Clc04G13090 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc04G13090
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	TPR_REGION domain-containing protein
Location	ClcChr04: 26325805 .. 26329119 (+)
RNA-Seq Expression	Clc04G13090
Synteny	Clc04G13090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGAAGCAAAGAAGGGATAGGAAGGGGGAATGGAGGGAAGTGTGTATTTTCTCTGCGCTTCTCTCCCATTTCTTCGAAACCAAGCTTCATTCTCTTCTTCCAATTCCACGTCTAAACGTAGCCCTATTCATGCTCACACTCAAGACCAAGAGATTCGGGTTTGCACCAATCGCACTTGCCGCCGTCAAGGTTCCTTTCACACCCTCGAAATTCTCAACGCCCTCGCACCTCCCACCATTACCGTCAATACCTCTGGTTGTTTAGGAAGGTGTGGCGCTGGCCCCAACCTTGCTGTTTTGCCCGATGGATTCGTCGTCGCCCATTGTGGCACGCCTGCTCGAGCTGCCGAGGTCATCATCCAGTTATCTGGTGGAGACTCAGATTCTGTTGGTGTCTCCAAGAGTTTGGAGGCTCTTGCTCTGAGGAAGAGAGCCCAATGTGAGTTGGAGGACGGGAATTTCTCCCAGGCCGACCTACTTCTTTCGCAGGTAAATTCTTCCGCCTTTTGCTATGTGATATTATTATATTATTGATGAGTGGTTTGAGAATTTTGTTCAGGATAATACAATATGTATGATGCCCTGCTTCAATTTGTTGCAGGCGATAGATTTAAAACCGTGTGGAGGTATCCATATAATATTCAAGGACAGGTGTTCTACTTCTAGTTCTATGTTGTATCTTATTATATACAAATCGTGGGATATATGCCCTATCTTATAGTAATTTTGTTACGATAATTGAATTTATGTCAATATGCGCTGACAATTATTATTGCTCGTTCAATTTTAAGTTGCCTAAGTTCTTCCCTTATGCTCCATGCTGTTGATAATTTATCCTGCATCTTTCTAGCATTTGTATATTTCTGCACTTAGAAATTGTTTATCCATGTTTTTACTAAAGCATCCGCATCCAGGATATTTAGTTACACAGAACTATTAAATTTTCAGGTCTATCGTAAGACTGGCACTGGGGAATCATCCTGGCGCCCTTGAAGATGCAAATGAAGCTCTAAAAGGAGCTCCTCGATATCAAGAGGTGAGAAGTATTTTAGTGATCATCATGTGCATTACATTCCATCTCAAGAACTAGACGCTAATTTTGAGAAAATAACTAGGCTGTTACACTTCAACGAGTCTGAATTGTGAATATAATCATTATTGAAGGGGGAGATATTGTTTGAAACTACCAAGTGTGGAGACCAGGTAGTAGTACCTCAATTTATGGACAAGGTTTACGATATATAGAGTTTCCGTTTCTTCCACTCCAAATGCTTTTAAGCAGATTTGTGTAGTTCTAGGCTTTAGGTGTCTAAGAGCAAAAGAAAATTGGGAGGACAAGAGGGAAAATTTGGACATGAACCTCAATTCTAATTGTAAATTCATGGCGGGCATCTACCTAGGATTTAATATCTTAAAGTTCTTGTAGCACCTAAATGTTGTCGGGTCAGACATGTTGTCCCGTAAGGATCAGTCGAGGTGTGTATAATCTGACCCAGATACTCACATATATTCATAATCATAATTGTAGATTCGGAGATCAACTTTTTGTTAGGCTCCTTGAATCTTTGTGATGCGTGAATCTTTATATGTTAATATTTCAAATAAATGTTGAAGGGAAAAAAATAGACAGACAGGACACTCTTGGATATTAAGAATAAAAAAGATAGCTCTTGGTTTAAAACTCAAAAGTCTGATGATTCTAAGCTATAATTTAGAGGTCCTTCGAACCCTCAACCAACTAATTGAACATGTAGCCCTTTTGGGATCATTACAAATTCTTGTCCTTTAATTGAGAAGATGTGAGAAAAAAAGGGATTCTGGCTCTAGAGTAGATTATCAGTCTTCCCGAGATCTGTTTCCTAATTTTTAACTTGCAGGCTTACATTTGCCAAGGTGACGCATTCTTAGCTATGGACCAATATGATTCAGCTGAAACGTCATATTCAACAGCTTTAGAAATTGATCCTTCAATTCGTCGTTCAAAGTCATTCAAGGTATTGATTCACTTAGCTTTATGTTAGAATGTGGATATAATATTAAATTTACCTTCACCTATCACGCCATCAACTTAAGCTTTTGAGTCAATCGGTGATATATATAATATTAAATTTACTTTCACCCATTAGCTTAACTTTTTGGGTAAATAGGTGATTTAACACTTTATATGAGTAGACTATGGGCAATTTCATCACTGGGACAAAAGAGACAACCAGTTTAATCAACCAACTTTTAGGATTTTTTGCTCCTTGGTTGGGATTGGCTAGAAGAATTTTGGAGCTACTTTTTCTGTTTTTGAGGACAAAATTCCTTATGTTTTAATTAAAAATATAACTGTTTTCAAAATGTTGTCACAAATGAGCAACCTACATTTCAGAACAACATAAGCTTTCTTCCTATAATAGTCATAAGCTTGTAGATATTAACTATAAGCTCCATTTACAAGCCACTTAATAGCTTGGAAAGCAACCTTGTTTCTGAAAATAGTCTTCCAAACAAGACTATTCGTTTATGAACTATTTTGGAATTCTGTTCTGATCCCAAACCGAGCACAGTTTCTGAAGCGTTTGCTATAGATTCTCACTTCTCTTTCAATCATACGATGCATACCATTTTGAGTGATCTTTTCCTCGTCATTTTGCAAAATGAGATTGAAGTCAGTTGTTGTCTAGTGCTGCTAGAATGCCGGTTTAATATTCTTTTAATATTTGCGCACCATTTCTTCAATAGGCGCGAGTTGCTAAACTTCAGGAGAAGCTAAGTGCTGTGAGAACACAATAAAATCTGAGATGTGGAGCAAAGAAGAAGGATAGTTAATGAAAACAGTTCGAGATCCAGTCCTTCCTTCAGGTTGTTTCCAGGTTTCAAATTTCTGACTCAGACTGTCGTTGAAATCTTAGTTAGGTTAAATATATAGAATTTAATTAAATTTGGAGTCTCATGCAAATCTGAATGGGAATTGGTATAATTCTACATGTGAATTATTTTAATATCAGGGAAAATAGGCGCCAGTTTGTAAATATTTGAAGAAAAGGTACTGATCAGAATTCAGAAATTTTGTCCCAATGGATTATATTGTCTACGTGCTTCAAAATTTCCGGCCAAATTTTGACAGCAGTAAAAATAATCTAATCCGGAGATTAATAATTTTAAGAATCTTCAGGCATGAGATAATTCCTAAATCATTTTTATGTTGGAGGAAAAACCTCGCAAATTTCACAATCCCATAACCATTAGTCTAGGGCTGCATTCACATGGAGAAAGTAATTACTGACGTAAGGAGGAAGATAGAGATTTTGAATTTGGCTTATTTAATTAT

