Clc04G12740 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc04G12740
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Mini zinc finger
Location	ClcChr04: 26105629 .. 26109572 (-)
RNA-Seq Expression	Clc04G12740
Synteny	Clc04G12740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGAAGAAACGTCAAGTAGTAGTGAAAAGATCAGATGGAAGATCATCATCATCATCATCATCATCAAATAATAATAGAAATAGCAGTTCATCTTCAATAGTAAGAAGTGTGGTTAGATATGGAGAGTGCCAGAAGAATCATGCTGCAAATATTGGTGGATATGCTGTTGATGGCTGCAGAGAGTTCCTAGCAACTGGTGAAGAAGGCTCTAATGGAGCTCTCACTTGTGCTGCATGTGGTTGCCACAGGAATTTTCATAGAAGAGAAGTTGAATCTGAAGTGGTTTGTGAGTATTCTCCTCCATAAATGGCTTCATTTCATTTTCTTTTTTTCTTTTCAATATATAATACTACACTCAAAATTTATATTCAATTCTAAATACCCTTTTCATATATTTTTATTATTGATTTGTTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACGTACAATTGGTTGGTTGTGCTTTGAAGAATTGAGAGATTTGTAATTAAATTGTGTATTATTGAGATTTCCCTATTTTGCTTCTGTTTAATTTCTTCTTCTTCTTCTTCTTCTTTTTTTCCTTTGTGTAAAGTCTCTTCTTTGAATAGAAAATGACTATTTGTGATTGAAAAGAAAAGACAAAAGCAAAAGTTGAACACTACAGTTTAGTGTTGTATTGTCAAGAACAACTAATTTCTTCACCCTCTCTCTCCTTATTTTTAGATTCCCATTGTTTTTATTGTTAGATTCTCATTGTTTTTATTTTTAATCTCTCTCACCAATTACCCAATATGAGGAATGGCTATATAATATACTTTGTCTCATATTACCCTCTATAACTTAAGACGTAACATTACAGCAATCGACAATAGATTCTAAATTTGATTCAAATATTCCTATTAAACCTATATTCGTTGGAAAGATTTTTGCGAAGATTTTGTGATTTTTAACAACGTTTTAATGTCGTTGCTAAAAACAATATTTCTTGTATTACAGTTGGTTGTGATGACAATAATAGATTTTATAGCTTAGTTGGGATATATTATCAGTATGTCAAATCTTTAATTGGGTAAAGTTAGATGGGGCGAGATGTATCATTATCAGCTAGTTTAATTTTGTGCAAGGTATTGAATGAAAAAGTTCAATCTTCTTGTAGTCTCCAATAATAGCTTTTGTAATCATCTTTTGTGAAATGAAGTCCTCTCTTTTGAGCTTGGGATACGATAAGATTGCTAAAAATGTGTCAACCTACTAATTAAGATATCCTATAGTGCACCTTCAAATCTTTTCCTCCTATTAATATCCTTATTAAAAAAGGAAAAAAAAAAGAGAGAGAAAAGAAAGATAGATGATATATATATATATATATATATGAAATGTTTCTAAATTTTGATCTTAAACTTTGATTTTTAACATCAAGCCTTGTGTGTAGAAGCTTGTTTGCAAATTAGTAAATGATTTATCCACTTCCATTGAATACTATAAAAGATGAAGTCCATCATATTAAAGCTTAGAGGGCTACATTGAAATTGAAACAAGGCTACCTGGATCAACTAATAATTAAAGACAAACCCAATTTATCTGAATATATAAATTTATGGGCCTGCATGGATCAAACCATGACCTCATATAAATGGAAGTTACCTTATCTTTGAAGCAATCATTTGTGGAAAGAAATATTATTATATCACTCCTTCTCAAGCCCCACAGAAATCCAATCATATAGCACAACTTTGTAATACAAAATTATTTGCCAGTGAATTTTTTACTTGAATTAAGCTGACCTAAATTTTAAAATAAAATAAATAAATAAATAAACCCTATATATAGCTGTGCTGTTGGGTGAATTTGTTGTTTATGATAATATTGTTTGGCATTCTTTAAAGTTTTCTAATAGCATACATGTGAAACTTTTGTTTTCTTCTTGGCTGCCAATGGTGGATGGACAAACACAAAGTCCTGTGTTCTTTCAACATCACTTCACATTCTTTTAACTTCGTCATTTTAGTTAGAGTTGAATGTCATTTTACATCGCCTTCATCTTTGATTTGAAGGACTTTCCTCAATCAATTAACTTTTTAAAAAAAAAAAAGAATTTTTGGCGGATTAGAAATTGAAGTGGGTGATCAAAGCAACAAACACACAATTCTCTTTGATTTAGCAAGCATGTGATTAATCAATTCTATCAAGTCATAAGAACTTTACAAAATTTGAAAGGAAACAAAAAATGAAACGAAAGGTTCAAACATTTGCATGTGCATATTGCCTTGTTATTCAAACATTTTCTCAATTCACTCAACCACAAAACAACAGGATATATATATAAATGATCATTTGGTTTAATTATATGATCAAAACCCCAAATTCATTGAATTTTGGTATGAACATATCAACTTCAATGTGATTTGATAACCAAAACCATTTACTGTTTGTCATGATCAATCAATAGTGAGGGAATATAAATTTGAAACTGTCTTCTTCAAGTATAAGAAAGTCTCCAGTTTCCCTAGCCTATAGGTAATGTTTTTCCCTTTTTTGTTTCCTTTTTGACAAAGGCAAAATAAAGGGTGAAAGAATTCAAATTCTTGTAGATAATGTTAATGGAGTTGCTATTCAGTTTCCTATAGGGAAAGGTAGTAAAACATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTAAGTATCCAAGTGAATACTACTCAATCAATCAAAAATAACATATATCTTAACCAATTAAACTATACTTTAGTTAACAAAAAGTAGCAAAGTTTCATTTCCTTTTAATATAACTTAAGATAGAACATAATTGTCATGACCTAGTTAAGACACCAATGAACTTTCTAAGATTAGATCTAAATAACGTAGCTCTTAATTGGAAGGCTTCCTCTAGCCTTTTTCCTACTTTCTCTTTTGTATCAAGTTGTTCTCTGGCTTTCTTTGTACATATCGGGCCCTCTTCCCTTTTGAATGAATGCATCACTACAAGGCCCTGAGCATGAAGAGGGTGCTAAAGATCAATGTGTCAACCTAATTGAGATATCCTCTAGTATTTTGTTTAAAAAAAAAAAAAAAAAACACTTCTATGTAGCTCAACTTAGACTACTACTCAATCAAGAATAACATATACCTTAACACAAAGTTATACCCAAATTGACAAAAGAAGTTCATTATTTTGTAATATATTATTTAGGATATATAAAACGTTGCTCAACTGGTTAAGATGCCAAAAACTTTTCTAAAGATCAGATGTTCAAATCTTCATATTATCACCCATGAGCCGTTTAAAGTGTATACAACTCAGAAATGGAGAGAGTAAATGGATTTGTACGTGATTCAATTTTTCTTTTTTTTAAGGCCTCCAAACAAAAAAAATAATAATAATTAATATGCAGGAGGTTTGTGTAAGGATATAACTAAAAACTAAAAATGACAAAGTTGAGGTGGGTATTTTATTTTGATGGGGAGGGACAGACAGTGACTTGAAAAGTCTATTCCTTTCAATTTTTAACATTGTACACATCCATCTCTGTCTCTTTCTTTGTCTAAAAGGTTAGGGGATGGGGTGGTAGGGTACACAATGGAAGCTTAGACAATGGAAGCTTTTTTTTATCTTTCTTTAAAAATTTCTTCCCTCATTTCAAGTCCTTGATGGGGAAATAATTTAATTTACATATTTTTATACATACTTCAAATTGACATATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGTGGTTTAATTAAAACTACAAAAAGAATAATAAAAGAAGAAAGATTATTATTTAAATTACAAATGGATAATTAAGAAAAATGTGAAAGCTAGGTGCTAACGTGAACAATGATGTTTTTAAAGGGAGAGTGACATCTACTACTTTAGAAATACAATTATTGGAGAACTTATTGAAATTGGCCAGATTCAACTAA

