019338 PE=4 SV=2)

HSP 1 Score: 54.7 bits (130), Expect = 2.0e-04
Identity = 30/56 (53.57%), Postives = 36/56 (64.29%), Query Frame = 0


Query: 1   MMLGYAKMKYVGEAVGLFREMMEAGFEPDDMILVMEVGFELDEMMETEFMADLCLG 57
           M+ GY+KM Y  +AVGLFREMME GFEPD+M LV  +G   D       + DL LG
Sbjct: 205 MLSGYSKMGYAADAVGLFREMMEVGFEPDEMTLVSVLGACKD-------LGDLSLG 253

[Close]

BLAST of Clc04G13205 vs. ExPASy TrEMBL
Match: A0A1Q3B4U7 (PPR domain-containing protein/PPR_2 domain-containing protein/PPR_3 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_06598 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.4e-04
Identity = 26/38 (68.42%), Postives = 31/38 (81.58%), Query Frame = 0


Query: 1   MMLGYAKMKYVGEAVGLFREMMEAGFEPDDMILVMEVG 39
           M+ GY+KM + GEAVGLFR MMEAGFEPD+M LV  +G
Sbjct: 202 MISGYSKMGFGGEAVGLFRRMMEAGFEPDEMTLVSILG 239

The following BLAST results are available for this feature:

BLAST of Clc04G13205 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038889591.1	2.4e-04	65.79	pentatricopeptide repeat-containing protein At2g34400 [Benincasa hispida]	[more]
XP_008451433.1	3.2e-04	65.79	PREDICTED: pentatricopeptide repeat-containing protein At2g34400 [Cucumis melo]	[more]
XP_004148338.1	3.2e-04	65.79	pentatricopeptide repeat-containing protein At2g34400 [Cucumis sativus] >KGN6116...	[more]
XP_018857160.2	4.1e-04	53.57	pentatricopeptide repeat-containing protein At2g34400 isoform X2 [Juglans regia]...	[more]
XP_042988533.1	4.1e-04	53.57	pentatricopeptide repeat-containing protein At2g34400 isoform X2 [Carya illinoin...	[more]

BLAST of Clc04G13205 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc04G13205 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LMG0	1.5e-04	65.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G060420 PE=4 SV=1	[more]
A0A1S3BRJ2	1.5e-04	65.79	pentatricopeptide repeat-containing protein At2g34400 OS=Cucumis melo OX=3656 GN...	[more]
A0A2I4HLW6	2.0e-04	53.57	pentatricopeptide repeat-containing protein At2g34400 isoform X1 OS=Juglans regi...	[more]
A0A2I4HLZ4	2.0e-04	53.57	pentatricopeptide repeat-containing protein At2g34400 isoform X2 OS=Juglans regi...	[more]
A0A1Q3B4U7	3.4e-04	68.42	PPR domain-containing protein/PPR_2 domain-containing protein/PPR_3 domain-conta...	[more]

BLAST of Clc04G13205 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 1..29 e-value: 3.5E-7 score: 28.0
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 1..28 score: 9.711769

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc04G13205.1	Clc04G13205.1	mRNA