Clc04G12780 (gene) Watermelon (cordophanus) v2

Overview
NameClc04G12780
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionGlutathione S-transferase U9-like
LocationClcChr04: 26148023 .. 26148367 (-)
RNA-Seq ExpressionClc04G12780
SyntenyClc04G12780
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCCTCCCCTTTTGCTACAAGATCCCTACAAACGAGCCCAAATTCGATTTTGGGCTGATTTCATCCATAACCAGATGCTACAATTTTGCAACTGATATACTTTGGATTGATTTTCATTTTCTTGAGATAAACAATTTTGTGTTGATGCAGTTGCTTGAGGGTCTGGTTTCGGTAACGAAGACAGAGGGAGAAGCACAAGAAACAACCATTAAAGAAGTAAAAGAGATGTTAAAAGGGTTTGAAGAACATGGGTTGAAAAGCTTGTTGGGGGAAGGGATCAGTCCATTTGTTAAGGGAGAAAAACCAATCGGAATAGAAATTAAAATTTTGTTATATTCATAA

mRNA sequence

ATGGGCCTCCCCTTTTGCTACAAGATCCCTACAAACGAGCCCAAATTCGATTTTGGGCTGATTTCATCCATAACCAGATGCTACAATTTTGCAACTGATATACTTTGGATTGATTTTCATTTTCTTGAGATAAACAATTTTGTGTTGATGCAGTTGCTTGAGGGTCTGGTTTCGGTAACGAAGACAGAGGGAGAAGCACAAGAAACAACCATTAAAGAAGTAAAAGAGATGTTAAAAGGGTTTGAAGAACATGGGTTGAAAAGCTTGTTGGGGGAAGGGATCAGTCCATTTGTTAAGGGAGAAAAACCAATCGGAATAGAAATTAAAATTTTGTTATATTCATAA

Coding sequence (CDS)

ATGGGCCTCCCCTTTTGCTACAAGATCCCTACAAACGAGCCCAAATTCGATTTTGGGCTGATTTCATCCATAACCAGATGCTACAATTTTGCAACTGATATACTTTGGATTGATTTTCATTTTCTTGAGATAAACAATTTTGTGTTGATGCAGTTGCTTGAGGGTCTGGTTTCGGTAACGAAGACAGAGGGAGAAGCACAAGAAACAACCATTAAAGAAGTAAAAGAGATGTTAAAAGGGTTTGAAGAACATGGGTTGAAAAGCTTGTTGGGGGAAGGGATCAGTCCATTTGTTAAGGGAGAAAAACCAATCGGAATAGAAATTAAAATTTTGTTATATTCATAA

Protein sequence

MGLPFCYKIPTNEPKFDFGLISSITRCYNFATDILWIDFHFLEINNFVLMQLLEGLVSVTKTEGEAQETTIKEVKEMLKGFEEHGLKSLLGEGISPFVKGEKPIGIEIKILLYS
Homology
[Close]
BLAST of Clc04G12780 vs. NCBI nr
Match: TYJ98888.1 (glutathione S-transferase U9-like [Cucumis melo var. makuwa])

HSP 1 Score: 68.6 bits (166), Expect = 4.1e-08
Identity = 40/66 (60.61%), Postives = 48/66 (72.73%), Query Frame = 0 

Query: 46  NFVLMQLLEGLVSVTKTEGEAQETTIKEVKEMLKGFEEHGLKSLLGEGISPFVKGEKPIG 105
           +FV  QL +GL+   KTEGEAQE  IKEVKE LK  EE GLKSLLGEG SPFV G++   
Sbjct: 103 DFVQNQLFDGLLLAMKTEGEAQEKAIKEVKEKLKVVEEQGLKSLLGEG-SPFVNGDELGY 162

Query: 106 IEIKIL 112
           ++I +L
Sbjct: 163 LDIGML 167

[Close]
BLAST of Clc04G12780 vs. NCBI nr
Match: KAA0036080.1 (glutathione S-transferase U9-like [Cucumis melo var. makuwa])

HSP 1 Score: 68.6 bits (166), Expect = 4.1e-08
Identity = 40/66 (60.61%), Postives = 48/66 (72.73%), Query Frame = 0 

Query: 46  NFVLMQLLEGLVSVTKTEGEAQETTIKEVKEMLKGFEEHGLKSLLGEGISPFVKGEKPIG 105
           +FV  QL +GL+   KTEGEAQE  IKEVKE LK  EE GLKSLLGEG SPFV G++   
Sbjct: 333 DFVQNQLFDGLLLAMKTEGEAQEKAIKEVKEKLKVVEEQGLKSLLGEG-SPFVNGDELGY 392