mRNA sequence

ATGATGAAGAAACGTCAAGTAGTAGTGAAAAGATCAGATGGAAGATCATCATCATCATCATCATCATCAAATAATAATAGAAATAGCAGTTCATCTTCAATAGTAAGAAGTGTGGTTAGATATGGAGAGTGCCAGAAGAATCATGCTGCAAATATTGGTGGATATGCTGTTGATGGCTGCAGAGAGTTCCTAGCAACTGGTGAAGAAGGCTCTAATGGAGCTCTCACTTGTGCTGCATGTGGTTGCCACAGGAATTTTCATAGAAGAGAAGTTGAATCTGAAGTGGTTTTTGGTTGTGATGACAATAATAGATTTTATAGCTTAGTTGGGATATATTATCAAATTTTTGGCGGATTAGAAATTGAAGTGGGTGATCAAAGCAACAAACACACAATTCTCTTTGATTTAGCAAGCATATCAGATGTTCAAATCTTCATATTATCACCCATGAGCCGTTTAAAGTGTATACAACTCAGAAATGGAGAGAGAGGTTTGTGTGCTAACGTGAACAATGATGTTTTTAAAGGGAGAGTGACATCTACTACTTTAGAAATACAATTATTGGAGAACTTATTGAAATTGGCCAGATTCAACTAA

Coding sequence (CDS)

ATGATGAAGAAACGTCAAGTAGTAGTGAAAAGATCAGATGGAAGATCATCATCATCATCATCATCATCAAATAATAATAGAAATAGCAGTTCATCTTCAATAGTAAGAAGTGTGGTTAGATATGGAGAGTGCCAGAAGAATCATGCTGCAAATATTGGTGGATATGCTGTTGATGGCTGCAGAGAGTTCCTAGCAACTGGTGAAGAAGGCTCTAATGGAGCTCTCACTTGTGCTGCATGTGGTTGCCACAGGAATTTTCATAGAAGAGAAGTTGAATCTGAAGTGGTTTTTGGTTGTGATGACAATAATAGATTTTATAGCTTAGTTGGGATATATTATCAAATTTTTGGCGGATTAGAAATTGAAGTGGGTGATCAAAGCAACAAACACACAATTCTCTTTGATTTAGCAAGCATATCAGATGTTCAAATCTTCATATTATCACCCATGAGCCGTTTAAAGTGTATACAACTCAGAAATGGAGAGAGAGGTTTGTGTGCTAACGTGAACAATGATGTTTTTAAAGGGAGAGTGACATCTACTACTTTAGAAATACAATTATTGGAGAACTTATTGAAATTGGCCAGATTCAACTAA

Protein sequence

MMKKRQVVVKRSDGRSSSSSSSSNNNRNSSSSSIVRSVVRYGECQKNHAANIGGYAVDGCREFLATGEEGSNGALTCAACGCHRNFHRREVESEVVFGCDDNNRFYSLVGIYYQIFGGLEIEVGDQSNKHTILFDLASISDVQIFILSPMSRLKCIQLRNGERGLCANVNNDVFKGRVTSTTLEIQLLENLLKLARFN

Homology

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BLAST of Clc04G12740 vs. NCBI nr
Match: XP_008442199.1 (PREDICTED: mini zinc finger protein 1 [Cucumis melo] >TYJ98891.1 mini zinc finger protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 167.5 bits (423), Expect = 1.1e-37
Identity = 90/98 (91.84%), Postives = 92/98 (93.88%), Query Frame = 0


Query: 1  MMKKRQVVVKRSD--GRSSSSSSSSNNNRNSSSSSIVRSVVRYGECQKNHAANIGGYAVD 60
          MMKKRQVVVKRS   G SSSSSS++NNNRN SSSS VRSVVRYGECQKNHAANIGGYAVD
Sbjct: 2  MMKKRQVVVKRSSEGGGSSSSSSANNNNRNISSSSRVRSVVRYGECQKNHAANIGGYAVD 61

Query: 61 GCREFLATGEEGSNGALTCAACGCHRNFHRREVESEVV 97
          GCREFLATGEEGSNGALTCAACGCHRNFHRREVESEVV
Sbjct: 62 GCREFLATGEEGSNGALTCAACGCHRNFHRREVESEVV 99

[Close]

BLAST of Clc04G12740 vs. NCBI nr
Match: KAA0036083.1 (mini zinc finger protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 167.5 bits (423), Expect = 1.1e-37
Identity = 90/98 (91.84%), Postives = 92/98 (93.88%), Query Frame = 0


Query: 1  MMKKRQVVVKRSD--GRSSSSSSSSNNNRNSSSSSIVRSVVRYGECQKNHAANIGGYAVD 60
          MMKKRQVVVKRS   G SSSSSS++NNNRN SSSS VRSVVRYGECQKNHAANIGGYAVD
Sbjct: 2  MMKKRQVVVKRSSEGGGSSSSSSTNNNNRNISSSSRVRSVVRYGECQKNHAANIGGYAVD 61