mRNA sequence

CTGAAGCAAAGAAGGGATAGGAAGGGGGAATGGAGGGAAGTGTGTATTTTCTCTGCGCTTCTCTCCCATTTCTTCGAAACCAAGCTTCATTCTCTTCTTCCAATTCCACGTCTAAACGTAGCCCTATTCATGCTCACACTCAAGACCAAGAGATTCGGGTTTGCACCAATCGCACTTGCCGCCGTCAAGGTTCCTTTCACACCCTCGAAATTCTCAACGCCCTCGCACCTCCCACCATTACCGTCAATACCTCTGGTTGTTTAGGAAGGTGTGGCGCTGGCCCCAACCTTGCTGTTTTGCCCGATGGATTCGTCGTCGCCCATTGTGGCACGCCTGCTCGAGCTGCCGAGGTCATCATCCAGTTATCTGGTGGAGACTCAGATTCTGTTGGTGTCTCCAAGAGTTTGGAGGCTCTTGCTCTGAGGAAGAGAGCCCAATGTGAGTTGGAGGACGGGAATTTCTCCCAGGCCGACCTACTTCTTTCGCAGGCGATAGATTTAAAACCGTGTGGAGGTATCCATATAATATTCAAGGACAGGTGTTCTACTTCTAGTTCTATGTTGTCTATCGTAAGACTGGCACTGGGGAATCATCCTGGCGCCCTTGAAGATGCAAATGAAGCTCTAAAAGGAGCTCCTCGATATCAAGAGGGGGAGATATTGTTTGAAACTACCAAGTGTGGAGACCAGGTAGTAGTACCTCAATTTATGGACAAGGCTTACATTTGCCAAGGTGACGCATTCTTAGCTATGGACCAATATGATTCAGCTGAAACGTCATATTCAACAGCTTTAGAAATTGATCCTTCAATTCGTCGTTCAAAGTCATTCAAGGCGCGAGTTGCTAAACTTCAGGAGAAGCTAAGTGCTGTGAGAACACAATAAAATCTGAGATGTGGAGCAAAGAAGAAGGATAGTTAATGAAAACAGTTCGAGATCCAGTCCTTCCTTCAGGTTGTTTCCAGGTTTCAAATTTCTGACTCAGACTGTCGTTGAAATCTTAGTTAGGTTAAATATATAGAATTTAATTAAATTTGGAGTCTCATGCAAATCTGAATGGGAATTGGTATAATTCTACATGTGAATTATTTTAATATCAGGGAAAATAGGCGCCAGTTTGTAAATATTTGAAGAAAAGGTACTGATCAGAATTCAGAAATTTTGTCCCAATGGATTATATTGTCTACGTGCTTCAAAATTTCCGGCCAAATTTTGACAGCAGTAAAAATAATCTAATCCGGAGATTAATAATTTTAAGAATCTTCAGGCATGAGATAATTCCTAAATCATTTTTATGTTGGAGGAAAAACCTCGCAAATTTCACAATCCCATAACCATTAGTCTAGGGCTGCATTCACATGGAGAAAGTAATTACTGACGTAAGGAGGAAGATAGAGATTTTGAATTTGGCTTATTTAATTAT

Coding sequence (CDS)

ATGGAGGGAAGTGTGTATTTTCTCTGCGCTTCTCTCCCATTTCTTCGAAACCAAGCTTCATTCTCTTCTTCCAATTCCACGTCTAAACGTAGCCCTATTCATGCTCACACTCAAGACCAAGAGATTCGGGTTTGCACCAATCGCACTTGCCGCCGTCAAGGTTCCTTTCACACCCTCGAAATTCTCAACGCCCTCGCACCTCCCACCATTACCGTCAATACCTCTGGTTGTTTAGGAAGGTGTGGCGCTGGCCCCAACCTTGCTGTTTTGCCCGATGGATTCGTCGTCGCCCATTGTGGCACGCCTGCTCGAGCTGCCGAGGTCATCATCCAGTTATCTGGTGGAGACTCAGATTCTGTTGGTGTCTCCAAGAGTTTGGAGGCTCTTGCTCTGAGGAAGAGAGCCCAATGTGAGTTGGAGGACGGGAATTTCTCCCAGGCCGACCTACTTCTTTCGCAGGCGATAGATTTAAAACCGTGTGGAGGTATCCATATAATATTCAAGGACAGGTGTTCTACTTCTAGTTCTATGTTGTCTATCGTAAGACTGGCACTGGGGAATCATCCTGGCGCCCTTGAAGATGCAAATGAAGCTCTAAAAGGAGCTCCTCGATATCAAGAGGGGGAGATATTGTTTGAAACTACCAAGTGTGGAGACCAGGTAGTAGTACCTCAATTTATGGACAAGGCTTACATTTGCCAAGGTGACGCATTCTTAGCTATGGACCAATATGATTCAGCTGAAACGTCATATTCAACAGCTTTAGAAATTGATCCTTCAATTCGTCGTTCAAAGTCATTCAAGGCGCGAGTTGCTAAACTTCAGGAGAAGCTAAGTGCTGTGAGAACACAATAA