Query: 106 IEIKIL 112
           ++I +L
Sbjct: 393 LDIGML 397

[Close]
BLAST of Clc04G12780 vs. NCBI nr
Match: XP_038896026.1 (glutathione S-transferase U9-like [Benincasa hispida])

HSP 1 Score: 68.2 bits (165), Expect = 5.4e-08
Identity = 38/66 (57.58%), Postives = 47/66 (71.21%), Query Frame = 0 

Query: 46  NFVLMQLLEGLVSVTKTEGEAQETTIKEVKEMLKGFEEHGLKSLLGEGISPFVKGEKPIG 105
           +FV  QL EG+  + KTEGEAQE  IKEVKE L+  EE GLKSLLGE  SPFV G++   
Sbjct: 103 DFVQKQLFEGMFLLMKTEGEAQEKGIKEVKEKLRVLEEQGLKSLLGEESSPFVNGDELGY 162

Query: 106 IEIKIL 112
           ++I +L
Sbjct: 163 LDIVML 168

[Close]
BLAST of Clc04G12780 vs. NCBI nr
Match: XP_004151688.2 (glutathione S-transferase U9 [Cucumis sativus] >KGN63996.1 hypothetical protein Csa_013185 [Cucumis sativus])

HSP 1 Score: 66.6 bits (161), Expect = 1.6e-07
Identity = 39/66 (59.09%), Postives = 47/66 (71.21%), Query Frame = 0 

Query: 46  NFVLMQLLEGLVSVTKTEGEAQETTIKEVKEMLKGFEEHGLKSLLGEGISPFVKGEKPIG 105
           +FV  QL +GL+   KTEGEAQE  IKEVKE LK  EE GLKSLL EG SPFV G++   
Sbjct: 103 DFVQNQLFDGLLLAMKTEGEAQEKAIKEVKEKLKVIEEQGLKSLLAEG-SPFVNGDELGY 162

Query: 106 IEIKIL 112
           ++I +L
Sbjct: 163 LDIGML 167

[Close]
BLAST of Clc04G12780 vs. NCBI nr
Match: XP_008466878.2 (PREDICTED: glutathione S-transferase U9-like, partial [Cucumis melo])

HSP 1 Score: 66.2 bits (160), Expect = 2.0e-07
Identity = 38/61 (62.30%), Postives = 45/61 (73.77%), Query Frame = 0 

Query: 51  QLLEGLVSVTKTEGEAQETTIKEVKEMLKGFEEHGLKSLLGEGISPFVKGEKPIGIEIKI 110
           QL +GL+   KTEGEAQE  IKEVKE LK  EE GLKSLLGEG SPFV G++   ++I +
Sbjct: 1   QLFDGLLLAMKTEGEAQEKAIKEVKEKLKVVEEQGLKSLLGEG-SPFVNGDELGYLDIGM 60

Query: 111 L 112
           L
Sbjct: 61  L 60

[Close]
BLAST of Clc04G12780 vs. ExPASy TrEMBL
Match: A0A5A7SYD7 (Glutathione S-transferase U9-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold112G00740 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.0e-08
Identity = 40/66 (60.61%), Postives = 48/66 (72.73%), Query Frame = 0 

Query: 46  NFVLMQLLEGLVSVTKTEGEAQETTIKEVKEMLKGFEEHGLKSLLGEGISPFVKGEKPIG 105
           +FV  QL +GL+   KTEGEAQE  IKEVKE LK  EE GLKSLLGEG SPFV G++   
Sbjct: 333 DFVQNQLFDGLLLAMKTEGEAQEKAIKEVKEKLKVVEEQGLKSLLGEG-SPFVNGDELGY 392

Query: 106 IEIKIL 112
           ++I +L
Sbjct: 393 LDIGML 397

[Close]
BLAST of Clc04G12780 vs. ExPASy TrEMBL
Match: A0A5D3BL29 (Glutathione S-transferase U9-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G00840 PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.0e-08
Identity = 40/66 (60.61%), Postives = 48/66 (72.73%), Query Frame = 0 

Query: 46  NFVLMQLLEGLVSVTKTEGEAQETTIKEVKEMLKGFEEHGLKSLLGEGISPFVKGEKPIG 105
           +FV  QL +GL+   KTEGEAQE  IKEVKE LK  EE GLKSLLGEG SPFV G++   
Sbjct: 103 DFVQNQLFDGLLLAMKTEGEAQEKAIKEVKEKLKVVEEQGLKSLLGEG-SPFVNGDELGY 162