Query: 61 GCREFLATGEEGSNGALTCAACGCHRNFHRREVESEVV 97
          GCREFLATGEEGSNGALTCAACGCHRNFHRREVESEVV
Sbjct: 62 GCREFLATGEEGSNGALTCAACGCHRNFHRREVESEVV 99

[Close]

BLAST of Clc04G12740 vs. NCBI nr
Match: XP_004137410.1 (mini zinc finger protein 1 [Cucumis sativus] >KGN64001.1 hypothetical protein Csa_013249 [Cucumis sativus])

HSP 1 Score: 165.6 bits (418), Expect = 4.3e-37
Identity = 89/98 (90.82%), Postives = 92/98 (93.88%), Query Frame = 0


Query: 1  MMKKRQVVVKRSD--GRSSSSSSSSNNNRNSSSSSIVRSVVRYGECQKNHAANIGGYAVD 60
          MMKKRQVVVKRS   G SSSSSS++NNNRN SSSS VRSVVRYGECQKNHAANIGGYAVD
Sbjct: 2  MMKKRQVVVKRSSEGGGSSSSSSANNNNRNISSSSRVRSVVRYGECQKNHAANIGGYAVD 61

Query: 61 GCREFLATGEEGSNGALTCAACGCHRNFHRREVESEVV 97
          GCREFLATGEEGS+GALTCAACGCHRNFHRREVESEVV
Sbjct: 62 GCREFLATGEEGSHGALTCAACGCHRNFHRREVESEVV 99

[Close]

BLAST of Clc04G12740 vs. NCBI nr
Match: XP_022137501.1 (mini zinc finger protein 2 [Momordica charantia])

HSP 1 Score: 162.9 bits (411), Expect = 2.8e-36
Identity = 84/97 (86.60%), Postives = 88/97 (90.72%), Query Frame = 0


Query: 1  MMKKRQVVVKRSDGRSSSSSSSSNNNRNSSSSSIVRSVVRYGECQKNHAANIGGYAVDGC 60
          MMKKRQVVVKRS+G       SSN N +S+SSS+VRSVVRYGECQKNHAANIGGYAVDGC
Sbjct: 1  MMKKRQVVVKRSEG-------SSNRNSSSTSSSVVRSVVRYGECQKNHAANIGGYAVDGC 60

Query: 61 REFLATGEEGSNGALTCAACGCHRNFHRREVESEVVF 98
          REFLATGEEGSNGALTCAACGCHRNFHRREVESEVVF
Sbjct: 61 REFLATGEEGSNGALTCAACGCHRNFHRREVESEVVF 90

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BLAST of Clc04G12740 vs. NCBI nr
Match: XP_038894079.1 (mini zinc finger protein 1-like isoform X2 [Benincasa hispida])

HSP 1 Score: 157.1 bits (396), Expect = 1.5e-34
Identity = 87/100 (87.00%), Postives = 91/100 (91.00%), Query Frame = 0


Query: 1   MMKKRQVVVKR-SDGRSSSSSSSSNN---NRNSSSSSIVRSVVRYGECQKNHAANIGGYA 60
           MMKKRQVVVKR SDG SSSSSS++NN   NRNSSSSS VR+VVRYGECQKNHAANIGGYA
Sbjct: 1   MMKKRQVVVKRSSDGGSSSSSSNNNNSNRNRNSSSSSRVRNVVRYGECQKNHAANIGGYA 60

Query: 61  VDGCREFLATGEEGSNGALTCAACGCHRNFHRREVESEVV 97
           VDGC EFLAT EEGS+GAL CAACGCHRNFHRREVESEVV
Sbjct: 61  VDGCTEFLATAEEGSHGALICAACGCHRNFHRREVESEVV 100

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BLAST of Clc04G12740 vs. ExPASy Swiss-Prot
Match: Q9CA51 (Mini zinc finger protein 1 OS=Arabidopsis thaliana OX=3702 GN=MIF1 PE=1 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.6e-26
Identity = 65/96 (67.71%), Postives = 78/96 (81.25%), Query Frame = 0


Query: 1  MMKKRQVVVKRSDGRSSSSSSSSNNNRNSSSSSIVRSVVRYGECQKNHAANIGGYAVDGC 60
          MMKKRQ+V+K+    S++SSS +  + +SSSS I  S VRY ECQKNHAANIGGYAVDGC
Sbjct: 1  MMKKRQMVIKQRSRNSNTSSSWTTTSSSSSSSEI--SNVRYVECQKNHAANIGGYAVDGC 60