Protein sequence

MEGSVYFLCASLPFLRNQASFSSSNSTSKRSPIHAHTQDQEIRVCTNRTCRRQGSFHTLEILNALAPPTITVNTSGCLGRCGAGPNLAVLPDGFVVAHCGTPARAAEVIIQLSGGDSDSVGVSKSLEALALRKRAQCELEDGNFSQADLLLSQAIDLKPCGGIHIIFKDRCSTSSSMLSIVRLALGNHPGALEDANEALKGAPRYQEGEILFETTKCGDQVVVPQFMDKAYICQGDAFLAMDQYDSAETSYSTALEIDPSIRRSKSFKARVAKLQEKLSAVRTQ

Homology

[Close]

BLAST of Clc04G13090 vs. NCBI nr
Match: XP_038894326.1 (uncharacterized protein LOC120082956 [Benincasa hispida])

HSP 1 Score: 415.6 bits (1067), Expect = 3.4e-112
Identity = 231/297 (77.78%), Postives = 237/297 (79.80%), Query Frame = 0


Query: 1   MEGSVYFLCASLPFLRNQASF-----------SSSNSTSKRSPIHA--HTQDQEIRVCTN 60
           M+GSV FLCA LPFL NQ SF           SSSNS SKR PIHA  HT  QEIRVCTN
Sbjct: 1   MKGSVCFLCAPLPFLPNQPSFSSSSSSSSSSSSSSNSISKRIPIHAQTHTHHQEIRVCTN 60

Query: 61  RTCRRQGSFHTLEILNALAPPTITVNTSGCLGRCGAGPNLAVLPDGFVVAHCGTPARAAE 120
           RTCRRQGSFH LEILNALAPPTITVN+SGCLGRCGAGPN+AVLPDGFVV HCGTPARAAE
Sbjct: 61  RTCRRQGSFHALEILNALAPPTITVNSSGCLGRCGAGPNVAVLPDGFVVGHCGTPARAAE 120

Query: 121 VIIQLSGGDSDSVGVSKSLEALALRKRAQCELEDGNFSQADLLLSQAIDLKPCGGIHIIF 180
           VIIQLSGGDSDSVGVSKSLEALALRKRAQCELED NFSQADLLLSQAIDLKPCGGIHIIF
Sbjct: 121 VIIQLSGGDSDSVGVSKSLEALALRKRAQCELEDRNFSQADLLLSQAIDLKPCGGIHIIF 180

Query: 181 KDRCSTSSSMLSIVRLALGNHPGALEDANEALKGAPRYQEGEILFETTKCGDQVVVPQFM 240
           KDR        SIVRLALGNH GALEDANEAL+ AP Y E                    
Sbjct: 181 KDR--------SIVRLALGNHSGALEDANEALRIAPHYLE-------------------- 240

Query: 241 DKAYICQGDAFLAMDQYDSAETSYSTALEIDPSIRRSKSFKARVAKLQEKLSAVRTQ 285
             AYICQGDA LAM+ +DSAETSYSTALEIDPSIRRSKSFKARVAKLQEKLSAVRTQ
Sbjct: 241 --AYICQGDALLAMNHFDSAETSYSTALEIDPSIRRSKSFKARVAKLQEKLSAVRTQ 267

[Close]

BLAST of Clc04G13090 vs. NCBI nr
Match: XP_004137391.1 (uncharacterized protein LOC101213093 [Cucumis sativus] >XP_031740366.1 uncharacterized protein LOC101213093 [Cucumis sativus] >KGN63963.1 hypothetical protein Csa_013052 [Cucumis sativus])

HSP 1 Score: 403.7 bits (1036), Expect = 1.3e-108
Identity = 220/287 (76.66%), Postives = 232/287 (80.84%), Query Frame = 0


Query: 1   MEGSVYFLCASLPFLRN---QASFSSSNSTSKRSPIHAHTQDQEIRVCTNRTCRRQGSFH 60
           M+GSV FLC SLPFL N    +  SSS+S SKRS IHA T  QEIRVCTNRTCRRQGSFH
Sbjct: 1   MKGSVCFLCGSLPFLPNPNYNSFSSSSDSISKRSLIHAQTHHQEIRVCTNRTCRRQGSFH 60

Query: 61  TLEILNALAPPTITVNTSGCLGRCGAGPNLAVLPDGFVVAHCGTPARAAEVIIQLSGGDS 120
            LEILNALAPP I VN SGCLG+CGAGPN+AVLPDGFVV HCGTPARAA++IIQLSG DS
Sbjct: 61  ALEILNALAPPNIVVNPSGCLGKCGAGPNVAVLPDGFVVGHCGTPARAADLIIQLSGQDS 120

Query: 121 DSVGVSKSLEALALRKRAQCELEDGNFSQADLLLSQAIDLKPCGGIHIIFKDRCSTSSSM 180
           DSVG+SKSLEALALRKRAQCELEDGNFSQA+LLLSQAIDLKPCGGIHIIFKDR       
Sbjct: 121 DSVGISKSLEALALRKRAQCELEDGNFSQAELLLSQAIDLKPCGGIHIIFKDR------- 180

Query: 181 LSIVRLALGNHPGALEDANEALKGAPRYQEGEILFETTKCGDQVVVPQFMDKAYICQGDA 240
            SIVRLALGNH GALEDANEAL+ AP+Y E                      AYICQGDA
Sbjct: 181 -SIVRLALGNHSGALEDANEALRVAPQYLE----------------------AYICQGDA 240