Query: 106 IEIKIL 112
           ++I +L
Sbjct: 163 LDIGML 167

[Close]
BLAST of Clc04G12780 vs. ExPASy TrEMBL
Match: A0A0A0LVI6 (Glutathione s-transferase OS=Cucumis sativus OX=3659 GN=Csa_1G033160 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 7.5e-08
Identity = 39/66 (59.09%), Postives = 47/66 (71.21%), Query Frame = 0 

Query: 46  NFVLMQLLEGLVSVTKTEGEAQETTIKEVKEMLKGFEEHGLKSLLGEGISPFVKGEKPIG 105
           +FV  QL +GL+   KTEGEAQE  IKEVKE LK  EE GLKSLL EG SPFV G++   
Sbjct: 103 DFVQNQLFDGLLLAMKTEGEAQEKAIKEVKEKLKVIEEQGLKSLLAEG-SPFVNGDELGY 162

Query: 106 IEIKIL 112
           ++I +L
Sbjct: 163 LDIGML 167

[Close]
BLAST of Clc04G12780 vs. ExPASy TrEMBL
Match: A0A1S3CS89 (glutathione S-transferase U9-like OS=Cucumis melo OX=3656 GN=LOC103504196 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 9.8e-08
Identity = 38/61 (62.30%), Postives = 45/61 (73.77%), Query Frame = 0 

Query: 51  QLLEGLVSVTKTEGEAQETTIKEVKEMLKGFEEHGLKSLLGEGISPFVKGEKPIGIEIKI 110
           QL +GL+   KTEGEAQE  IKEVKE LK  EE GLKSLLGEG SPFV G++   ++I +
Sbjct: 1   QLFDGLLLAMKTEGEAQEKAIKEVKEKLKVVEEQGLKSLLGEG-SPFVNGDELGYLDIGM 60

Query: 111 L 112
           L
Sbjct: 61  L 60

[Close]
BLAST of Clc04G12780 vs. ExPASy TrEMBL
Match: A0A5D3BIH2 (Glutathione S-transferase U9-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G00820 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.7e-07
Identity = 39/66 (59.09%), Postives = 47/66 (71.21%), Query Frame = 0 

Query: 46  NFVLMQLLEGLVSVTKTEGEAQETTIKEVKEMLKGFEEHGLKSLLGEGISPFVKGEKPIG 105
           +FV  QL +GL+   KTEGEAQE  IKEVKE LK  EE GLKSLLGEG S FV G++   
Sbjct: 103 DFVQNQLFDGLLLAMKTEGEAQEKAIKEVKEKLKVVEEQGLKSLLGEG-SSFVNGDELGY 162

Query: 106 IEIKIL 112
           ++I +L
Sbjct: 163 LDIGML 167

The following BLAST results are available for this feature:
BLAST of Clc04G12780 vs. NCBI nr
Match NameE-valueIdentityDescription
TYJ98888.14.1e-0860.61glutathione S-transferase U9-like [Cucumis melo var. makuwa][more]
KAA0036080.14.1e-0860.61glutathione S-transferase U9-like [Cucumis melo var. makuwa][more]
XP_038896026.15.4e-0857.58glutathione S-transferase U9-like [Benincasa hispida][more]
XP_004151688.21.6e-0759.09glutathione S-transferase U9 [Cucumis sativus] >KGN63996.1 hypothetical protein ... [more]
XP_008466878.22.0e-0762.30PREDICTED: glutathione S-transferase U9-like, partial [Cucumis melo][more]
BLAST of Clc04G12780 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc04G12780 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SYD72.0e-0860.61Glutathione S-transferase U9-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3BL292.0e-0860.61Glutathione S-transferase U9-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A0A0LVI67.5e-0859.09Glutathione s-transferase OS=Cucumis sativus OX=3659 GN=Csa_1G033160 PE=3 SV=1[more]
A0A1S3CS899.8e-0862.30glutathione S-transferase U9-like OS=Cucumis melo OX=3656 GN=LOC103504196 PE=4 S... [more]
A0A5D3BIH21.7e-0759.09Glutathione S-transferase U9-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
BLAST of Clc04G12780 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc04G12780.2Clc04G12780.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006749 glutathione metabolic process
cellular_component GO:0005737 cytoplasm
molecular_function GO:0004364 glutathione transferase activity