Query: 61 REFLATGEEGSNGALTCAACGCHRNFHRREVESEVV 97
          REF+A G EG+  AL CAACGCHRNFHR+EV++EVV
Sbjct: 61 REFMAAGVEGTVDALRCAACGCHRNFHRKEVDTEVV 94

[Close]

BLAST of Clc04G12740 vs. ExPASy Swiss-Prot
Match: Q9LJW5 (Mini zinc finger protein 2 OS=Arabidopsis thaliana OX=3702 GN=MIF2 PE=1 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.3e-25
Identity = 62/100 (62.00%), Postives = 77/100 (77.00%), Query Frame = 0


Query: 2   MKKRQVVVKRSDGRSSSSSSSSNNNRNSSSSSIVRSVVRYGECQKNHAANIGGYAVDGCR 61
           M+KRQVV++R+     S SS       S++SS+    VRYGECQKNHAA +GGYAVDGCR
Sbjct: 1   MRKRQVVLRRASPEEPSRSS-------STASSLTVRTVRYGECQKNHAAAVGGYAVDGCR 60

Query: 62  EFLAT-GEEGSNGALTCAACGCHRNFHRREVESEVVFGCD 101
           EF+A+ GEEG+  ALTCAACGCHR+FHRRE+E+EVV  C+
Sbjct: 61  EFMASRGEEGTVAALTCAACGCHRSFHRREIETEVVCDCN 93

[Close]

BLAST of Clc04G12740 vs. ExPASy Swiss-Prot
Match: Q2Q493 (Mini zinc finger protein 3 OS=Arabidopsis thaliana OX=3702 GN=MIF3 PE=1 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 6.2e-23
Identity = 60/95 (63.16%), Postives = 69/95 (72.63%), Query Frame = 0


Query: 2  MKKRQVVVKRSDGRSSSSSSSSNNNRNSSSSSIVRSVVRYGECQKNHAANIGGYAVDGCR 61
          MKKRQVV+K+     + +SSSSN              VRY ECQKNHAANIGGYAVDGCR
Sbjct: 1  MKKRQVVIKQRKSSYTMTSSSSN--------------VRYVECQKNHAANIGGYAVDGCR 60

Query: 62 EFLATGEEGSNGALTCAACGCHRNFHRREVESEVV 97
          EF+A+   G + ALTCAACGCHRNFHRREV++EVV
Sbjct: 61 EFMAS---GGDDALTCAACGCHRNFHRREVDTEVV 78

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BLAST of Clc04G12740 vs. ExPASy Swiss-Prot
Match: Q0J5F8 (Mini zinc finger protein 4 OS=Oryza sativa subsp. japonica OX=39947 GN=MIF4 PE=2 SV=2)

HSP 1 Score: 101.7 bits (252), Expect = 9.9e-21
Identity = 44/62 (70.97%), Postives = 51/62 (82.26%), Query Frame = 0


Query: 39  VRYGECQKNHAANIGGYAVDGCREFLATGEEGSNGALTCAACGCHRNFHRREVESEVVFG 98
           VRYGEC++NHAA +GG+AVDGCREFLA GEEG+ GAL CAACGCHR+FHRR V  +    
Sbjct: 33  VRYGECRRNHAARMGGHAVDGCREFLAEGEEGTGGALRCAACGCHRSFHRRVVVVQQCCA 92

Query: 99  CD 101
           CD
Sbjct: 93  CD 94

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BLAST of Clc04G12740 vs. ExPASy Swiss-Prot
Match: B8BIU8 (Mini zinc finger protein 1 OS=Oryza sativa subsp. indica OX=39946 GN=MIF1 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 4.6e-18
Identity = 45/82 (54.88%), Postives = 62/82 (75.61%), Query Frame = 0


Query: 12 SDGRSSSSSSSSNNNRNSSSSSIVRSVVRYGECQKNHAANIGGYAVDGCREFLATGEEGS 71
          ++G +++++++     N         VVRY ECQ+NHAA+IGG+AVDGCREF+A+G EG+
Sbjct: 14 ANGSTAAAAAAGRKENN--------KVVRYRECQRNHAASIGGHAVDGCREFMASGAEGT 73

Query: 72 NGALTCAACGCHRNFHRREVES 94
            AL CAACGCHR+FHRREVE+
Sbjct: 74 AAALLCAACGCHRSFHRREVEA 87

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BLAST of Clc04G12740 vs. ExPASy TrEMBL
Match: A0A5D3BJJ4 (Mini zinc finger protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G00880 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 5.5e-38
Identity = 90/98 (91.84%), Postives = 92/98 (93.88%), Query Frame = 0