Query: 241 FLAMDQYDSAETSYSTALEIDPSIRRSKSFKARVAKLQEKLSAVRTQ 285
           FLAMD +DSAE SYSTALEIDPSIRRSKSFKARVAKLQEKLSAVRTQ
Sbjct: 241 FLAMDHFDSAEISYSTALEIDPSIRRSKSFKARVAKLQEKLSAVRTQ 257

[Close]

BLAST of Clc04G13090 vs. NCBI nr
Match: XP_008437609.1 (PREDICTED: tetratricopeptide repeat protein 1 [Cucumis melo])

HSP 1 Score: 397.9 bits (1021), Expect = 7.3e-107
Identity = 219/287 (76.31%), Postives = 233/287 (81.18%), Query Frame = 0


Query: 1   MEGSVYFLCASLPFL--RNQASF-SSSNSTSKRSPIHAHTQDQEIRVCTNRTCRRQGSFH 60
           M+GSV FLCASLPFL   N  SF SSS+S SKRS IHA T  QEIRVCTNRTCRRQGSF 
Sbjct: 1   MKGSVCFLCASLPFLPNPNHTSFSSSSDSISKRSSIHAQTHHQEIRVCTNRTCRRQGSFL 60

Query: 61  TLEILNALAPPTITVNTSGCLGRCGAGPNLAVLPDGFVVAHCGTPARAAEVIIQLSGGDS 120
            LEIL+ALAPPTI VN SGCLG+CGAGPN+AVLPDGFV+ HCGTPARAA++IIQLSG DS
Sbjct: 61  ALEILSALAPPTIVVNPSGCLGKCGAGPNVAVLPDGFVIGHCGTPARAADLIIQLSGRDS 120

Query: 121 DSVGVSKSLEALALRKRAQCELEDGNFSQADLLLSQAIDLKPCGGIHIIFKDRCSTSSSM 180
           DSVGVSKSLEALALRKRAQCELEDGNFSQA+LLLSQAIDL PCGGIHIIFKDR       
Sbjct: 121 DSVGVSKSLEALALRKRAQCELEDGNFSQAELLLSQAIDLIPCGGIHIIFKDR------- 180

Query: 181 LSIVRLALGNHPGALEDANEALKGAPRYQEGEILFETTKCGDQVVVPQFMDKAYICQGDA 240
            S+VRLALGNH GALEDANEAL+ AP+Y E                      AYICQGD 
Sbjct: 181 -SVVRLALGNHSGALEDANEALRVAPQYLE----------------------AYICQGDV 240

Query: 241 FLAMDQYDSAETSYSTALEIDPSIRRSKSFKARVAKLQEKLSAVRTQ 285
           FLAMD++DSAE SYSTALEIDPSIRRSKSFKARVAKLQEKLSAVRTQ
Sbjct: 241 FLAMDKFDSAEISYSTALEIDPSIRRSKSFKARVAKLQEKLSAVRTQ 257

[Close]

BLAST of Clc04G13090 vs. NCBI nr
Match: XP_022923908.1 (small glutamine-rich tetratricopeptide repeat-containing protein beta isoform X1 [Cucurbita moschata])

HSP 1 Score: 369.4 bits (947), Expect = 2.8e-98
Identity = 203/284 (71.48%), Postives = 225/284 (79.23%), Query Frame = 0


Query: 1   MEGSVYFLCASLPFLRNQASFSSSNSTSKRSPIHAHTQDQEIRVCTNRTCRRQGSFHTLE 60
           M  ++  LC  L F  N+ SFSS++ +   +PI A  Q+QEIRVCTNRTCRRQGSF TLE
Sbjct: 1   MTATLCLLCIPLRFPPNRTSFSSTSIS--LTPIRA--QNQEIRVCTNRTCRRQGSFQTLE 60

Query: 61  ILNALAPPTITVNTSGCLGRCGAGPNLAVLPDGFVVAHCGTPARAAEVIIQLSGGDSDSV 120
            L+ALAPPTITVN SGCLG+CGAGPN+AVLPDGFVV HC TPARAAEVI+QLSGG SDS+
Sbjct: 61  TLSALAPPTITVNPSGCLGKCGAGPNVAVLPDGFVVGHCATPARAAEVIMQLSGGVSDSL 120

Query: 121 GVSKSLEALALRKRAQCELEDGNFSQADLLLSQAIDLKPCGGIHIIFKDRCSTSSSMLSI 180
           GVSKSLEALALRKRA+CE+EDGNFSQADLLLS+AI+LKPCGGIHIIFKDR        SI
Sbjct: 121 GVSKSLEALALRKRAECEVEDGNFSQADLLLSKAIELKPCGGIHIIFKDR--------SI 180

Query: 181 VRLALGNHPGALEDANEALKGAPRYQEGEILFETTKCGDQVVVPQFMDKAYICQGDAFLA 240
           VRLALGNH GALEDANEAL+ APRY E                      AYICQGD FL+
Sbjct: 181 VRLALGNHAGALEDANEALRVAPRYPE----------------------AYICQGDVFLS 240

Query: 241 MDQYDSAETSYSTALEIDPSIRRSKSFKARVAKLQEKLSAVRTQ 285
           MD +DSAE SYSTALEI+PSIRRSKSFKARVAKLQEKL+AVRTQ
Sbjct: 241 MDHFDSAEMSYSTALEIEPSIRRSKSFKARVAKLQEKLNAVRTQ 250

[Close]

BLAST of Clc04G13090 vs. NCBI nr
Match: XP_023519354.1 (small glutamine-rich tetratricopeptide repeat-containing protein beta [Cucurbita pepo subsp. pepo])

HSP 1 Score: 367.9 bits (943), Expect = 8.1e-98
Identity = 203/284 (71.48%), Postives = 224/284 (78.87%), Query Frame = 0


Query: 1   MEGSVYFLCASLPFLRNQASFSSSNSTSKRSPIHAHTQDQEIRVCTNRTCRRQGSFHTLE 60
           M  ++  LC  L F  N+ SFSS++ +   +PI A  Q+QEIRVCTNRTCRRQGSF TLE
Sbjct: 1   MTATLCLLCIPLRFPPNRTSFSSTSIS--LTPIRA--QNQEIRVCTNRTCRRQGSFQTLE 60