Query: 1  MMKKRQVVVKRSD--GRSSSSSSSSNNNRNSSSSSIVRSVVRYGECQKNHAANIGGYAVD 60
          MMKKRQVVVKRS   G SSSSSS++NNNRN SSSS VRSVVRYGECQKNHAANIGGYAVD
Sbjct: 2  MMKKRQVVVKRSSEGGGSSSSSSANNNNRNISSSSRVRSVVRYGECQKNHAANIGGYAVD 61

Query: 61 GCREFLATGEEGSNGALTCAACGCHRNFHRREVESEVV 97
          GCREFLATGEEGSNGALTCAACGCHRNFHRREVESEVV
Sbjct: 62 GCREFLATGEEGSNGALTCAACGCHRNFHRREVESEVV 99

[Close]

BLAST of Clc04G12740 vs. ExPASy TrEMBL
Match: A0A5A7SZK7 (Mini zinc finger protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold112G00780 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 5.5e-38
Identity = 90/98 (91.84%), Postives = 92/98 (93.88%), Query Frame = 0


Query: 1  MMKKRQVVVKRSD--GRSSSSSSSSNNNRNSSSSSIVRSVVRYGECQKNHAANIGGYAVD 60
          MMKKRQVVVKRS   G SSSSSS++NNNRN SSSS VRSVVRYGECQKNHAANIGGYAVD
Sbjct: 2  MMKKRQVVVKRSSEGGGSSSSSSTNNNNRNISSSSRVRSVVRYGECQKNHAANIGGYAVD 61

Query: 61 GCREFLATGEEGSNGALTCAACGCHRNFHRREVESEVV 97
          GCREFLATGEEGSNGALTCAACGCHRNFHRREVESEVV
Sbjct: 62 GCREFLATGEEGSNGALTCAACGCHRNFHRREVESEVV 99

[Close]

BLAST of Clc04G12740 vs. ExPASy TrEMBL
Match: A0A1S3B557 (mini zinc finger protein 1 OS=Cucumis melo OX=3656 GN=LOC103486103 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 5.5e-38
Identity = 90/98 (91.84%), Postives = 92/98 (93.88%), Query Frame = 0


Query: 1  MMKKRQVVVKRSD--GRSSSSSSSSNNNRNSSSSSIVRSVVRYGECQKNHAANIGGYAVD 60
          MMKKRQVVVKRS   G SSSSSS++NNNRN SSSS VRSVVRYGECQKNHAANIGGYAVD
Sbjct: 2  MMKKRQVVVKRSSEGGGSSSSSSANNNNRNISSSSRVRSVVRYGECQKNHAANIGGYAVD 61

Query: 61 GCREFLATGEEGSNGALTCAACGCHRNFHRREVESEVV 97
          GCREFLATGEEGSNGALTCAACGCHRNFHRREVESEVV
Sbjct: 62 GCREFLATGEEGSNGALTCAACGCHRNFHRREVESEVV 99

[Close]

BLAST of Clc04G12740 vs. ExPASy TrEMBL
Match: A0A0A0LVI9 (ZF-HD dimerization-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G033205 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 2.1e-37
Identity = 89/98 (90.82%), Postives = 92/98 (93.88%), Query Frame = 0


Query: 1  MMKKRQVVVKRSD--GRSSSSSSSSNNNRNSSSSSIVRSVVRYGECQKNHAANIGGYAVD 60
          MMKKRQVVVKRS   G SSSSSS++NNNRN SSSS VRSVVRYGECQKNHAANIGGYAVD
Sbjct: 2  MMKKRQVVVKRSSEGGGSSSSSSANNNNRNISSSSRVRSVVRYGECQKNHAANIGGYAVD 61

Query: 61 GCREFLATGEEGSNGALTCAACGCHRNFHRREVESEVV 97
          GCREFLATGEEGS+GALTCAACGCHRNFHRREVESEVV
Sbjct: 62 GCREFLATGEEGSHGALTCAACGCHRNFHRREVESEVV 99

[Close]

BLAST of Clc04G12740 vs. ExPASy TrEMBL
Match: A0A6J1C6T5 (mini zinc finger protein 2 OS=Momordica charantia OX=3673 GN=LOC111008932 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 1.3e-36
Identity = 84/97 (86.60%), Postives = 88/97 (90.72%), Query Frame = 0


Query: 1  MMKKRQVVVKRSDGRSSSSSSSSNNNRNSSSSSIVRSVVRYGECQKNHAANIGGYAVDGC 60
          MMKKRQVVVKRS+G       SSN N +S+SSS+VRSVVRYGECQKNHAANIGGYAVDGC
Sbjct: 1  MMKKRQVVVKRSEG-------SSNRNSSSTSSSVVRSVVRYGECQKNHAANIGGYAVDGC 60

Query: 61 REFLATGEEGSNGALTCAACGCHRNFHRREVESEVVF 98
          REFLATGEEGSNGALTCAACGCHRNFHRREVESEVVF
Sbjct: 61 REFLATGEEGSNGALTCAACGCHRNFHRREVESEVVF 90

[Close]

BLAST of Clc04G12740 vs. TAIR 10
Match: AT1G74660.1 (mini zinc finger 1 )

HSP 1 Score: 120.9 bits (302), Expect = 1.1e-27
Identity = 65/96 (67.71%), Postives = 78/96 (81.25%), Query Frame = 0


Query: 1  MMKKRQVVVKRSDGRSSSSSSSSNNNRNSSSSSIVRSVVRYGECQKNHAANIGGYAVDGC 60
          MMKKRQ+V+K+    S++SSS +  + +SSSS I  S VRY ECQKNHAANIGGYAVDGC
Sbjct: 1  MMKKRQMVIKQRSRNSNTSSSWTTTSSSSSSSEI--SNVRYVECQKNHAANIGGYAVDGC 60

Query: 61 REFLATGEEGSNGALTCAACGCHRNFHRREVESEVV 97
          REF+A G EG+  AL CAACGCHRNFHR+EV++EVV
Sbjct: 61 REFMAAGVEGTVDALRCAACGCHRNFHRKEVDTEVV 94

[Close]

BLAST of Clc04G12740 vs. TAIR 10
Match: AT3G28917.1 (mini zinc finger 2 )

HSP 1 Score: 117.9 bits (294), Expect = 9.5e-27
Identity = 62/100 (62.00%), Postives = 77/100 (77.00%), Query Frame = 0


Query: 2   MKKRQVVVKRSDGRSSSSSSSSNNNRNSSSSSIVRSVVRYGECQKNHAANIGGYAVDGCR 61
           M+KRQVV++R+     S SS       S++SS+    VRYGECQKNHAA +GGYAVDGCR
Sbjct: 1   MRKRQVVLRRASPEEPSRSS-------STASSLTVRTVRYGECQKNHAAAVGGYAVDGCR 60

Query: 62  EFLAT-GEEGSNGALTCAACGCHRNFHRREVESEVVFGCD 101
           EF+A+ GEEG+  ALTCAACGCHR+FHRRE+E+EVV  C+
Sbjct: 61  EFMASRGEEGTVAALTCAACGCHRSFHRREIETEVVCDCN 93

[Close]

BLAST of Clc04G12740 vs. TAIR 10
Match: AT1G18835.1 (mini zinc finger )

HSP 1 Score: 109.0 bits (271), Expect = 4.4e-24
Identity = 60/95 (63.16%), Postives = 69/95 (72.63%), Query Frame = 0


Query: 2  MKKRQVVVKRSDGRSSSSSSSSNNNRNSSSSSIVRSVVRYGECQKNHAANIGGYAVDGCR 61
          MKKRQVV+K+     + +SSSSN              VRY ECQKNHAANIGGYAVDGCR
Sbjct: 1  MKKRQVVIKQRKSSYTMTSSSSN--------------VRYVECQKNHAANIGGYAVDGCR 60

Query: 62 EFLATGEEGSNGALTCAACGCHRNFHRREVESEVV 97
          EF+A+   G + ALTCAACGCHRNFHRREV++EVV
Sbjct: 61 EFMAS---GGDDALTCAACGCHRNFHRREVDTEVV 78

[Close]

BLAST of Clc04G12740 vs. TAIR 10
Match: AT2G02540.1 (homeobox protein 21 )

HSP 1 Score: 90.1 bits (222), Expect = 2.1e-18
Identity = 38/57 (66.67%), Postives = 45/57 (78.95%), Query Frame = 0


Query: 38  VVRYGECQKNHAANIGGYAVDGCREFLATGEEGSNGALTCAACGCHRNFHRREVESE 95
           V++Y EC KNHAA +GG A+DGC EF+ +GEEGS  ALTC+ C CHRNFHRRE E E
Sbjct: 84  VIKYKECLKNHAATMGGNAIDGCGEFMPSGEEGSIEALTCSVCNCHRNFHRRETEGE 140