Query: 61  ILNALAPPTITVNTSGCLGRCGAGPNLAVLPDGFVVAHCGTPARAAEVIIQLSGGDSDSV 120
            L+ALAPPTITVN SGCLG+CGAGPN+AVLPDGFVV HC TPARAAEVI+QLSGG SDS+
Sbjct: 61  TLSALAPPTITVNPSGCLGKCGAGPNVAVLPDGFVVGHCATPARAAEVIMQLSGGVSDSL 120

Query: 121 GVSKSLEALALRKRAQCELEDGNFSQADLLLSQAIDLKPCGGIHIIFKDRCSTSSSMLSI 180
           GVSKSLEALAL KRA+CE+EDGNFSQADLLLS+AI+LKPCGGIHIIFKDR        SI
Sbjct: 121 GVSKSLEALALWKRAECEVEDGNFSQADLLLSKAIELKPCGGIHIIFKDR--------SI 180

Query: 181 VRLALGNHPGALEDANEALKGAPRYQEGEILFETTKCGDQVVVPQFMDKAYICQGDAFLA 240
           VRLALGNH GALEDANEAL+ APRY E                      AYICQGD FL+
Sbjct: 181 VRLALGNHAGALEDANEALRVAPRYPE----------------------AYICQGDVFLS 240

Query: 241 MDQYDSAETSYSTALEIDPSIRRSKSFKARVAKLQEKLSAVRTQ 285
           MD +DSAE SYSTALEIDPSIRRSKSFKARVAKLQEKL+AVRTQ
Sbjct: 241 MDHFDSAEMSYSTALEIDPSIRRSKSFKARVAKLQEKLNAVRTQ 250

[Close]

BLAST of Clc04G13090 vs. ExPASy TrEMBL
Match: A0A0A0LQA2 (TPR_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G031840 PE=4 SV=1)

HSP 1 Score: 403.7 bits (1036), Expect = 6.5e-109
Identity = 220/287 (76.66%), Postives = 232/287 (80.84%), Query Frame = 0


Query: 1   MEGSVYFLCASLPFLRN---QASFSSSNSTSKRSPIHAHTQDQEIRVCTNRTCRRQGSFH 60
           M+GSV FLC SLPFL N    +  SSS+S SKRS IHA T  QEIRVCTNRTCRRQGSFH
Sbjct: 1   MKGSVCFLCGSLPFLPNPNYNSFSSSSDSISKRSLIHAQTHHQEIRVCTNRTCRRQGSFH 60

Query: 61  TLEILNALAPPTITVNTSGCLGRCGAGPNLAVLPDGFVVAHCGTPARAAEVIIQLSGGDS 120
            LEILNALAPP I VN SGCLG+CGAGPN+AVLPDGFVV HCGTPARAA++IIQLSG DS
Sbjct: 61  ALEILNALAPPNIVVNPSGCLGKCGAGPNVAVLPDGFVVGHCGTPARAADLIIQLSGQDS 120

Query: 121 DSVGVSKSLEALALRKRAQCELEDGNFSQADLLLSQAIDLKPCGGIHIIFKDRCSTSSSM 180
           DSVG+SKSLEALALRKRAQCELEDGNFSQA+LLLSQAIDLKPCGGIHIIFKDR       
Sbjct: 121 DSVGISKSLEALALRKRAQCELEDGNFSQAELLLSQAIDLKPCGGIHIIFKDR------- 180

Query: 181 LSIVRLALGNHPGALEDANEALKGAPRYQEGEILFETTKCGDQVVVPQFMDKAYICQGDA 240
            SIVRLALGNH GALEDANEAL+ AP+Y E                      AYICQGDA
Sbjct: 181 -SIVRLALGNHSGALEDANEALRVAPQYLE----------------------AYICQGDA 240

Query: 241 FLAMDQYDSAETSYSTALEIDPSIRRSKSFKARVAKLQEKLSAVRTQ 285
           FLAMD +DSAE SYSTALEIDPSIRRSKSFKARVAKLQEKLSAVRTQ
Sbjct: 241 FLAMDHFDSAEISYSTALEIDPSIRRSKSFKARVAKLQEKLSAVRTQ 257

[Close]

BLAST of Clc04G13090 vs. ExPASy TrEMBL
Match: A0A1S3AUF9 (tetratricopeptide repeat protein 1 OS=Cucumis melo OX=3656 GN=LOC103482942 PE=4 SV=1)

HSP 1 Score: 397.9 bits (1021), Expect = 3.6e-107
Identity = 219/287 (76.31%), Postives = 233/287 (81.18%), Query Frame = 0


Query: 1   MEGSVYFLCASLPFL--RNQASF-SSSNSTSKRSPIHAHTQDQEIRVCTNRTCRRQGSFH 60
           M+GSV FLCASLPFL   N  SF SSS+S SKRS IHA T  QEIRVCTNRTCRRQGSF 
Sbjct: 1   MKGSVCFLCASLPFLPNPNHTSFSSSSDSISKRSSIHAQTHHQEIRVCTNRTCRRQGSFL 60

Query: 61  TLEILNALAPPTITVNTSGCLGRCGAGPNLAVLPDGFVVAHCGTPARAAEVIIQLSGGDS 120
            LEIL+ALAPPTI VN SGCLG+CGAGPN+AVLPDGFV+ HCGTPARAA++IIQLSG DS
Sbjct: 61  ALEILSALAPPTIVVNPSGCLGKCGAGPNVAVLPDGFVIGHCGTPARAADLIIQLSGRDS 120

Query: 121 DSVGVSKSLEALALRKRAQCELEDGNFSQADLLLSQAIDLKPCGGIHIIFKDRCSTSSSM 180
           DSVGVSKSLEALALRKRAQCELEDGNFSQA+LLLSQAIDL PCGGIHIIFKDR       
Sbjct: 121 DSVGVSKSLEALALRKRAQCELEDGNFSQAELLLSQAIDLIPCGGIHIIFKDR------- 180