[Close]

BLAST of Clc04G12740 vs. TAIR 10
Match: AT1G14440.1 (homeobox protein 31 )

HSP 1 Score: 89.7 bits (221), Expect = 2.8e-18
Identity = 38/62 (61.29%), Postives = 49/62 (79.03%), Query Frame = 0


Query: 34  IVRSVVRYGECQKNHAANIGGYAVDGCREFLATGEEGSNGALTCAACGCHRNFHRREVES 93
           I + +++Y EC KNHAA +GG A DGC EF+ +GE+GS  ALTC+AC CHRNFHR+EVE 
Sbjct: 83  IKKPMIKYKECLKNHAAAMGGNATDGCGEFMPSGEDGSIEALTCSACNCHRNFHRKEVEG 142

Query: 94  EV 96
           E+
Sbjct: 143 EL 144

The following BLAST results are available for this feature:

BLAST of Clc04G12740 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008442199.1	1.1e-37	91.84	PREDICTED: mini zinc finger protein 1 [Cucumis melo] >TYJ98891.1 mini zinc finge...	[more]
KAA0036083.1	1.1e-37	91.84	mini zinc finger protein 1 [Cucumis melo var. makuwa]	[more]
XP_004137410.1	4.3e-37	90.82	mini zinc finger protein 1 [Cucumis sativus] >KGN64001.1 hypothetical protein Cs...	[more]
XP_022137501.1	2.8e-36	86.60	mini zinc finger protein 2 [Momordica charantia]	[more]
XP_038894079.1	1.5e-34	87.00	mini zinc finger protein 1-like isoform X2 [Benincasa hispida]	[more]

BLAST of Clc04G12740 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CA51	1.6e-26	67.71	Mini zinc finger protein 1 OS=Arabidopsis thaliana OX=3702 GN=MIF1 PE=1 SV=1	[more]
Q9LJW5	1.3e-25	62.00	Mini zinc finger protein 2 OS=Arabidopsis thaliana OX=3702 GN=MIF2 PE=1 SV=1	[more]
Q2Q493	6.2e-23	63.16	Mini zinc finger protein 3 OS=Arabidopsis thaliana OX=3702 GN=MIF3 PE=1 SV=1	[more]
Q0J5F8	9.9e-21	70.97	Mini zinc finger protein 4 OS=Oryza sativa subsp. japonica OX=39947 GN=MIF4 PE=2...	[more]
B8BIU8	4.6e-18	54.88	Mini zinc finger protein 1 OS=Oryza sativa subsp. indica OX=39946 GN=MIF1 PE=3 S...	[more]

BLAST of Clc04G12740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BJJ4	5.5e-38	91.84	Mini zinc finger protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A5A7SZK7	5.5e-38	91.84	Mini zinc finger protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff...	[more]
A0A1S3B557	5.5e-38	91.84	mini zinc finger protein 1 OS=Cucumis melo OX=3656 GN=LOC103486103 PE=4 SV=1	[more]
A0A0A0LVI9	2.1e-37	90.82	ZF-HD dimerization-type domain-containing protein OS=Cucumis sativus OX=3659 GN=...	[more]
A0A6J1C6T5	1.3e-36	86.60	mini zinc finger protein 2 OS=Momordica charantia OX=3673 GN=LOC111008932 PE=4 S...	[more]

BLAST of Clc04G12740 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G74660.1	1.1e-27	67.71	mini zinc finger 1	[more]
AT3G28917.1	9.5e-27	62.00	mini zinc finger 2	[more]
AT1G18835.1	4.4e-24	63.16	mini zinc finger	[more]
AT2G02540.1	2.1e-18	66.67	homeobox protein 21	[more]
AT1G14440.1	2.8e-18	61.29	homeobox protein 31	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain	TIGRFAM	TIGR01566	TIGR01566	coord: 40..91 e-value: 1.6E-25 score: 87.2
IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain	PFAM	PF04770	ZF-HD_dimer	coord: 39..91 e-value: 4.4E-29 score: 100.6
IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain	PROSITE	PS51523	ZF_HD_DIMER	coord: 41..90 score: 25.573153
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..33
None	No IPR available	PANTHER	PTHR31948	ZINC-FINGER HOMEODOMAIN PROTEIN 2	coord: 3..97
None	No IPR available	PANTHER	PTHR31948:SF65	MINI ZINC FINGER PROTEIN 1	coord: 3..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc04G12740.2	Clc04G12740.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0000976	transcription cis-regulatory region binding