Query: 181 LSIVRLALGNHPGALEDANEALKGAPRYQEGEILFETTKCGDQVVVPQFMDKAYICQGDA 240
            S+VRLALGNH GALEDANEAL+ AP+Y E                      AYICQGD 
Sbjct: 181 -SVVRLALGNHSGALEDANEALRVAPQYLE----------------------AYICQGDV 240

Query: 241 FLAMDQYDSAETSYSTALEIDPSIRRSKSFKARVAKLQEKLSAVRTQ 285
           FLAMD++DSAE SYSTALEIDPSIRRSKSFKARVAKLQEKLSAVRTQ
Sbjct: 241 FLAMDKFDSAEISYSTALEIDPSIRRSKSFKARVAKLQEKLSAVRTQ 257

[Close]

BLAST of Clc04G13090 vs. ExPASy TrEMBL
Match: A0A6J1EAV3 (small glutamine-rich tetratricopeptide repeat-containing protein beta isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111431489 PE=4 SV=1)

HSP 1 Score: 369.4 bits (947), Expect = 1.4e-98
Identity = 203/284 (71.48%), Postives = 225/284 (79.23%), Query Frame = 0


Query: 1   MEGSVYFLCASLPFLRNQASFSSSNSTSKRSPIHAHTQDQEIRVCTNRTCRRQGSFHTLE 60
           M  ++  LC  L F  N+ SFSS++ +   +PI A  Q+QEIRVCTNRTCRRQGSF TLE
Sbjct: 1   MTATLCLLCIPLRFPPNRTSFSSTSIS--LTPIRA--QNQEIRVCTNRTCRRQGSFQTLE 60

Query: 61  ILNALAPPTITVNTSGCLGRCGAGPNLAVLPDGFVVAHCGTPARAAEVIIQLSGGDSDSV 120
            L+ALAPPTITVN SGCLG+CGAGPN+AVLPDGFVV HC TPARAAEVI+QLSGG SDS+
Sbjct: 61  TLSALAPPTITVNPSGCLGKCGAGPNVAVLPDGFVVGHCATPARAAEVIMQLSGGVSDSL 120

Query: 121 GVSKSLEALALRKRAQCELEDGNFSQADLLLSQAIDLKPCGGIHIIFKDRCSTSSSMLSI 180
           GVSKSLEALALRKRA+CE+EDGNFSQADLLLS+AI+LKPCGGIHIIFKDR        SI
Sbjct: 121 GVSKSLEALALRKRAECEVEDGNFSQADLLLSKAIELKPCGGIHIIFKDR--------SI 180

Query: 181 VRLALGNHPGALEDANEALKGAPRYQEGEILFETTKCGDQVVVPQFMDKAYICQGDAFLA 240
           VRLALGNH GALEDANEAL+ APRY E                      AYICQGD FL+
Sbjct: 181 VRLALGNHAGALEDANEALRVAPRYPE----------------------AYICQGDVFLS 240

Query: 241 MDQYDSAETSYSTALEIDPSIRRSKSFKARVAKLQEKLSAVRTQ 285
           MD +DSAE SYSTALEI+PSIRRSKSFKARVAKLQEKL+AVRTQ
Sbjct: 241 MDHFDSAEMSYSTALEIEPSIRRSKSFKARVAKLQEKLNAVRTQ 250

[Close]

BLAST of Clc04G13090 vs. ExPASy TrEMBL
Match: A0A6J1KQA5 (uncharacterized protein LOC111495518 OS=Cucurbita maxima OX=3661 GN=LOC111495518 PE=4 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 8.2e-96
Identity = 199/284 (70.07%), Postives = 222/284 (78.17%), Query Frame = 0


Query: 1   MEGSVYFLCASLPFLRNQASFSSSNSTSKRSPIHAHTQDQEIRVCTNRTCRRQGSFHTLE 60
           M  ++  LC  L F  N+ SFSS++ +   +PI A  Q+QEIRVCTNRTCRRQGSF TLE
Sbjct: 1   MTATLCLLCIPLRFPPNRTSFSSTSVS--LTPIRA--QNQEIRVCTNRTCRRQGSFQTLE 60

Query: 61  ILNALAPPTITVNTSGCLGRCGAGPNLAVLPDGFVVAHCGTPARAAEVIIQLSGGDSDSV 120
            L ALAPPTITVN SGCLG+CGAGPN+AV PDGFVV HC TPARAAEVI++LSGG SDS+
Sbjct: 61  TLCALAPPTITVNPSGCLGKCGAGPNVAVFPDGFVVGHCATPARAAEVIMRLSGGVSDSL 120

Query: 121 GVSKSLEALALRKRAQCELEDGNFSQADLLLSQAIDLKPCGGIHIIFKDRCSTSSSMLSI 180
           GVSKSLEALALRKRA+CE+EDGNFSQADLLLS+AI+LKPCGGIHIIFKDR        SI
Sbjct: 121 GVSKSLEALALRKRAECEVEDGNFSQADLLLSKAIELKPCGGIHIIFKDR--------SI 180

Query: 181 VRLALGNHPGALEDANEALKGAPRYQEGEILFETTKCGDQVVVPQFMDKAYICQGDAFLA 240
           VRLALGN+  ALEDANEAL+ AP+Y E                      AYICQGD FL+
Sbjct: 181 VRLALGNYAAALEDANEALRVAPQYPE----------------------AYICQGDVFLS 240

Query: 241 MDQYDSAETSYSTALEIDPSIRRSKSFKARVAKLQEKLSAVRTQ 285
           MD +DSAE SYSTALEIDPSIRRSKSFKARVAKLQEKL+AVRTQ
Sbjct: 241 MDHFDSAEISYSTALEIDPSIRRSKSFKARVAKLQEKLNAVRTQ 250

[Close]

BLAST of Clc04G13090 vs. ExPASy TrEMBL
Match: A0A6J1C6P2 (sperm-associated antigen 1 OS=Momordica charantia OX=3673 GN=LOC111008751 PE=4 SV=1)

HSP 1 Score: 351.3 bits (900), Expect = 3.8e-93
Identity = 195/286 (68.18%), Postives = 215/286 (75.17%), Query Frame = 0


Query: 1   MEGSVYFLC---ASLPFLRNQASFSSSNSTSKRSPIHAHTQDQEIRVCTNRTCRRQGSFH 60
           M+ +  F+C   A    L N  SFS+S S  KRSPI  H  +QEIRVCTNRTCRRQGSF 
Sbjct: 1   MKATAGFVCDPHAPFRLLPNHTSFSTSISRYKRSPIRFHAHNQEIRVCTNRTCRRQGSFQ 60

Query: 61  TLEILNALAPPTITVNTSGCLGRCGAGPNLAVLPDGFVVAHCGTPARAAEVIIQL--SGG 120
           TLE LN LAPPTITVN+ GCLG+CGAGPN+AVLPDGFVV HCGTPARAAE+++ L  SGG
Sbjct: 61  TLETLNGLAPPTITVNSCGCLGKCGAGPNVAVLPDGFVVGHCGTPARAAELMMGLSGSGG 120

Query: 121 DSDSVGVSKSLEALALRKRAQCELEDGNFSQADLLLSQAIDLKPCGGIHIIFKDRCSTSS 180
             D + VSKSLEALALRKRA+ E+E+G+FSQADL LSQAI+LKPCGGIHIIFKDR     
Sbjct: 121 GYDPLSVSKSLEALALRKRAETEMEEGDFSQADLHLSQAIELKPCGGIHIIFKDR----- 180

Query: 181 SMLSIVRLALGNHPGALEDANEALKGAPRYQEGEILFETTKCGDQVVVPQFMDKAYICQG 240
              SIVRLA GN+ GALEDANEALK AP+Y EG                      YICQG
Sbjct: 181 ---SIVRLAQGNYSGALEDANEALKVAPQYTEG----------------------YICQG 240

Query: 241 DAFLAMDQYDSAETSYSTALEIDPSIRRSKSFKARVAKLQEKLSAV 282
           DAF AMD +DSAETSYSTALEIDPSIRRSKSFKARV KLQEKLSAV
Sbjct: 241 DAFFAMDHFDSAETSYSTALEIDPSIRRSKSFKARVDKLQEKLSAV 256

[Close]

BLAST of Clc04G13090 vs. TAIR 10
Match: AT3G17670.1 (tetratricopeptide repeat (TPR)-containing protein )

HSP 1 Score: 228.8 bits (582), Expect = 5.5e-60
Identity = 124/244 (50.82%), Postives = 156/244 (63.93%), Query Frame = 0


Query: 38  QDQEIRVCTNRTCRRQGSFHTLEILNALAPPTITVNTSGCLGRCGAGPNLAVLPDGFVVA 97
           Q +EIRVCTNRTCRRQGSF  LE L ALAPP + V    CLGRCG+GPNL  LP G ++ 
Sbjct: 17  QVKEIRVCTNRTCRRQGSFQILETLTALAPPELRVTHCACLGRCGSGPNLVALPQGLILR 76

Query: 98  HCGTPARAAEVIIQLSGGD---SDSVGVSKSLEALALRKRAQCELEDGNFSQADLLLSQA 157
           HC TP+RAAE++  L G     S S  V+ +L ALAL   A  +++ GNFS+A+ LL+QA
Sbjct: 77  HCATPSRAAEILFSLCGDGREASSSSAVTDALTALALTNNALSQIDAGNFSEAEALLTQA 136

Query: 158 IDLKPCGGIHIIFKDRCSTSSSMLSIVRLALGNHPGALEDANEALKGAPRYQEGEILFET 217
           ++LKP GG+H IFK R        S+ +L + ++ GALED ++AL  AP Y E       
Sbjct: 137 LELKPYGGLHRIFKHR--------SVAKLGMLDYSGALEDISQALALAPNYSE------- 196

Query: 218 TKCGDQVVVPQFMDKAYICQGDAFLAMDQYDSAETSYSTALEIDPSIRRSKSFKARVAKL 277
                           YICQGD ++A  QYD AE SY T LEIDPS+RRSK FKAR+AKL
Sbjct: 197 ---------------PYICQGDVYVAKGQYDLAEKSYLTCLEIDPSLRRSKPFKARIAKL 230

Query: 278 QEKL 279
           Q+K+
Sbjct: 257 QQKV 230

[Close]

BLAST of Clc04G13090 vs. TAIR 10
Match: AT3G17670.2 (tetratricopeptide repeat (TPR)-containing protein )

HSP 1 Score: 228.8 bits (582), Expect = 5.5e-60
Identity = 124/244 (50.82%), Postives = 156/244 (63.93%), Query Frame = 0


Query: 38  QDQEIRVCTNRTCRRQGSFHTLEILNALAPPTITVNTSGCLGRCGAGPNLAVLPDGFVVA 97
           Q +EIRVCTNRTCRRQGSF  LE L ALAPP + V    CLGRCG+GPNL  LP G ++ 
Sbjct: 17  QVKEIRVCTNRTCRRQGSFQILETLTALAPPELRVTHCACLGRCGSGPNLVALPQGLILR 76

Query: 98  HCGTPARAAEVIIQLSGGD---SDSVGVSKSLEALALRKRAQCELEDGNFSQADLLLSQA 157
           HC TP+RAAE++  L G     S S  V+ +L ALAL   A  +++ GNFS+A+ LL+QA
Sbjct: 77  HCATPSRAAEILFSLCGDGREASSSSAVTDALTALALTNNALSQIDAGNFSEAEALLTQA 136

Query: 158 IDLKPCGGIHIIFKDRCSTSSSMLSIVRLALGNHPGALEDANEALKGAPRYQEGEILFET 217
           ++LKP GG+H IFK R        S+ +L + ++ GALED ++AL  AP Y E       
Sbjct: 137 LELKPYGGLHRIFKHR--------SVAKLGMLDYSGALEDISQALALAPNYSE------- 196

Query: 218 TKCGDQVVVPQFMDKAYICQGDAFLAMDQYDSAETSYSTALEIDPSIRRSKSFKARVAKL 277
                           YICQGD ++A  QYD AE SY T LEIDPS+RRSK FKAR+AKL
Sbjct: 197 ---------------PYICQGDVYVAKGQYDLAEKSYLTCLEIDPSLRRSKPFKARIAKL 230

Query: 278 QEKL 279
           Q+K+
Sbjct: 257 QQKV 230

[Close]

BLAST of Clc04G13090 vs. TAIR 10
Match: AT4G12400.1 (stress-inducible protein, putative )

HSP 1 Score: 42.0 bits (97), Expect = 9.5e-04
Identity = 33/135 (24.44%), Postives = 57/135 (42.22%), Query Frame = 0


Query: 132 RKRAQCELEDGNFSQADLLLSQAIDLKPCGGIHIIFKDRCSTSSSMLSIVRLALGNHPGA 191
           + +       G+++ A    ++AI+L P    HI++ +R ++ +S        L  +  A
Sbjct: 6   KSKGNAAFSSGDYATAITHFTEAINLSPTN--HILYSNRSASYAS--------LHRYEEA 65

Query: 192 LEDANEALKGAPRYQEGEILFETTKCGDQVVVPQFMDKAYICQGDAFLAMDQYDSAETSY 251
           L DA + ++  P + +G                      Y   G AF+ + ++D A  SY
Sbjct: 66  LSDAKKTIELKPDWSKG----------------------YSRLGAAFIGLSKFDEAVDSY 108

Query: 252 STALEIDPSIRRSKS 267
              LEIDPS    KS
Sbjct: 126 KKGLEIDPSNEMLKS 108

[Close]

BLAST of Clc04G13090 vs. TAIR 10
Match: AT4G12400.2 (stress-inducible protein, putative )

HSP 1 Score: 42.0 bits (97), Expect = 9.5e-04
Identity = 33/135 (24.44%), Postives = 57/135 (42.22%), Query Frame = 0


Query: 132 RKRAQCELEDGNFSQADLLLSQAIDLKPCGGIHIIFKDRCSTSSSMLSIVRLALGNHPGA 191
           + +       G+++ A    ++AI+L P    HI++ +R ++ +S        L  +  A
Sbjct: 6   KSKGNAAFSSGDYATAITHFTEAINLSPTN--HILYSNRSASYAS--------LHRYEEA 65

Query: 192 LEDANEALKGAPRYQEGEILFETTKCGDQVVVPQFMDKAYICQGDAFLAMDQYDSAETSY 251
           L DA + ++  P + +G                      Y   G AF+ + ++D A  SY
Sbjct: 66  LSDAKKTIELKPDWSKG----------------------YSRLGAAFIGLSKFDEAVDSY 108

Query: 252 STALEIDPSIRRSKS 267
              LEIDPS    KS
Sbjct: 126 KKGLEIDPSNEMLKS 108

The following BLAST results are available for this feature:

BLAST of Clc04G13090 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038894326.1	3.4e-112	77.78	uncharacterized protein LOC120082956 [Benincasa hispida]	[more]
XP_004137391.1	1.3e-108	76.66	uncharacterized protein LOC101213093 [Cucumis sativus] >XP_031740366.1 uncharact...	[more]
XP_008437609.1	7.3e-107	76.31	PREDICTED: tetratricopeptide repeat protein 1 [Cucumis melo]	[more]
XP_022923908.1	2.8e-98	71.48	small glutamine-rich tetratricopeptide repeat-containing protein beta isoform X1...	[more]
XP_023519354.1	8.1e-98	71.48	small glutamine-rich tetratricopeptide repeat-containing protein beta [Cucurbita...	[more]

BLAST of Clc04G13090 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc04G13090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQA2	6.5e-109	76.66	TPR_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G031840 ...	[more]
A0A1S3AUF9	3.6e-107	76.31	tetratricopeptide repeat protein 1 OS=Cucumis melo OX=3656 GN=LOC103482942 PE=4 ...	[more]
A0A6J1EAV3	1.4e-98	71.48	small glutamine-rich tetratricopeptide repeat-containing protein beta isoform X1...	[more]
A0A6J1KQA5	8.2e-96	70.07	uncharacterized protein LOC111495518 OS=Cucurbita maxima OX=3661 GN=LOC111495518...	[more]
A0A6J1C6P2	3.8e-93	68.18	sperm-associated antigen 1 OS=Momordica charantia OX=3673 GN=LOC111008751 PE=4 S...	[more]

BLAST of Clc04G13090 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G17670.1	5.5e-60	50.82	tetratricopeptide repeat (TPR)-containing protein	[more]
AT3G17670.2	5.5e-60	50.82	tetratricopeptide repeat (TPR)-containing protein	[more]
AT4G12400.1	9.5e-04	24.44	stress-inducible protein, putative	[more]
AT4G12400.2	9.5e-04	24.44	stress-inducible protein, putative	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019734	Tetratricopeptide repeat	SMART	SM00028	tpr_5	coord: 228..261 e-value: 0.0027 score: 26.9 coord: 172..205 e-value: 440.0 score: 0.5 coord: 128..161 e-value: 200.0 score: 3.6
IPR019734	Tetratricopeptide repeat	PROSITE	PS50005	TPR	coord: 228..261 score: 10.1779
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 122..284 e-value: 1.1E-14 score: 56.4
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 127..277
None	No IPR available	GENE3D	3.40.30.10	Glutaredoxin	coord: 39..118 e-value: 6.2E-8 score: 34.7
None	No IPR available	PANTHER	PTHR47682	TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN	coord: 19..283
None	No IPR available	CDD	cd02980	TRX_Fd_family	coord: 42..109 e-value: 8.90022E-14 score: 63.4152
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	52833	Thioredoxin-like	coord: 41..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc04G13090.2	Clc04G13090.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding